mRNA_P-littoralis_Contig17.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.32.1
Unique NamemRNA_P-littoralis_Contig17.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig17.32.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 3.810e-86
Identity = 162/179 (90.50%), Postives = 163/179 (91.06%), Query Frame = 1
Query:    1 KPDQEGEKGKTAVIKKERNPDDDDVSVDDDDVPSXXEQAGDDGDYPPRPDGWMHPLLLIYCFIGRPSDSEDPDLATARKTSGPPKRGSKRXXXXXXXXXXXXXX------ESETESGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTL 519
            KPDQEGEKGKTAVIKKERNPDDDD SV    VPS  EQAGDDG+YPPRPDGWMHPLLLIYCFIGRPSDSEDPDLATARKTSGPPKRGSKR  XXXXXXXXXXXX      ESETE GGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTL
Sbjct:  211 KPDQEGEKGKTAVIKKERNPDDDDASVXXXXVPSEDEQAGDDGEYPPRPDGWMHPLLLIYCFIGRPSDSEDPDLATARKTSGPPKRGSKRKSXXXXXXXXXXXXXXXSTGESETEPGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTL 389          
BLAST of mRNA_P-littoralis_Contig17.32.1 vs. uniprot
Match: D7FSK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK1_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 6.410e-25
Identity = 62/115 (53.91%), Postives = 72/115 (62.61%), Query Frame = 1
Query:  124 DGDYPPRPDGWMHPLLLIYCFIGRPSDSEDPDLATARKTSGPPKRGSKRXXXXXXXXXXXXXXESETESGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFR 468
            DG YP RPD WMHP LL YC IGRPS SEDPDL T RKTSGP  RG K+              ES +E+ G  +D +L+S AIR FAGAGE +SRAQV+K+   V +  A E  R
Sbjct:  132 DGGYPDRPDKWMHPYLLTYCLIGRPSSSEDPDLRTTRKTSGPKGRGGKQKSKRGSPGTSD---ESGSETSGAYTDVDLSSNAIRMFAGAGESRSRAQVKKEHEAVAAANAQEQAR 243          
BLAST of mRNA_P-littoralis_Contig17.32.1 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.830e-22
Identity = 60/120 (50.00%), Postives = 73/120 (60.83%), Query Frame = 1
Query:  127 GDYPPRPDGWMHPLLLIYCFIGRPSDSEDPDLATARKTSGPPKRGSKRXXXXXXXXXXXXXXESETESGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQ 486
            G YP RP+ WMHP LL  C +GRPS SEDPDL TARKTSGP  RG K+               S +E+ G  ++ +L+S+AIR FAG GE QSRAQV+K+ A V +  A E   Q R  Q
Sbjct:  117 GGYPDRPNKWMHPYLLTCCLVGRPSSSEDPDLRTARKTSGPKGRGGKQKAKKGSPSTSDG---SGSETSGAYTEVDLSSSAIRMFAGGGEIQSRAQVKKEHAAVAAANAQEQAEQARRVQ 233          
BLAST of mRNA_P-littoralis_Contig17.32.1 vs. uniprot
Match: A0A6H5JWP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP9_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.120e-22
Identity = 62/132 (46.97%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  124 DGDYPPRPDGWMHPLLLIYCFIGRPSDSEDPDLATARKTSGPPKRGSKRXXXXXXXXXXXXXXESETESGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTL 519
            DG YP R + WMHP LL YC IGRPS SEDPDL TARKTSGP  R  K+               S +E+ G  ++  L+S+AIRTFAGA E QSRAQV+ +   V +  A E  R+ + A   ++  AV+ L
Sbjct:   91 DGGYPDRSNKWMHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRAGKQKAQKESPSTSDG---SGSETSGAYTEVGLSSSAIRTFAGADEIQSRAQVKNEHTAVAAANAQEQARRVQQAHTGKLVTAVEAL 219          
BLAST of mRNA_P-littoralis_Contig17.32.1 vs. uniprot
Match: A0A6H5KPB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB5_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 7.910e-21
Identity = 62/132 (46.97%), Postives = 79/132 (59.85%), Query Frame = 1
Query:  124 DGDYPPRPDGWMHPLLLIYCFIGRPSDSEDPDLATARKTSGPPKRGSKRXXXXXXXXXXXXXXESETESGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTL 519
            DG  P RP+ WMHP LL YC IGRPS SEDPDL TARKTSG   RG K+               S +E+ G  ++ +L+S+AIR FAG GE QSRAQ++K+ A V +  A E  R+ + A   ++  AV  L
