mRNA_P-littoralis_Contig17.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.29.1
Unique NamemRNA_P-littoralis_Contig17.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 469 bits (1207), Expect = 4.160e-163
Identity = 222/228 (97.37%), Postives = 223/228 (97.81%), Query Frame = 1
Query:    1 TAQRDAYGRRCHPVEHKVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 684
            T QRDAYGRRCHPVEHKVLACLTILGRG+VFGSIYNL WMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQG SYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTV KKDGTTETLK CYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF
Sbjct:  111 TTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 338          
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 360 bits (923), Expect = 6.060e-121
Identity = 168/228 (73.68%), Postives = 191/228 (83.77%), Query Frame = 1
Query:    1 TAQRDAYGRRCHPVEHKVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 684
            T+  DA  R+ HPVEHKVLA LTILGRG+ F SIY + WMS  TVQ +FH+FC+HFA EMYDEHI+LPSE+NGELD VM QY++LGF GAMGS DVTHIGWS+CPYN   SYTGKEG PTVGYQVTVNHAGR +AVTEGFT STNDKT +C D  V++IRTD QY EK F V  +DGTT TLK CYL+VDNGYHKW++L+EP+KYPLSE D+LFSKRLESVRKDVECF
Sbjct:   82 TSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECF 309          
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 338 bits (868), Expect = 6.080e-112
Identity = 168/256 (65.62%), Postives = 188/256 (73.44%), Query Frame = 1
Query:    1 TAQRDAYGRRCHPVEHKVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYA----------------------------EKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 684
            TA  DA G   HPVEHKVLA LTILGRG+ F SIY + WMS  TVQ +FH+FC HFA EMYDE I LP+EE+G+LD VM QY++LGF GA+GS DVTHI WSRCPYNQ  SYTGKEG PT+ YQVTV+HAGR +AVTEGFTGSTNDKTI+C D AV++I TDK Y                             EK F V  +DGTT TLK CYL+VDNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECF
Sbjct:   69 TAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECF 324          
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 313 bits (803), Expect = 1.510e-102
Identity = 147/206 (71.36%), Postives = 168/206 (81.55%), Query Frame = 1
Query:    1 TAQRDAYGRRCHPVEHKVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYP 618
            TA  DA GR+ HPVEHKVLA LTILGRG+ F SIY + WMS  TVQ +FH FC+HFA EMYDEHI+LPSE+NGELD VM QY++LGF GAMGS DVTHI W++CPYN   SYTGKEG PT+GYQVTVNHAGR  AVTEGFTGSTNDKTI+C D AV++IRTDKQY EK F V  +DGTT TLK CYL+VDNGYHKW++L+   + P
Sbjct:  109 TAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILMGAHQVP 314          
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 294 bits (752), Expect = 1.100e-93
Identity = 140/228 (61.40%), Postives = 174/228 (76.32%), Query Frame = 1
Query:    1 TAQRDAYGRRCHPVEHKVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 684
            T + D  GR+  PVE KVLACL IL RG+VF  IY++ ++S  TV   FH+FC++FA E+YDE+++LP+ E+  L +VM QY+++GFPGA+GSTDVTHI W  CPYNQ   YTGKEGKPTV +QVTV+H+GRVLAVT GFTG+TNDKTII  D+AV RIRTD  Y E+ + +  +DG     K CYL+VDNGYHKWR LI PSK P+   DL+FSKRLES RKDVEC+
Sbjct:  158 TGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGED--LRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECY 383          
