mRNA_P-littoralis_Contig17.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.42.1
Unique NamemRNA_P-littoralis_Contig17.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig17.42.1 vs. uniprot
Match: A0A1R3HQ96_9ROSI (Transposase, Tc1-like protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3HQ96_9ROSI)

HSP 1 Score: 194 bits (493), Expect = 1.090e-56
Identity = 120/283 (42.40%), Postives = 171/283 (60.42%), Query Frame = 1
Query:   22 VGTVKRKNLTTSGKRAAIAELLKGSKNGKLGKGDLKRVGEQFQQHPQTISRLWKDYNKQKDAGEVDPNLDNKRKQKSGRKGIDLVSIQAALAGIPIKNRTTIRGVAAALGIPRSTLFDNLKKLGLRAASRYLKPLLTDGNKTARLERVLRWVSSSAGGGHN--FHHFEDFVHIDEKWFYICQNGQKYYLYTDEEVPTRKVQHKSHITKVMFLAAVARPRFDSSRNRNFTGKLGIFPFTEQRGARRNSRNRAAGTLETKRVEVTKEVFKKKVVEAIIPAIKACW 864
            + T   +NLT   ++     LLK SK+G L KG L  +   F   P+TI R+WK      + G +  N+ +K     GRK I L+  +  ++ IP++ RT IR +A AL + +ST+   +K+  +RA S  +KP LTD NK  RLE  L  +  +  G +   F    + VHIDEKWF++ +  ++YYL  +E+ P R  + K  ITKVMFLAAVARPRFD S N  F+GK+GIFPF  +  A+R S+NR AGT+ETK + VTK+V +  ++E I+PAIK+ W
Sbjct:   10 ISTKHSRNLTNQQRQTIYEMLLKQSKDGVLSKGSLTSLATMFSVSPKTIGRIWKQAKLCMENGLI-VNVSSKLTGNVGRKKI-LIDPRK-VSEIPLRRRTNIRSIAKALNMSKSTVHRRVKEGFIRAHSNAVKPDLTDENKKTRLEFCLSKLDLTNAGINTIPFDGMFNQVHIDEKWFFMTRESERYYLLPEEDEPVRTCKSKRFITKVMFLAAVARPRFDESGNVKFSGKIGIFPFVHKEPAKRKSKNRIAGTMETKPMLVTKDVTRAYMIEKILPAIKSKW 289          
BLAST of mRNA_P-littoralis_Contig17.42.1 vs. uniprot
Match: A0A6P6TEQ3_COFAR (uncharacterized protein LOC113700698 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6TEQ3_COFAR)

HSP 1 Score: 197 bits (502), Expect = 5.230e-56
Identity = 120/290 (41.38%), Postives = 177/290 (61.03%), Query Frame = 1
Query:    1 MSASGNVVGTVKRKNLTTSGKRAAIAELLKGSKNGKLGKGDLKRVGEQFQQHPQTISRLWKDYNKQKDAGEVDPNLDNKRKQKSGRKGIDLVSIQAALAGIPIKNRTTIRGVAAALGIPRSTLFDNLKKLGLRAASRYLKPLLTDGNKTARLERVLRWVSSSA-GGGHNFHHFEDFVHIDEKWFYICQNGQKYYLYTDEEVPTRKVQHKSHITKVMFLAAVARPRFDSSRNRNFTGKLGIFPFTEQRGARRNSRNRAAGTLETKRV-EVTKEVFKKKVVEAIIPAIKACW 864
            ++AS N    +K+KN TT+ KRA    LLK  +NGKL KG + RV E F    +++SR+W +      A    PNL  K  ++ GRK I  V+++  +  IP + RT IR +A AL + +S+L   +K+  LR  S  +KP L+  +K ARL+  L  +S        +F +  D +HIDEKWFY+ +  Q+YYL+  E  P R  + K  + K+MFLAAVARPR+D + N+ F GK+GI+PF  +  A+RNS+NR AGTLETK +  +TK+V +  ++E ++PAI+  W