Sbjct:   77 DGGCPDRPNKWMHPYLLTYCLIGRPSSSEDPDLRTARKTSGLKGRGGKQNAKKGSPSTIDG---SGSETSGAYTEVDLSSSAIRMFAGTGEIQSRAQMKKEHAVVAAANAQEQARRVQQAHTGKLVTAVGAL 205          
BLAST of mRNA_P-littoralis_Contig17.32.1 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.660e-20
Identity = 56/104 (53.85%), Postives = 66/104 (63.46%), Query Frame = 1
Query:  157 MHPLLLIYCFIGRPSDSEDPDLATARKTSGPPKRGSKRXXXXXXXXXXXXXXESETESGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFR 468
            MHP LL YC IGRPS SEDPDL TARKTSGP  RG K+               S +E+ G  +D +L+S+AIR FAGAGE QSRAQV+K+ A V +  A E  R
Sbjct:    1 MHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRGGKQKAKKGSPSTSDG---SGSETSGAYTDVDLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQAR 101          
BLAST of mRNA_P-littoralis_Contig17.32.1 vs. uniprot
Match: A0A6H5K3M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.670e-19
Identity = 59/121 (48.76%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  157 MHPLLLIYCFIGRPSDSEDPDLATARKTSGPPKRGSKRXXXXXXXXXXXXXXESETESGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTL 519
            MHP LL YC IGRPS SEDPDL TARKTSGP  RG K+               S +E+ G  +D +L+S+AIR FAGAGE QSRAQV+K+ A V +  A E   + + A   ++  AV+ L
Sbjct:    1 MHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRGGKQKVKNGSPSTSDG---SGSETSGAYTDVDLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQAPRVQQAHTGKLVTAVEAL 118          
BLAST of mRNA_P-littoralis_Contig17.32.1 vs. uniprot
Match: A0A6H5JGS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS6_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.660e-17
Identity = 56/127 (44.09%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  124 DGDYPPRPDGWMHPLLLIYCFIGRPSDSEDPDLATARKTSGPPKRGSKRXXXXXXXXXXXXXXESETESGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQ-GDQIT 501
            DG+YP R + WMHP LL YC IGR S SEDP+L TARKT G                       S + + G  ++ +L+S+AIR FAGAG+ QSRAQV+K+ A V +  A E  R+ + A  G Q+T
Sbjct:  193 DGEYPDRGNKWMHPYLLTYCLIGRASSSEDPELRTARKTDG-----------------------SGSRTSGAHTEVDLSSSAIRMFAGAGKIQSRAQVKKEYAAVAAANAQEQVRRVQQAHTGKQVT 296          
BLAST of mRNA_P-littoralis_Contig17.32.1 vs. uniprot
Match: A0A6H5KF57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF57_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.420e-16
Identity = 58/117 (49.57%), Postives = 72/117 (61.54%), Query Frame = 1
Query:   67 DDVSVDDDDVPSXXEQAGDDGDYPPRPDGWMHPLLLIYCFIGRPSDSEDPDLATARKTSGPPKRGSKRXXXXXXXXXXXXXX-----ESETESGGVGSDGNLTSTAIRTFAGAGEPQ 402
            DD   + DD PS  E + ++G +P RP+ WMH  LL +C IGRP  SEDPDL TARKTSGP  RG+  XXXXXX             ES +E+ G  ++ +L+S AIR F GAGE Q
Sbjct:  151 DDTPGNGDDAPSE-EISREEGGFPQRPNKWMHQYLLTFCLIGRPCSSEDPDLRTARKTSGPKGRGASXXXXXXXKQKAKKASSGTSDESGSEASGAYTEVDLSSNAIRIFTGAGEIQ 266          
BLAST of mRNA_P-littoralis_Contig17.32.1 vs. uniprot
Match: A0A6H5KBX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBX2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.020e-15
Identity = 57/114 (50.00%), Postives = 69/114 (60.53%), Query Frame = 1
Query:   88 DDVPSXXEQAGDDGDYPPRPDGWMHPLLLIYCFIGRPSDSEDPDLATARKTSGPPKRGSKRXXXXXXXXXXXXXX-----ESETESGGVGSDGNLTSTAIRTFAGAGEPQSRAQ 414
            DD PS  E   ++G +P RP  WMH  LL +C IGRP  SEDPDL TARKTSG   RG+  XXXXX              ES +E+ G  ++ +L+S AIR F GAGE QS+AQ
