mRNA_P-littoralis_Contig17.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.37.1
Unique NamemRNA_P-littoralis_Contig17.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig17.37.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 9.390e-28
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1
Query:    1 AVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDNDITFPSELTMKRIGATSIDG 171
            AVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDNDITFPSELTMKRIGATS DG
Sbjct:   53 AVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDNDITFPSELTMKRIGATSTDG 109          
BLAST of mRNA_P-littoralis_Contig17.37.1 vs. uniprot
Match: A0A6H5KDP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP2_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 7.430e-14
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    1 AVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDNDITFPSE-LTMKRIGATSIDGGE 177
            AVKRNAG+V TEAK  AAA+GY++IAVPGFF+W ++N I      LT + +G TS++GG+
Sbjct:   53 AVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNGGQ 112          
BLAST of mRNA_P-littoralis_Contig17.37.1 vs. uniprot
Match: A0A6H5KFI6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI6_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 4.110e-13
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 AVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDNDITFPSE-LTMKRIGATSIDGG 174
            AVKRNAG+V TEAK  AAA+GY++IAVPGFF+W ++N I      LT + +G TS++GG
Sbjct:  101 AVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNGG 159          
BLAST of mRNA_P-littoralis_Contig17.37.1 vs. uniprot
Match: A0A6H5JZP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZP4_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 4.740e-13
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    1 AVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDNDITFPSE-LTMKRIGATSIDGGE 177
            AVKRNAG+V TEAK  AAA+GY++IAVPGFF+W ++N I      LT + +G TS++GG+
Sbjct:   53 AVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNGGK 112          
BLAST of mRNA_P-littoralis_Contig17.37.1 vs. uniprot
Match: A0A6H5JXZ8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ8_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.290e-12
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 AVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDN----DITFPSELTMKRIGATSIDGG 174
            AVKRNAG+V T+AK AAA QGY++IAVPGFF+W ++N    D      LT + +G TS+ GG
Sbjct:   54 AVKRNAGIVSTQAKHAAAPQGYKDIAVPGFFKWLQENLDKEDFFLQLWLTFEVMGKTSMKGG 115          
BLAST of mRNA_P-littoralis_Contig17.37.1 vs. uniprot
Match: A0A6H5JUY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY9_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 4.730e-12
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 AVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDNDITFPSE-LTMKRIGATSIDG 171
            AVKRNAG+V TEAK  AAA+GY++IAVPGFF+W ++N I      LT + +G TS++G
Sbjct:   53 AVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNG 110          
BLAST of mRNA_P-littoralis_Contig17.37.1 vs. uniprot
Match: A0A6H5JJR6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR6_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 9.120e-12
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 AVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDN---DITFPSE-LTMKRIGATSIDGGE 177
            AVKRNAG+V T+AK AA A+GY++IAVPGFF+W ++N   D  F    LT + +G TS+ GG+
Sbjct:   55 AVKRNAGIVSTQAKHAAVAKGYKDIAVPGFFKWLKENLEADQYFSQPWLTFEVMGRTSMSGGQ 117          
BLAST of mRNA_P-littoralis_Contig17.37.1 vs. uniprot
Match: A0A6H5JF32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF32_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 4.960e-11
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    1 AVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDN----DITFPSELTMKRIGATSIDG 171
            AVKRNAG+V T+AK A AAQGY++IAVPGFF+W ++N    D      LT + +G TS+ G
Sbjct:   54 AVKRNAGMVFTQAKHATAAQGYKDIAVPGFFKWLQENLDKEDFFLQPWLTFEVMGKTSMKG 114          
BLAST of mRNA_P-littoralis_Contig17.37.1 vs. uniprot
Match: A0A6H5JPS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS0_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 6.250e-11
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 AVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDN----DITFPSELTMKRIGATSIDGG 174
            AVKRNAG+V T+AK AAAAQGY++IAVP FF+W ++N    D      LT + +G TS+ GG
Sbjct:  450 AVKRNAGIVSTQAKHAAAAQGYKDIAVPSFFKWLQENLDKEDSFLQPWLTFEVMGKTSMKGG 511          
BLAST of mRNA_P-littoralis_Contig17.37.1 vs. uniprot
Match: A0A6H5KBX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBX2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.930e-9
Identity = 27/37 (72.97%), Postives = 34/37 (91.89%), Query Frame = 1
Query:    1 AVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDN 111
            AVKRNAG+V T+AK AAAAQGY++IAVPGFF+W ++N
Sbjct:   32 AVKRNAGIVSTQAKHAAAAQGYKDIAVPGFFKWLQEN 68          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE9.390e-2898.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDP2_9PHAE7.430e-1456.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFI6_9PHAE4.110e-1357.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JZP4_9PHAE4.740e-1356.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXZ8_9PHAE2.290e-1254.84Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUY9_9PHAE4.730e-1256.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJR6_9PHAE9.120e-1253.97Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF32_9PHAE4.960e-1154.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPS0_9PHAE6.250e-1154.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBX2_9PHAE3.930e-972.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:128647..128832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size187
Hectar predicted targeting categoryother localisation
Exons1
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789814.6543293-CDS-P-littoralis_Contig17:128646..1288321680789814.6543293-CDS-P-littoralis_Contig17:128646..128832Pylaiella littoralis U1_48CDSP-littoralis_Contig17 128647..128832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.37.1prot_P-littoralis_Contig17.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 128647..128832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.37.1

>prot_P-littoralis_Contig17.37.1 ID=prot_P-littoralis_Contig17.37.1|Name=mRNA_P-littoralis_Contig17.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=62bp
AVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDNDITFPSELTMKRI
GATSIDGGEGE*
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mRNA from alignment at P-littoralis_Contig17:128647..128832-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.37.1 ID=mRNA_P-littoralis_Contig17.37.1|Name=mRNA_P-littoralis_Contig17.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig17:128647..128832- (Pylaiella littoralis U1_48)
GCGGTCAAGCGCAATGCTGGCGTGGTGGGCACCGAAGCGAAGCGCGCTGC TGCTGCCCAAGGCTACAGAGAGATCGCTGTGCCAGGATTTTTCAGATGGG CGAGGGACAACGACATCACGTTCCCTTCTGAGTTGACCATGAAGAGGATT GGGGCCACCTCCATCGACGGAGGTGAGGGAGAGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:128647..128832-

>mRNA_P-littoralis_Contig17.37.1 ID=mRNA_P-littoralis_Contig17.37.1|Name=mRNA_P-littoralis_Contig17.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig17:128647..128832- (Pylaiella littoralis U1_48)
GCGGTCAAGCGCAATGCTGGCGTGGTGGGCACCGAAGCGAAGCGCGCTGC
TGCTGCCCAAGGCTACAGAGAGATCGCTGTGCCAGGATTTTTCAGATGGG
CGAGGGACAACGACATCACGTTCCCTTCTGAGTTGACCATGAAGAGGATT
GGGGCCACCTCCATCGACGGAGGTGAGGGAGAGTAG
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