Sbjct:   81 IAASENTRQPMKKKNFTTALKRAIYEMLLKECENGKLSKGVISRVAECFDISTRSVSRIWHEGKCTATAYGHLPNLSPKLVKRVGRKKIQ-VNLED-IKDIPFRRRTNIRSLAKALDVSKSSLHRRIKEESLRPHSNPVKPYLSTDSKKARLQFCLSMISEGTLASKFSFDNMHDRIHIDEKWFYMSKTSQRYYLHPLEHEPYRTCKSKRFVPKLMFLAAVARPRYDITLNKQFNGKIGIWPFVFKEPAKRNSKNRTAGTLETKPILSITKDVIRSCLIEKLLPAIREKW 368          
BLAST of mRNA_P-littoralis_Contig17.42.1 vs. uniprot
Match: UPI000CD9BE6A (uncharacterized protein LOC111905831 n=2 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9BE6A)

HSP 1 Score: 193 bits (490), Expect = 2.640e-55
Identity = 117/285 (41.05%), Postives = 175/285 (61.40%), Query Frame = 1
Query:   16 NVVGTVKRKNLTTSGKRAAIAELLKGSKNGKLGKGDLKRVGEQFQQHPQTISRLWKDYNKQKDAGEVDPNLDNKRKQKSGRKGIDLVSIQAALAGIPIKNRTTIRGVAAALGIPRSTLFDNLKKLGLRAASRYLKPLLTDGNKTARLERVLRWVSSSAGGGHN-FHHFEDFVHIDEKWFYICQNGQKYYLYTDEEVPTRKVQHKSHITKVMFLAAVARPRFDSSRNRNFTGKLGIFPFTEQRGARRNSRNRAAGTLETKRV-EVTKEVFKKKVVEAIIPAIKACW 864
            N + ++ +K+ T +  +     LL+ + NG+L +G +  V   F    +T+SR+W     Q + G +  +  +K+ +  GRK + L   Q  ++ IP++ RTTI+ +A +LGI +STL   +K+  LR  +  +KP LTD NKT RLE  L  ++ S    +  FH   + +HIDEKWFYI ++ ++YYL   E+ P R  + K  ITKVMFLAAVAR RFD+  N  F GK+GIFP T +  A+R+S+NR AGTLETK +  VTKE+ +  ++E ++PAIKA W
Sbjct:    3 NTLTSLTKKHTTYAQCQDIFQALLQHNSNGELRRGSINDVAALFGVSKRTVSRIWNRAKLQVENGSI-IDFSSKKLKVVGRKRVQLDLNQ--VSQIPLRRRTTIQSIAKSLGIVKSTLHRRIKEGDLRPRTNAIKPDLTDANKTKRLEFCLSMITRSLPESNTTFHDMFNVIHIDEKWFYISRSSKRYYLVPGEDEPLRTCKSKKFITKVMFLAAVARLRFDALGNEIFFGKIGIFPLTTKEPAKRSSKNRVAGTLETKPILSVTKEITRSWLIEKVLPAIKAKW 284          
BLAST of mRNA_P-littoralis_Contig17.42.1 vs. uniprot
Match: A0A6A4ZBD2_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZBD2_9STRA)

HSP 1 Score: 193 bits (490), Expect = 7.860e-55
Identity = 111/272 (40.81%), Postives = 167/272 (61.40%), Query Frame = 1
Query:   43 NLTTSGKRAAIAELLKGSKNGKLGKGDLKRVGEQFQQHPQTISRLWKDYNKQKDAGEVDPNLDNKRKQKSGRKGIDLVS-IQAALAGIPIKNRTTIRGVAAALGIPRSTLFDNLKKLG-LRAASRYLKPLLTDGNKTARLERVLRWVSSSAGGGHNFHHFEDFVHIDEKWFYICQNGQKYYLYTDEEVPTRKVQHKSHITKVMFLAAVARPRFDSSRNRNFTGKLGIFPFTEQRGARRNSRNRAAGTLETKRVEVTKEVFKKKVVEAIIPAI 852
            +LT + +RAA   LL+ S NG+L  G LK V   F+ H +TISR+WK        G    ++D+K K  SGRK   L    + A+  +P   R T+R +AA  G+P++++  ++++   L++ + Y+KP+LT+ N  ARL+    +V     G H F    ++VH+DEKWFY+ +  +K+Y+Y DEEV  R V+ K  ITKVMFLAAVARP++D +RN  F GK+G++PF     A+RNS+NRA G        V  +V+KK +++ +IPAI
Sbjct:   11 HLTPTERRAAYELLLQSSTNGRLKYGALKEVATYFKCHWKTISRVWKRGRLSLSDGSPHADVDSKLKGNSGRKKSRLADDFEGAIKAVPQHQRQTLRSLAAHCGLPKTSIVRHMQETKRLKSRASYVKPMLTEDNTKARLDFAKSFVRLLPSGNHAFVDMNEYVHVDEKWFYLTRVKRKFYVYDDEEVALRAVKSKQFITKVMFLAAVARPQYDHTRNAYFDGKVGVWPFVVVEPAKRNSKNRAKGAPVVVPQVVDGKVYKKAIIDKVIPAI 282          
