mRNA_P-littoralis_Contig17.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.31.1
Unique NamemRNA_P-littoralis_Contig17.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:123582..123919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size340
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.21e-05
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size108
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789814.5242336-CDS-P-littoralis_Contig17:123581..1236891680789814.5242336-CDS-P-littoralis_Contig17:123581..123689Pylaiella littoralis U1_48CDSP-littoralis_Contig17 123582..123689 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789814.5386605-UTR-P-littoralis_Contig17:123689..1239191680789814.5386605-UTR-P-littoralis_Contig17:123689..123919Pylaiella littoralis U1_48UTRP-littoralis_Contig17 123690..123919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.31.1prot_P-littoralis_Contig17.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 123582..123689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.31.1

>prot_P-littoralis_Contig17.31.1 ID=prot_P-littoralis_Contig17.31.1|Name=mRNA_P-littoralis_Contig17.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=36bp
EAAHAVLKRKLTTNFLYRKKHKKDIVWPSRKRPEI*
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mRNA from alignment at P-littoralis_Contig17:123582..123919+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.31.1 ID=mRNA_P-littoralis_Contig17.31.1|Name=mRNA_P-littoralis_Contig17.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=338bp|location=Sequence derived from alignment at P-littoralis_Contig17:123582..123919+ (Pylaiella littoralis U1_48)
GAGGCCGCCCATGCGGTGCTCAAGCGGAAGCTGACCACGAACTTCCTGTA
CCGCAAGAAGCACAAGAAGGACATTGTTTGGCCTTCCAGGAAGAGGCCTG
AGATTTAACCGTAGAAATCTGTTGTTCGTTTCCCTCTCTTGGGATGCCGC
TTTTCTATTTTCTATTAATTTCGTAAGGGTTACGCGCTGTCGCGTGTGTT
GGTGTGCGACGTTTTGTGTCATGTAGTAGGGGAGGAAAGCGTCTACTGTA
CCAGTTCGTGTTTGGCAATGGCAGCGTAGAATACGAAGGAGACGCGGGTG
AAATCTTTTTTTATGATCGTACCGTTCGTTAATTTTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:123582..123919+

>mRNA_P-littoralis_Contig17.31.1 ID=mRNA_P-littoralis_Contig17.31.1|Name=mRNA_P-littoralis_Contig17.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=108bp|location=Sequence derived from alignment at P-littoralis_Contig17:123582..123919+ (Pylaiella littoralis U1_48)
GAGGCCGCCCATGCGGTGCTCAAGCGGAAGCTGACCACGAACTTCCTGTA
CCGCAAGAAGCACAAGAAGGACATTGTTTGGCCTTCCAGGAAGAGGCCTG
AGATTTAA
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