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 8.060e-92
Identity = 139/212 (65.57%), Postives = 161/212 (75.94%), Query Frame = 1
Query:   49 KVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 684
            +VLA LTILG+G+ F SI+ + WMS  TVQ VFH+FC  FA EMYDEHI LP+EE+G+L  VM QY++LG                 CPYNQ  SYTGK+  PT+ YQVTV+HA R +AVTEGFTGSTNDKTI+C D AVD+IRTDKQY EK F +  +DGTT TLK CY + DNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECF
Sbjct:   20 QVLAWLTILGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECF 214          
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 288 bits (737), Expect = 1.300e-91
Identity = 145/228 (63.60%), Postives = 169/228 (74.12%), Query Frame = 1
Query:    1 TAQRDAYGRRCHPVEHKVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 684
            T ++DA GRR  PV+ KVLACL IL RG+ F  IY++ ++S  T    FH+F  +FA EMY EHIFLP+ +  +  +VM QY++LGF GA GSTDVTHI W  CPYNQ  SYTGKEG PTV YQVTV+H  RVLAVT GFTGSTNDK+II  D AV +IR D  Y+EK FTV + DGT   LK CYL+VDNGYHKW  LI PSKYP+ + DL FSKRLESVRKDVECF
Sbjct:  142 TGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQK--KVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECF 367          
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 1.390e-91
Identity = 131/169 (77.51%), Postives = 148/169 (87.57%), Query Frame = 1
Query:  178 MYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 684
            MYDEHI LP+EE+G+LD V+ QY++LGF GAMGS DVTHI WSRCPYNQ  SYTGKEG PT+GYQVTV+HAGR +AVTEGFTGSTNDKT +C D AV++IRTDKQY EK F V  +DGTT TLK CY++VDNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECF
Sbjct:    1 MYDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECF 169          
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 285 bits (729), Expect = 2.260e-91
Identity = 137/225 (60.89%), Postives = 170/225 (75.56%), Query Frame = 1
Query:   13 DAYGRRCHPVEH-KVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 684
            D   R C P  H +VLACL IL RG+VF  IY++ ++S  TV   FH+FC++FA E+YDE+++LP+ E+  L +VM QY+++GFPGA+GSTDVTHI W  CPYNQ   YTGKEGKPTV +QVTV+H+GRVLAVT GFTG+TNDKTII  D+AV RIRTD  Y E+ + +  +DG     K CYL+VDNGYHKWR LI PSK P+   DL+FSKRLES RKDVEC+
Sbjct:   70 DLSARCCFPPPHTQVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGED--LRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECY 292          
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Match: A0A6H5KGU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU8_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 9.120e-79
Identity = 134/237 (56.54%), Postives = 160/237 (67.51%), Query Frame = 1
Query:   46 HKVLACLTILGRGDVFGSIYNLPWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFSAS*RCASES*SSP*PTRSRSAST 756
            H VLA LTILG G+ F SIY + W+S   VQ +FH+FC+HF  E+YDEHI+L SE+NGELD VM QY++LGF GAMGS DVTH              TG EG PT+GYQVT                 TNDKTI+C D AV++IRTDKQ  EK F +  +DGTT TLK CYL+VDNG  +W++L+EP+KYPLSE D+LFSKR+ESVRKDVECF    +  S    SP  T SRSAST