BLAST of mRNA_P-littoralis_Contig17.42.1 vs. uniprot
Match: UPI0012635B1A (uncharacterized protein LOC116110731 n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI0012635B1A)

HSP 1 Score: 192 bits (489), Expect = 1.350e-54
Identity = 111/284 (39.08%), Postives = 169/284 (59.51%), Query Frame = 1
Query:   31 VKRKNLTTSGKRAAIAELLKGSKNGKLGKGDLKRVGEQFQQHPQTISRLWKDYNKQKDAGEVDPNLDNKRKQKSGRKGIDLVSIQAALAGIPIKNRTTIRGVAAALGIPRSTLFDNLKKLGLRAASRYLKPLLTDGNKTARLERVLRWVSSSAGGGHN-----FHHFEDFVHIDEKWFYICQNGQKYYLYTDEEVPTRKVQHKSHITKVMFLAAVARPRFDSSRNRNFTGKLGIFPFTEQRGARRNSRNRAAGTLETKRVE-VTKEVFKKKVVEAIIPAIKACW 864
            V RKNLT   ++A    LLK S NG+L K     V + F    +T+ R+W+   K+ +  +   N+ +++    GRK +++   Q     IP++ RT++R ++A   +  +TLF  LK+  +R  S  +KPLL   N  AR+   L  +      G+N     F   E+ +H+DEKWFY+ +  +KYYL  DE+ P R  + K+ ITKVMFLAAV RPRFD S N  F+GK+GIFPF  +  ARR+S+NR+AGT+ETK +  + KE+++  ++E ++PAI+  W
Sbjct:   39 VSRKNLTNEQRQAIFESLLKRSVNGQLKKNTTSEVAQLFSVSMRTVQRIWQ-RGKENEVLDSSTNVSSRKALNCGRKRLEIDVSQ--FRNIPLRRRTSLRSLSAVTNLSVTTLFRRLKEGSIRRHSNAIKPLLNVENMKARIRFCLSMIEH----GNNPSCLRFVTMENIIHVDEKWFYMTKQSEKYYLLPDEDEPLRTCKSKTFITKVMFLAAVTRPRFDESGNELFSGKIGIFPFINKEPARRSSKNRSAGTMETKTINSINKEIYRSYIIEKLLPAIRDKW 315          
BLAST of mRNA_P-littoralis_Contig17.42.1 vs. uniprot
Match: A0A834LPB9_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LPB9_RHOSS)

HSP 1 Score: 191 bits (485), Expect = 3.210e-54
Identity = 117/282 (41.49%), Postives = 172/282 (60.99%), Query Frame = 1
Query:   34 KRKNLTTSGKRAAIAELLKGSKNGKLGKGDLKRVGEQFQQHPQTISRLWKDYNKQKDAG---EVDPNLDNKRKQKSGRKGIDLVSIQAALAGIPIKNRTTIRGVAAALGIPRSTLFDNLKKLGLRAASRYLKPLLTDGNKTARLERVLRWVS-SSAGGGHNFHHFEDFVHIDEKWFYICQNGQKYYLYTDEEVPTRKVQHKSHITKVMFLAAVARPRFDSSRNRNFTGKLGIFPFTEQRGARRNSRNRAAGTLETKRV-EVTKEVFKKKVVEAIIPAIKACW 864
            +++NLT   +R  +  L   S +GKL +G LK V   +   P+T+ ++ +  N     G   +V PNL    + + GRK + L   +  +A +P   RT IR +A AL +PR+T+   +K   +R  +  LKP L++  K ARL+  L  +  SS      F +  ++VHIDEKWF++ +  ++YYL   E  P R  + K  ITKVMFLAAVARPRFD++RN+ F+GK+GIFPFT +  A+R S+NR AGTLETK V  VTKE+ +K ++E ++PAI+A W
Sbjct:   14 EKRNLTDQQRREILEILFSKSASGKLKRGCLKEVAAMYSVDPRTVRQIVQKANSCIAKGLTVDVSPNL----RGRVGRKRVQLDLNK--IAALPYSQRTNIRSIAEALEVPRTTIHRRVKDGVMRPHTNPLKPCLSEEGKRARLQFCLSMLEPSSLQSQPTFKNMYNYVHIDEKWFFMTKESERYYLLPHENEPLRTCKSKHFITKVMFLAAVARPRFDTTRNQEFSGKIGIFPFTYKEPAKRTSKNRVAGTLETKVVVSVTKEIIRKCLIEKVLPAIRAKW 289          
