mRNA_P-littoralis_Contig17.46.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: D8LLJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLJ6_ECTSI) HSP 1 Score: 279 bits (714), Expect = 4.970e-95 Identity = 131/142 (92.25%), Postives = 139/142 (97.89%), Query Frame = 1
Query: 1 QIVTLRPRTNPTDLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPWDMEWRKRNGIEQPVHNRRRTPPKKKW 426
QIVTLRPRTNPTDLTNIFRRAAAV+LEEGGVVRSV NHG+RVLPYRFHS+HDIKE D+RWF+SGRWASAYYDASPAVAKKME+QLWAEDKVIRVSTRRP+TKMDRI+STHERSNPWDMEWR RNGIEQPVHNRRRTPPKKKW
Sbjct: 6 QIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPATKMDRIASTHERSNPWDMEWRNRNGIEQPVHNRRRTPPKKKW 147
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: A0A835Z0N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N7_9STRA) HSP 1 Score: 101 bits (251), Expect = 3.210e-24 Identity = 49/118 (41.53%), Postives = 75/118 (63.56%), Query Frame = 1
Query: 4 IVTLRPRTNPTDLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPWDME 357
+ T + RT P LT ++RR VLE+GG+VR V NHG++ L YRF +R + ++NR+ T GRW S Y+DA P K++ L +D +R +T +P KM+ IS+ H+ +NPW+ +
Sbjct: 7 VFTCKWRTPPEQLTRLYRRLCNTVLEDGGMVRCVENHGVKDLAYRFRARTAMSGSENRYHTRGRWVSMYFDARPETLDKIDADLKMQDFYLRSNTIKPVVKMNWISTRHK-TNPWERD 123
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: A0A6S8YXD6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8YXD6_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.450e-19 Identity = 41/115 (35.65%), Postives = 75/115 (65.22%), Query Frame = 1
Query: 4 IVTLRPRTNPTDLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPW 348
++T + + LTN + +++V+E GG+VR+V NHGIR LP+RF +R+ KE NR++ GR+ S +YDASP ++E ++ +D+++R + + K+ I++ +E+ NP+
Sbjct: 7 VLTAKNTASFASLTNTVKSISSIVVESGGIVRTVQNHGIRNLPHRFKARYPDKEG-NRYYKEGRFISVWYDASPRTLNQVENEIRLDDQILRYTHLKARNKLWYINNPNEKKNPY 120
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: A0A7S2IGM9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IGM9_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.750e-18 Identity = 41/105 (39.05%), Postives = 69/105 (65.71%), Query Frame = 1
Query: 34 TDLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPW 348
T LT + + ++ V+E GG+VR+V NHGIR LP+RF +++ KE NR++ GR+ S +YDASP V K+E ++ +D+++R + + K+ I+ E+ NP+
Sbjct: 17 TSLTKLMKTISSTVVENGGIVRTVQNHGIRNLPHRFKAKYPDKEG-NRYYKKGRFISVWYDASPRVLAKVENEIRLDDQILRHTHLKARNKLWYINIASEKKNPY 120
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: A0A7S1YM88_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YM88_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 4.180e-17 Identity = 40/103 (38.83%), Postives = 68/103 (66.02%), Query Frame = 1
Query: 40 LTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPW 348
LT++ + + V+E GG+VRSV NHGIR L +RF +RH ++ R F GR+ S YYD+SPA+ +++ + L ++ V+R + R K+D I++ +++ NP+
Sbjct: 19 LTSLMKEISLKVVENGGIVRSVQNHGIRDLAHRFRARHPDRDG-TRLFQKGRFISVYYDSSPAIQEEVGEILVMDENVLRATHLRARNKLDTINNPYQKKNPY 120
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: A0A6T7JZ88_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A6T7JZ88_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 4.690e-17 Identity = 40/104 (38.46%), Postives = 69/104 (66.35%), Query Frame = 1
Query: 37 DLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPW 348
+LTN+ + + V+E GG+VRSV NHGIR LP+RF +++ KE NR++ GR+ S +YDASP ++++ L +++V+R + +P K+ + +E+ NP+