Sbjct:    4 HDVLAWLTILGSGNCFASIYQMSWVSAKAVQTMFHKFCKHFPRELYDEHIYLSSEQNGELDHVMEQYDRLGFSGAMGSMDVTH--------------TGIEGVPTIGYQVT-----------------TNDKTIVCWDAAVEKIRTDKQCTEKTFDMYNEDGTTTTLKGCYLLVDNG--EWKILMEPTKYPLSENDILFSKRMESVRKDVECFFGILKGRSRILVSPWRTTSRSAST 207          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE4.160e-16397.37Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE6.060e-12173.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE6.080e-11265.63DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FPI7_ECTSI1.510e-10271.36Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5JPH7_9PHAE1.100e-9361.40Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE8.060e-9265.57DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE1.300e-9163.60Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI1.390e-9177.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY50_9PHAE2.260e-9160.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGU8_9PHAE9.120e-7956.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:121453..123482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size830
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.95e-93
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size579
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789814.436424-UTR-P-littoralis_Contig17:121452..1215031680789814.436424-UTR-P-littoralis_Contig17:121452..121503Pylaiella littoralis U1_48UTRP-littoralis_Contig17 121453..121503 +
1680789814.4507046-UTR-P-littoralis_Contig17:122502..1225681680789814.4507046-UTR-P-littoralis_Contig17:122502..122568Pylaiella littoralis U1_48UTRP-littoralis_Contig17 122503..122568 +
1680789814.489668-UTR-P-littoralis_Contig17:123348..1234821680789814.489668-UTR-P-littoralis_Contig17:123348..123482Pylaiella littoralis U1_48UTRP-littoralis_Contig17 123349..123482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789814.4638274-CDS-P-littoralis_Contig17:122568..1230361680789814.4638274-CDS-P-littoralis_Contig17:122568..123036Pylaiella littoralis U1_48CDSP-littoralis_Contig17 122569..123036 +
1680789814.4807744-CDS-P-littoralis_Contig17:123237..1233481680789814.4807744-CDS-P-littoralis_Contig17:123237..123348Pylaiella littoralis U1_48CDSP-littoralis_Contig17 123238..123348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.29.1prot_P-littoralis_Contig17.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 122569..123348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.29.1

>prot_P-littoralis_Contig17.29.1 ID=prot_P-littoralis_Contig17.29.1|Name=mRNA_P-littoralis_Contig17.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=193bp
MSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPG
AMGSTDVTHIGWSRCPYNQGCSYTGKEGKPTVGYQVTVNHAGRVLAVTEG
FTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVRKKDGTTETLKWCYLIV
DNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFSAS*
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mRNA from alignment at P-littoralis_Contig17:121453..123482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.29.1 ID=mRNA_P-littoralis_Contig17.29.1|Name=mRNA_P-littoralis_Contig17.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2030bp|location=Sequence derived from alignment at P-littoralis_Contig17:121453..123482+ (Pylaiella littoralis U1_48)