BLAST of mRNA_P-littoralis_Contig17.42.1 vs. uniprot
Match: UPI001CB8D7AC (uncharacterized protein LOC122583467 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8D7AC)

HSP 1 Score: 192 bits (488), Expect = 2.960e-53
Identity = 120/284 (42.25%), Postives = 170/284 (59.86%), Query Frame = 1
Query:   16 NVVGTVKRKNLTTSGKRAAIAELLKGSKNGKLGKGDLKRVGEQFQQHPQTISRLWKDYNKQKDAGEVDPNLDNKRKQKSGRKGIDLVSIQAALAGIPIKNRTTIRGVAAALGIPRSTLFDNLKKLGLRAASRYLKPLLTDGNKTARLERVLRWVSSSAGGGHNFHHFEDFVHIDEKWFYICQNGQKYYLYTDEEVPTRKVQHKSHITKVMFLAAVARPRFDSSRNRNFTGKLGIFPFTEQRGARRNSRNRAAGTLETKRV-EVTKEVFKKKVVEAIIPAIKACW 864
            N+  +  +KNLT + ++     L++   +GKL  G LK V   F     TISR+W D   Q   G +  ++ +K     GRK I +   Q  ++ IP++ RT IR +A A+ + +ST+   +K+  LR  +  +KP LTD NK ARLE  L  V+ S      FH   + +HIDEKWFY+ +  ++YYL  +E  P R  + K  ITKVMFLAAVARPRFD+S N  F+GK+GIFPFT    A+R+S+NR AGTL TK +  VTKEV +  + E ++PAI++ W
Sbjct:  183 NLTNSQGKKNLTNNQRQIIYKMLMQQIVDGKLQHGTLKHVATLFSVSKWTISRIWHDAKLQLQHGSL-VDVSSKMANVVGRKRIQIDYAQ--VSQIPLRRRTNIRSIAKAIDVSKSTMHRRIKEGALRPHTNAIKPDLTDDNKKARLEFCLSTVTRSL----TFHDMFNVIHIDEKWFYMSKPSKRYYLVPNEIEPLRTCKSKKFITKVMFLAAVARPRFDASGNEVFSGKIGIFPFTTLEPAKRSSKNRVAGTLITKPILSVTKEVTRSWLNEKVLPAIRSKW 459          
BLAST of mRNA_P-littoralis_Contig17.42.1 vs. uniprot
Match: A0A6A4ZEB5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZEB5_9STRA)

HSP 1 Score: 189 bits (480), Expect = 3.170e-53
Identity = 112/272 (41.18%), Postives = 162/272 (59.56%), Query Frame = 1
Query:   43 NLTTSGKRAAIAELLKGSKNGKLGKGDLKRVGEQFQQHPQTISRLWKDYNKQKDAGEVDPNLDNKRKQKSGRK-GIDLVSIQAALAGIPIKNRTTIRGVAAALGIPRSTLFDN-LKKLGLRAASRYLKPLLTDGNKTARLERVLRWVSSSAGGGHNFHHFEDFVHIDEKWFYICQNGQKYYLYTDEEVPTRKVQHKSHITKVMFLAAVARPRFDSSRNRNFTGKLGIFPFTEQRGARRNSRNRAAGTLETKRVEVTKEVFKKKVVEAIIPAI 852
            NL  S +RA    +L+ S  G L +G +  +  +  +   TI R+WK   + +  G+   N+ +K +  SGRK   +   I+AA+  +P   R T+R VAA++ IP +TL  + + +    A S +LKP LTD N   RLE  + ++ S  G    F    D VH+DEKWFY+ +N   YY+Y DE +  R VQ KSHITKVMFLAAVARPR+D +R   F GKLG++PF     A+R+S+NR  GT+ETK V VT +V++  + + ++PAI
Sbjct:   28 NLRDSERRALFERMLEISSRGVLPRGAIVNLAREIGRDRATIMRVWKRGLETRKDGDGAANVASKIRGNSGRKVQRERSDIEAAIRAVPHARRRTLRSVAASVVIPLTTLHRHKMSEPRFSAKSNWLKPRLTDANIKLRLEFAMSFLRSGPGDRQVFSDMHDIVHVDEKWFYLTKNKSVYYIYDDEVLAIRSVQSKSHITKVMFLAAVARPRYDFARREMFDGKLGVWPFVVDEPAKRSSKNRPKGTIETKPVSVTADVYQAMMFDKVLPAI 299          
