mRNA_P-littoralis_Contig17.29.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 469 bits (1207), Expect = 4.160e-163 Identity = 222/228 (97.37%), Postives = 223/228 (97.81%), Query Frame = 1
Query: 1 TAQRDAYGRRCHPVEHKVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 684
T QRDAYGRRCHPVEHKVLACLTILGRG+VFGSIYNL WMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQG SYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTV KKDGTTETLK CYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF
Sbjct: 111 TTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 338
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 360 bits (923), Expect = 6.060e-121 Identity = 168/228 (73.68%), Postives = 191/228 (83.77%), Query Frame = 1
Query: 1 TAQRDAYGRRCHPVEHKVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 684
T+ DA R+ HPVEHKVLA LTILGRG+ F SIY + WMS TVQ +FH+FC+HFA EMYDEHI+LPSE+NGELD VM QY++LGF GAMGS DVTHIGWS+CPYN SYTGKEG PTVGYQVTVNHAGR +AVTEGFT STNDKT +C D V++IRTD QY EK F V +DGTT TLK CYL+VDNGYHKW++L+EP+KYPLSE D+LFSKRLESVRKDVECF
Sbjct: 82 TSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECF 309
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 338 bits (868), Expect = 6.080e-112 Identity = 168/256 (65.62%), Postives = 188/256 (73.44%), Query Frame = 1
Query: 1 TAQRDAYGRRCHPVEHKVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYA----------------------------EKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 684
TA DA G HPVEHKVLA LTILGRG+ F SIY + WMS TVQ +FH+FC HFA EMYDE I LP+EE+G+LD VM QY++LGF GA+GS DVTHI WSRCPYNQ SYTGKEG PT+ YQVTV+HAGR +AVTEGFTGSTNDKTI+C D AV++I TDK Y EK F V +DGTT TLK CYL+VDNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECF
Sbjct: 69 TAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECF 324
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI) HSP 1 Score: 313 bits (803), Expect = 1.510e-102 Identity = 147/206 (71.36%), Postives = 168/206 (81.55%), Query Frame = 1
Query: 1 TAQRDAYGRRCHPVEHKVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYP 618
TA DA GR+ HPVEHKVLA LTILGRG+ F SIY + WMS TVQ +FH FC+HFA EMYDEHI+LPSE+NGELD VM QY++LGF GAMGS DVTHI W++CPYN SYTGKEG PT+GYQVTVNHAGR AVTEGFTGSTNDKTI+C D AV++IRTDKQY EK F V +DGTT TLK CYL+VDNGYHKW++L+ + P
Sbjct: 109 TAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILMGAHQVP 314
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 294 bits (752), Expect = 1.100e-93 Identity = 140/228 (61.40%), Postives = 174/228 (76.32%), Query Frame = 1
Query: 1 TAQRDAYGRRCHPVEHKVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 684
T + D GR+ PVE KVLACL IL RG+VF IY++ ++S TV FH+FC++FA E+YDE+++LP+ E+ L +VM QY+++GFPGA+GSTDVTHI W CPYNQ YTGKEGKPTV +QVTV+H+GRVLAVT GFTG+TNDKTII D+AV RIRTD Y E+ + + +DG K CYL+VDNGYHKWR LI PSK P+ DL+FSKRLES RKDVEC+
Sbjct: 158 TGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGED--LRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECY 383
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE) HSP 1 Score: 283 bits (725), Expect = 8.060e-92 Identity = 139/212 (65.57%), Postives = 161/212 (75.94%), Query Frame = 1
Query: 49 KVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 684
+VLA LTILG+G+ F SI+ + WMS TVQ VFH+FC FA EMYDEHI LP+EE+G+L VM QY++LG CPYNQ SYTGK+ PT+ YQVTV+HA R +AVTEGFTGSTNDKTI+C D AVD+IRTDKQY EK F + +DGTT TLK CY + DNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECF
Sbjct: 20 QVLAWLTILGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECF 214
