mRNA_P-littoralis_Contig17.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.27.1
Unique NamemRNA_P-littoralis_Contig17.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:118628..118829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789812.819747-UTR-P-littoralis_Contig17:118627..1186341680789812.819747-UTR-P-littoralis_Contig17:118627..118634Pylaiella littoralis U1_48UTRP-littoralis_Contig17 118628..118634 +
1680789812.873861-UTR-P-littoralis_Contig17:118818..1188291680789812.873861-UTR-P-littoralis_Contig17:118818..118829Pylaiella littoralis U1_48UTRP-littoralis_Contig17 118819..118829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789812.8308382-CDS-P-littoralis_Contig17:118634..1187131680789812.8308382-CDS-P-littoralis_Contig17:118634..118713Pylaiella littoralis U1_48CDSP-littoralis_Contig17 118635..118713 +
1680789812.859875-CDS-P-littoralis_Contig17:118747..1188181680789812.859875-CDS-P-littoralis_Contig17:118747..118818Pylaiella littoralis U1_48CDSP-littoralis_Contig17 118748..118818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.27.1prot_P-littoralis_Contig17.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 118635..118818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.27.1

>prot_P-littoralis_Contig17.27.1 ID=prot_P-littoralis_Contig17.27.1|Name=mRNA_P-littoralis_Contig17.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=50bp
MRGCWDDVIGFVERCGRNAYTYVLRESTLSNYWYRNHNVPTHRYVGEGT*
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mRNA from alignment at P-littoralis_Contig17:118628..118829+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.27.1 ID=mRNA_P-littoralis_Contig17.27.1|Name=mRNA_P-littoralis_Contig17.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=202bp|location=Sequence derived from alignment at P-littoralis_Contig17:118628..118829+ (Pylaiella littoralis U1_48)
TATTTTCATGAGAGGTTGTTGGGATGACGTCATTGGTTTTGTAGAGAGAT
GCGGCAGAAATGCCTATACGTACGTCCTTAGGGAATGCGAGTGCCGTTCA
AAATCCTCCCGGGGAACGAGCCACTCTCTCCAACTACTGGTATCGTAATC
ACAATGTACCCACACATAGATATGTAGGGGAAGGGACTTAGCGTCGTTGT
GT
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:118628..118829+

>mRNA_P-littoralis_Contig17.27.1 ID=mRNA_P-littoralis_Contig17.27.1|Name=mRNA_P-littoralis_Contig17.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=150bp|location=Sequence derived from alignment at P-littoralis_Contig17:118628..118829+ (Pylaiella littoralis U1_48)
ATGAGAGGTTGTTGGGATGACGTCATTGGTTTTGTAGAGAGATGCGGCAG
AAATGCCTATACGTACGTCCTTAGGGAATCCACTCTCTCCAACTACTGGT
ATCGTAATCACAATGTACCCACACATAGATATGTAGGGGAAGGGACTTAG
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