Sbjct:  174 DDAPSE-EITREEGGFPQRPKKWMHQYLLTFCLIGRPCSSEDPDLRTARKTSGAKGRGAXXXXXXXGKQKAKKGSPGTSDESGSEASGAYTEVDLSSNAIRMFTGAGEIQSQAQ 286          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE3.810e-8690.50Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FSK1_ECTSI6.410e-2553.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXV2_9PHAE1.830e-2250.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWP9_9PHAE2.120e-2246.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPB5_9PHAE7.910e-2146.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU95_9PHAE2.660e-2053.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3M7_9PHAE1.670e-1948.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGS6_9PHAE5.660e-1744.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF57_9PHAE3.420e-1649.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBX2_9PHAE1.020e-1550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:124916..125435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size520
Hectar predicted targeting categoryother localisation
Exons1
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789814.5700638-CDS-P-littoralis_Contig17:124916..1254351680789814.5700638-CDS-P-littoralis_Contig17:124916..125435Pylaiella littoralis U1_48CDSP-littoralis_Contig17 124917..125435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.32.1prot_P-littoralis_Contig17.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 124917..125435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.32.1

>prot_P-littoralis_Contig17.32.1 ID=prot_P-littoralis_Contig17.32.1|Name=mRNA_P-littoralis_Contig17.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=173bp
KPDQEGEKGKTAVIKKERNPDDDDVSVDDDDVPSEDEQAGDDGDYPPRPD
GWMHPLLLIYCFIGRPSDSEDPDLATARKTSGPPKRGSKRKSEDGGGSSK
SSTEESETESGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKA
ANEAFRQKRLAQGDQITKAVKTL
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mRNA from alignment at P-littoralis_Contig17:124916..125435-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.32.1 ID=mRNA_P-littoralis_Contig17.32.1|Name=mRNA_P-littoralis_Contig17.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=520bp|location=Sequence derived from alignment at P-littoralis_Contig17:124916..125435- (Pylaiella littoralis U1_48)
AAGCCAGACCAGGAAGGGGAGAAGGGCAAGACGGCTGTCATCAAGAAGGA AAGGAACCCGGACGATGACGATGTGAGTGTGGACGACGACGACGTGCCTT CTGAGGACGAACAGGCGGGTGATGACGGGGATTACCCGCCAAGGCCCGAC GGATGGATGCACCCATTGCTCCTCATCTACTGTTTTATCGGAAGGCCCAG TGACAGCGAGGATCCCGACCTGGCGACCGCCAGGAAGACGAGCGGCCCAC CGAAGCGGGGGTCGAAGCGGAAGTCGGAGGACGGGGGGGGCAGCAGCAAA AGCAGCACGGAGGAAAGCGAGACTGAGTCAGGCGGGGTAGGGTCCGATGG TAACCTCACGTCAACAGCTATCCGGACATTCGCCGGGGCCGGCGAGCCGC AAAGCCGAGCGCAGGTGCAAAAGCAGCAGGCGGAGGTGAAATCAAAGGCT GCCAATGAGGCCTTCCGCCAGAAACGACTCGCCCAAGGTGACCAGATTAC TAAGGCCGTGAAGACGCTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:124916..125435-

>mRNA_P-littoralis_Contig17.32.1 ID=mRNA_P-littoralis_Contig17.32.1|Name=mRNA_P-littoralis_Contig17.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=519bp|location=Sequence derived from alignment at P-littoralis_Contig17:124916..125435- (Pylaiella littoralis U1_48)
AAGCCAGACCAGGAAGGGGAGAAGGGCAAGACGGCTGTCATCAAGAAGGA
AAGGAACCCGGACGATGACGATGTGAGTGTGGACGACGACGACGTGCCTT
CTGAGGACGAACAGGCGGGTGATGACGGGGATTACCCGCCAAGGCCCGAC
GGATGGATGCACCCATTGCTCCTCATCTACTGTTTTATCGGAAGGCCCAG
TGACAGCGAGGATCCCGACCTGGCGACCGCCAGGAAGACGAGCGGCCCAC
CGAAGCGGGGGTCGAAGCGGAAGTCGGAGGACGGGGGGGGCAGCAGCAAA
AGCAGCACGGAGGAAAGCGAGACTGAGTCAGGCGGGGTAGGGTCCGATGG
TAACCTCACGTCAACAGCTATCCGGACATTCGCCGGGGCCGGCGAGCCGC
AAAGCCGAGCGCAGGTGCAAAAGCAGCAGGCGGAGGTGAAATCAAAGGCT
GCCAATGAGGCCTTCCGCCAGAAACGACTCGCCCAAGGTGACCAGATTAC
TAAGGCCGTGAAGACGCTG
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