ACCGCGCAGCGCGACGCGTATGGGCGGCGATGCCACCCAGTGGAGCACAA AGTGAGCTTGACGAGGTTGATCACTCGTGGGTTGTGGCTTGTGTACAGCA GTAGTTTTACTGCACTAGCAGACTCGGGGTGCGGTGAATTGAAGGAGGCG ATATTCCAAAACGGATGATACCAAAAAAGTAGCTGATCCTGCTGTAGTAT GTTTGTGTGTGTGAGAGAGAGAGAGCGAGAGAGAGAGGGAGCTGCTCTCT CTCTTATACTGCTGTTGATGAACCCGCACCTGCTCTCTCTCTCTACTGCT GTTGATGAACCTGTGCAGCAGCAACAACTCTTCTTTTCACTATACAGCAG TACCCGGTACTCCATACAGCAGTATTAGCTACATCTGTCTGGATCGCATT CTAGTGCTGTGCAGCAGTACTGTAATATATTTTTCGTTTGTGTCACATGA TGTGATATGATACAGCAGTCGCCTCTGTCGGCTATATCATACCTTGTTCT CCGTAGTACATGCTGTATCTGTCTAGATCGGATGTAGAGCTGTAGGCTAC AGCAGTAGCTTTTGTATCACATGATATGATACAAAAGTCGCCTTTGTCGG CTACGTCATACCTGGTACTCGGTACAGCAATACAGGGGACATACTCGTAT TTTTGGATCCCTTTTTTGTTTGTATCATATGATATGATACAGCAGCCGCC TCTGTCGGCTATATCATACCTGGTACCTGGAAATCCGTGCAGCAGTACAT CTACATCTGTCTGGATCGCATTCTAGTGCTGTACAGCAGTAGCTCTTTCA GCCGCAGAAATATAAGAAGTATATACCGCAACAGGACAGTGTCTGGATCA CACTACTTATGGAATATTTGTATCACAGCGGTGGCCCTGTCCGTTGTGTC ATGCAACAGCAGGTGTTCTGTCTGGAACGCCTACTCCTTTGCCTGTTTTG TGCTACGCACGCGCGCCAGGGTAACAACGTTGCTAATTCGTCTGCACCCT GCCCCCCCCCCCCCCCCAATGAACACATGTTGCGAATGGTGCTGCCGTAG GTGCTGGCGTGTCTGACTATACTGGGCAGGGGGGATGTATTCGGAAGCAT CTACAACCTTCCGTGGATGAGCACCCCGACAGTGCAGAAGGTGTTCCACC AGTTCTGCGAGCACTTCGCAACCGAGATGTACGACGAGCACATCTTCCTT CCCAGCGAGGAGAACGGCGAGCTGGATCGCGTCATGGGACAGTACGAGAA GCTGGGGTTCCCGGGCGCAATGGGTTCAACGGACGTCACCCATATCGGGT GGAGTAGGTGCCCGTACAACCAAGGATGTTCTTACACCGGTAAGGAAGGC AAGCCTACGGTCGGATACCAGGTGACGGTCAACCACGCTGGGCGTGTGCT GGCCGTGACAGAGGGGTTCACTGGGTCCACCAACGACAAGACCATCATCT GCTGTGATGAAGCGGTAGACAGAATTCGGACCGACAAGCAGTACGCCGAA AAACCATTCACAGTCCGCAAAAAGGATGGTACCACGGAAACCCTGAAGTG GTGCTACCTCATCGTCGACAATGGTTACCACAAGGTGAAAAAATGTAAAG TACCACACGAAATGTCGGGGGGGGTTTTCACGAGCACGCCTTGTTTGTCG GCCAACCTACACTATCATCCCGGTTGGTCGAGCTCCATGCCGTGGGTTTG ACGTGCGACAATGAACGCGGTATGACACACAGAAAGTTAATATTTCCCCT TCTCTCCTTTGGTTTGTTTCGGTCCTTTGATGCAGTGGCGGATGCTCATT GAACCCTCGAAGTACCCGTTGAGCGAGGCCGACTTGCTGTTCTCGAAGAG GCTGGAGAGCGTGCGCAAGGATGTGGAGTGTTTTTCGGCGTCCTGAAGAT GCGCTTCAGAATCCTGAAGCTCGCCATGACCTACCAGAAGCAGGAGCGCC TCGACTACGTCTTCTTCACATGCTGTATCCTGCACAACATGCTCCATACG CATGACGGCATGGGCGGCCTGGAGGAGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:121453..123482+

>mRNA_P-littoralis_Contig17.29.1 ID=mRNA_P-littoralis_Contig17.29.1|Name=mRNA_P-littoralis_Contig17.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=579bp|location=Sequence derived from alignment at P-littoralis_Contig17:121453..123482+ (Pylaiella littoralis U1_48)
ATGAGCACCCCGACAGTGCAGAAGGTGTTCCACCAGTTCTGCGAGCACTT
CGCAACCGAGATGTACGACGAGCACATCTTCCTTCCCAGCGAGGAGAACG
GCGAGCTGGATCGCGTCATGGGACAGTACGAGAAGCTGGGGTTCCCGGGC
GCAATGGGTTCAACGGACGTCACCCATATCGGGTGGAGTAGGTGCCCGTA
CAACCAAGGATGTTCTTACACCGGTAAGGAAGGCAAGCCTACGGTCGGAT
ACCAGGTGACGGTCAACCACGCTGGGCGTGTGCTGGCCGTGACAGAGGGG
TTCACTGGGTCCACCAACGACAAGACCATCATCTGCTGTGATGAAGCGGT
AGACAGAATTCGGACCGACAAGCAGTACGCCGAAAAACCATTCACAGTCC
GCAAAAAGGATGGTACCACGGAAACCCTGAAGTGGTGCTACCTCATCGTC
GACAATGGTTACCACAAGTGGCGGATGCTCATTGAACCCTCGAAGTACCC
GTTGAGCGAGGCCGACTTGCTGTTCTCGAAGAGGCTGGAGAGCGTGCGCA
AGGATGTGGAGTGTTTTTCGGCGTCCTGA
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