BLAST of mRNA_P-littoralis_Contig17.42.1 vs. uniprot
Match: UPI000CD873B3 (uncharacterized protein LOC111883545 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD873B3)

HSP 1 Score: 187 bits (476), Expect = 5.600e-53
Identity = 116/281 (41.28%), Postives = 166/281 (59.07%), Query Frame = 1
Query:   28 TVKRKNLTTSGKRAAIAELLKGSKNGKLGKGDLKRVGEQFQQHPQTISRLWKDYNKQKDAGEVDPNLDNKRKQKSGRKGIDLVSIQAALAGIPIKNRTTIRGVAAALGIPRSTLFDNLKKLGLRAASRYLKPLLTDGNKTARLERVLRWVSSSAGGG-HNFHHFEDFVHIDEKWFYICQNGQKYYLYTDEEVPTRKVQHKSHITKVMFLAAVARPRFDSSRNRNFTGKLGIFPFTEQRGARRNSRNRAAGTLETKRV-EVTKEVFKKKVVEAIIPAIKACW 864
            T  +KN T   + A    LL+ S +G+L +G +  V  QF    +T+SR+W     Q + G +   L +   +  GRK + +   Q  +  IP++ R+ IR +A  L + +ST+   +K+  LR  +  +KP LT  NK ARLE  L  +S S       FH   + +HIDEKWFY+ +  ++YYL   E+ P R  Q K  ITKVMFLAAVARPRFD+S N  F+GK+GI+PFT    A+R+S+NR AGTLETK +  VTKEV +  ++E ++P I+A W
Sbjct:    7 THTKKNTTVEQRHAIYEALLQASFSGELQRGAISDVASQFSVSNRTVSRIWHQAKFQINHG-LPVVLSSNMAKVVGRKRVQVDFNQ--VLDIPLRRRSNIRSLANLLNVSKSTMHRRIKEGALRPHTNAIKPTLTHENKRARLEFCLSKISRSLSSNIPTFHDMFNVIHIDEKWFYMSKPSRRYYLVPGEDEPLRTCQSKKFITKVMFLAAVARPRFDASGNEVFSGKIGIYPFTRLEPAKRSSKNRVAGTLETKPILSVTKEVTRSWLIEKVLPDIRAKW 284          
BLAST of mRNA_P-littoralis_Contig17.42.1 vs. uniprot
Match: UPI001CB9A663 (uncharacterized protein LOC122597563 n=3 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9A663)

HSP 1 Score: 187 bits (474), Expect = 6.200e-53
Identity = 113/256 (44.14%), Postives = 157/256 (61.33%), Query Frame = 1
Query:  100 NGKLGKGDLKRVGEQFQQHPQTISRLWKDYNKQKDAGEVDPNLDNKRKQKSGRKGIDLVSIQAALAGIPIKNRTTIRGVAAALGIPRSTLFDNLKKLGLRAASRYLKPLLTDGNKTARLERVLRWVSSSAGGGHNFHHFEDFVHIDEKWFYICQNGQKYYLYTDEEVPTRKVQHKSHITKVMFLAAVARPRFDSSRNRNFTGKLGIFPFTEQRGARRNSRNRAAGTLETKRV-EVTKEVFKKKVVEAIIPAIKACW 864
            +GKL  G LK V   F    +TISR+W D   Q   G +  ++ +K     GRK I +   Q  ++ IP++ R  IR +A A+ + +ST+   +K+  LR  +  +KP LTD NK ARLE  L  V+ S      FH   + +HIDEKWFY+ +  ++YYL  +E  P R  + K  ITKVMFLAAVARPRFD+S N  F+GK+GIFPFT    A+R+S+NR AGTL TK +  VTKEV +  ++E ++PAI++ W
Sbjct:    8 DGKLQHGTLKHVATLFSVSKRTISRIWHDAKLQLQHGSL-VDVSSKMANVVGRKRIQIDYAQ--VSQIPLRRRKNIRSIAKAIDVSKSTMHRRIKEGALRPHTNAIKPDLTDDNKKARLEFCLSTVTRSL----TFHDIFNVIHIDEKWFYMSKPSKRYYLVPNEIEPLRTCKSKKFITKVMFLAAVARPRFDASGNEVFSGKIGIFPFTTLEPAKRSSKNRVAGTLITKPILSVTKEVTRSWLIEKVLPAIRSKW 256          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1R3HQ96_9ROSI1.090e-5642.40Transposase, Tc1-like protein n=1 Tax=Corchorus ol... [more]