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 288 bits (737), Expect = 1.300e-91 Identity = 145/228 (63.60%), Postives = 169/228 (74.12%), Query Frame = 1
Query: 1 TAQRDAYGRRCHPVEHKVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 684
T ++DA GRR PV+ KVLACL IL RG+ F IY++ ++S T FH+F +FA EMY EHIFLP+ + + +VM QY++LGF GA GSTDVTHI W CPYNQ SYTGKEG PTV YQVTV+H RVLAVT GFTGSTNDK+II D AV +IR D Y+EK FTV + DGT LK CYL+VDNGYHKW LI PSKYP+ + DL FSKRLESVRKDVECF
Sbjct: 142 TGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQK--KVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECF 367
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI) HSP 1 Score: 281 bits (720), Expect = 1.390e-91 Identity = 131/169 (77.51%), Postives = 148/169 (87.57%), Query Frame = 1
Query: 178 MYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 684
MYDEHI LP+EE+G+LD V+ QY++LGF GAMGS DVTHI WSRCPYNQ SYTGKEG PT+GYQVTV+HAGR +AVTEGFTGSTNDKT +C D AV++IRTDKQY EK F V +DGTT TLK CY++VDNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECF
Sbjct: 1 MYDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECF 169
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 285 bits (729), Expect = 2.260e-91 Identity = 137/225 (60.89%), Postives = 170/225 (75.56%), Query Frame = 1
Query: 13 DAYGRRCHPVEH-KVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 684
D R C P H +VLACL IL RG+VF IY++ ++S TV FH+FC++FA E+YDE+++LP+ E+ L +VM QY+++GFPGA+GSTDVTHI W CPYNQ YTGKEGKPTV +QVTV+H+GRVLAVT GFTG+TNDKTII D+AV RIRTD Y E+ + + +DG K CYL+VDNGYHKWR LI PSK P+ DL+FSKRLES RKDVEC+
Sbjct: 70 DLSARCCFPPPHTQVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGED--LRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECY 292
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: A0A6H5KGU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU8_9PHAE) HSP 1 Score: 246 bits (629), Expect = 9.120e-79 Identity = 134/237 (56.54%), Postives = 160/237 (67.51%), Query Frame = 1
Query: 46 HKVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFSAS*RCASES*SSP*PTRSRSAST 756
H VLA LTILG G+ F SIY + W+S VQ +FH+FC+HF E+YDEHI+L SE+NGELD VM QY++LGF GAMGS DVTH TG EG PT+GYQVT TNDKTI+C D AV++IRTDKQ EK F + +DGTT TLK CYL+VDNG +W++L+EP+KYPLSE D+LFSKR+ESVRKDVECF + S SP T SRSAST
Sbjct: 4 HDVLAWLTILGSGNCFASIYQMSWVSAKAVQTMFHKFCKHFPRELYDEHIYLSSEQNGELDHVMEQYDRLGFSGAMGSMDVTH--------------TGIEGVPTIGYQVT-----------------TNDKTIVCWDAAVEKIRTDKQCTEKTFDMYNEDGTTTTLKGCYLLVDNG--EWKILMEPTKYPLSENDILFSKRMESVRKDVECFFGILKGRSRILVSPWRTTSRSAST 207 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig17.29.1 >prot_P-littoralis_Contig17.29.1 ID=prot_P-littoralis_Contig17.29.1|Name=mRNA_P-littoralis_Contig17.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=193bp MSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGback to top mRNA from alignment at P-littoralis_Contig17:121453..123482+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig17.29.1 ID=mRNA_P-littoralis_Contig17.29.1|Name=mRNA_P-littoralis_Contig17.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2030bp|location=Sequence derived from alignment at P-littoralis_Contig17:121453..123482+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig17:121453..123482+ >mRNA_P-littoralis_Contig17.29.1 ID=mRNA_P-littoralis_Contig17.29.1|Name=mRNA_P-littoralis_Contig17.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=579bp|location=Sequence derived from alignment at P-littoralis_Contig17:121453..123482+ (Pylaiella littoralis U1_48)back to top |