Sbjct: 18 NLTNLMKTVSLKVVERGGIVRSVQNHGIRDLPHRFKAKYPDKEG-NRYYKKGRFISVFYDASPHAREEVQAILDLDEEVLRNTHLKPRNKVTYANIVNEKKNPY 120
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: A0A1E7FMF6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMF6_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.450e-16 Identity = 39/115 (33.91%), Postives = 72/115 (62.61%), Query Frame = 1
Query: 4 IVTLRPRTNPTDLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPW 348
+++ + T+ LT + ++ + V+E GG+VRS+ NHG+R P+RF +++ R++ GR+ S YYD++P K++E L D+V+RV+ + +K+D I+ HE+ NP+
Sbjct: 7 VLSTKHTTHFKALTALMKQVSLKVVENGGIVRSIQNHGLRTFPHRFKAKYPDYLTQQRYYEQGRFISIYYDSNPTTLKQVETVLTMNDQVLRVTHLKSRSKLDWINYKHEK-NPY 120
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: K0TLA5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLA5_THAOC) HSP 1 Score: 81.3 bits (199), Expect = 1.480e-16 Identity = 39/115 (33.91%), Postives = 73/115 (63.48%), Query Frame = 1
Query: 4 IVTLRPRTNPTDLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPW 348
++T + T+ LT++ + + ++E GG+VRS+ NHGIR LP+RF S++ +E NR++ GR+ S +YD++P AK++E L ++++R + R S + + ++ E NP+
Sbjct: 45 LMTAKNTTHYNLLTSLMKEVSHKIVENGGIVRSIQNHGIRQLPHRFKSKYADREG-NRYYEKGRFISVFYDSNPVTAKQVETILNLNEEILRNTHLRASNRFNEVNDLLESRNPY 158
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: A0A448Z259_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z259_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.720e-16 Identity = 37/99 (37.37%), Postives = 63/99 (63.64%), Query Frame = 1
Query: 52 FRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPW 348
+ + V+E GG++RS+ NHG+R P+RF +++ R++ GR+ S YYDA+PA KK+E L D+V+RV+ + +K+D I+ H++ NP+
Sbjct: 1 MKEVSLKVVENGGIIRSIQNHGLRTFPHRFKAKYPDYLTQQRYYEQGRFISVYYDANPATLKKVENILNMNDQVLRVTHLKSRSKLDWINYRHDK-NPY 98
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: A0A7S2MAY0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2MAY0_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 7.270e-15 Identity = 35/118 (29.66%), Postives = 72/118 (61.02%), Query Frame = 1
Query: 4 IVTLRPRTNPTDLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPWDME 357
++T + + +LT + + + ++ GG+VRS+ NHG+R LP+RF +++ +E NR++ GR+ S +YDASP + +++E L +++++R + + K +++ E NP+ E
Sbjct: 7 LMTAKNTAHYNNLTALMKDISLKIVNNGGIVRSIQNHGVRQLPHRFRAKYADREG-NRYYEKGRFVSVFYDASPGIMRQVEGILNLDEQILRNTHLKGRNKFMDVNNVREAKNPYIQE 123 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig17.46.1 >prot_P-littoralis_Contig17.46.1 ID=prot_P-littoralis_Contig17.46.1|Name=mRNA_P-littoralis_Contig17.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp QIVTLRPRTNPTDLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRback to top mRNA from alignment at P-littoralis_Contig17:214132..215442- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig17.46.1 ID=mRNA_P-littoralis_Contig17.46.1|Name=mRNA_P-littoralis_Contig17.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1311bp|location=Sequence derived from alignment at P-littoralis_Contig17:214132..215442- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig17:214132..215442- >mRNA_P-littoralis_Contig17.46.1 ID=mRNA_P-littoralis_Contig17.46.1|Name=mRNA_P-littoralis_Contig17.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig17:214132..215442- (Pylaiella littoralis U1_48)back to top |