A0A6P6TEQ3_COFAR5.230e-5641.38uncharacterized protein LOC113700698 n=2 Tax=Coffe... [more]
UPI000CD9BE6A2.640e-5541.05uncharacterized protein LOC111905831 n=2 Tax=Lactu... [more]
A0A6A4ZBD2_9STRA7.860e-5540.81Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
UPI0012635B1A1.350e-5439.08uncharacterized protein LOC116110731 n=1 Tax=Pista... [more]
A0A834LPB9_RHOSS3.210e-5441.49Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]
UPI001CB8D7AC2.960e-5342.25uncharacterized protein LOC122583467 n=1 Tax=Erige... [more]
A0A6A4ZEB5_9STRA3.170e-5341.18Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI000CD873B35.600e-5341.28uncharacterized protein LOC111883545 n=1 Tax=Lactu... [more]
UPI001CB9A6636.200e-5344.14uncharacterized protein LOC122597563 n=3 Tax=Erige... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:190392..191261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4565.Traes_2AL_228C3F4DD.1
Model size870
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.44e-54
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,37TMG@33090|Viridiplantae,3GG9M@35493|Streptophyta,3M2XW@4447|Liliopsida,3IN2T@38820|Poales
Cds size870
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789815.2807906-CDS-P-littoralis_Contig17:190391..1912611680789815.2807906-CDS-P-littoralis_Contig17:190391..191261Pylaiella littoralis U1_48CDSP-littoralis_Contig17 190392..191261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.42.1prot_P-littoralis_Contig17.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 190392..191261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.42.1

>prot_P-littoralis_Contig17.42.1 ID=prot_P-littoralis_Contig17.42.1|Name=mRNA_P-littoralis_Contig17.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=290bp
MSASGNVVGTVKRKNLTTSGKRAAIAELLKGSKNGKLGKGDLKRVGEQFQ
QHPQTISRLWKDYNKQKDAGEVDPNLDNKRKQKSGRKGIDLVSIQAALAG
IPIKNRTTIRGVAAALGIPRSTLFDNLKKLGLRAASRYLKPLLTDGNKTA
RLERVLRWVSSSAGGGHNFHHFEDFVHIDEKWFYICQNGQKYYLYTDEEV
PTRKVQHKSHITKVMFLAAVARPRFDSSRNRNFTGKLGIFPFTEQRGARR
NSRNRAAGTLETKRVEVTKEVFKKKVVEAIIPAIKACWM*
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mRNA from alignment at P-littoralis_Contig17:190392..191261+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.42.1 ID=mRNA_P-littoralis_Contig17.42.1|Name=mRNA_P-littoralis_Contig17.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=870bp|location=Sequence derived from alignment at P-littoralis_Contig17:190392..191261+ (Pylaiella littoralis U1_48)
ATGTCAGCGTCTGGCAACGTCGTCGGGACTGTGAAAAGAAAGAATCTCAC AACTTCTGGGAAAAGGGCAGCGATTGCGGAGCTGCTGAAGGGCAGCAAGA ACGGGAAGCTGGGCAAAGGTGACCTCAAGAGGGTTGGAGAACAGTTCCAG CAGCATCCTCAGACAATCAGCCGCCTCTGGAAGGATTACAACAAGCAGAA AGATGCTGGCGAAGTGGATCCTAATCTGGACAACAAGCGTAAGCAGAAAT CTGGTCGCAAAGGTATCGATCTGGTTTCTATTCAAGCAGCTCTAGCAGGA ATTCCCATCAAGAACCGCACCACGATTCGAGGAGTTGCTGCTGCGCTTGG TATCCCTAGGTCAACTCTGTTTGATAACCTCAAGAAGCTAGGGTTACGTG CTGCCTCTAGGTATCTGAAGCCGTTGTTAACTGATGGCAACAAGACAGCG AGACTGGAGCGGGTGTTGCGATGGGTCTCCAGCAGTGCTGGAGGTGGGCA CAATTTCCACCACTTCGAAGACTTCGTTCACATTGACGAGAAATGGTTTT ACATTTGCCAGAACGGGCAGAAGTACTACCTCTACACGGACGAGGAGGTT CCAACGCGCAAAGTGCAACACAAATCGCACATTACGAAGGTGATGTTCCT TGCCGCAGTGGCTCGGCCGCGGTTTGACAGCAGCCGCAACCGCAACTTCA CAGGCAAGCTCGGTATCTTCCCCTTCACCGAACAGCGCGGCGCGCGGCGC AACAGCAGGAACAGGGCGGCTGGGACGCTTGAGACGAAACGTGTGGAGGT GACGAAAGAGGTTTTCAAGAAGAAAGTGGTGGAAGCGATTATTCCTGCCA TCAAGGCTTGCTGGATGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:190392..191261+

>mRNA_P-littoralis_Contig17.42.1 ID=mRNA_P-littoralis_Contig17.42.1|Name=mRNA_P-littoralis_Contig17.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=870bp|location=Sequence derived from alignment at P-littoralis_Contig17:190392..191261+ (Pylaiella littoralis U1_48)
ATGTCAGCGTCTGGCAACGTCGTCGGGACTGTGAAAAGAAAGAATCTCAC
AACTTCTGGGAAAAGGGCAGCGATTGCGGAGCTGCTGAAGGGCAGCAAGA
ACGGGAAGCTGGGCAAAGGTGACCTCAAGAGGGTTGGAGAACAGTTCCAG
CAGCATCCTCAGACAATCAGCCGCCTCTGGAAGGATTACAACAAGCAGAA
AGATGCTGGCGAAGTGGATCCTAATCTGGACAACAAGCGTAAGCAGAAAT
CTGGTCGCAAAGGTATCGATCTGGTTTCTATTCAAGCAGCTCTAGCAGGA
ATTCCCATCAAGAACCGCACCACGATTCGAGGAGTTGCTGCTGCGCTTGG
TATCCCTAGGTCAACTCTGTTTGATAACCTCAAGAAGCTAGGGTTACGTG
CTGCCTCTAGGTATCTGAAGCCGTTGTTAACTGATGGCAACAAGACAGCG
AGACTGGAGCGGGTGTTGCGATGGGTCTCCAGCAGTGCTGGAGGTGGGCA
CAATTTCCACCACTTCGAAGACTTCGTTCACATTGACGAGAAATGGTTTT
ACATTTGCCAGAACGGGCAGAAGTACTACCTCTACACGGACGAGGAGGTT
CCAACGCGCAAAGTGCAACACAAATCGCACATTACGAAGGTGATGTTCCT
TGCCGCAGTGGCTCGGCCGCGGTTTGACAGCAGCCGCAACCGCAACTTCA
CAGGCAAGCTCGGTATCTTCCCCTTCACCGAACAGCGCGGCGCGCGGCGC
AACAGCAGGAACAGGGCGGCTGGGACGCTTGAGACGAAACGTGTGGAGGT
GACGAAAGAGGTTTTCAAGAAGAAAGTGGTGGAAGCGATTATTCCTGCCA
TCAAGGCTTGCTGGATGTAG
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