mRNA_P-littoralis_Contig17.224.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.224.1
Unique NamemRNA_P-littoralis_Contig17.224.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:953719..954403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size685
Hectar predicted targeting categorysignal peptide
Exons1
Cds size423
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789813.5579555-UTR-P-littoralis_Contig17:953718..9537261680789813.5579555-UTR-P-littoralis_Contig17:953718..953726Pylaiella littoralis U1_48UTRP-littoralis_Contig17 953719..953726 +
1680789813.583587-UTR-P-littoralis_Contig17:954149..9544031680789813.583587-UTR-P-littoralis_Contig17:954149..954403Pylaiella littoralis U1_48UTRP-littoralis_Contig17 954150..954403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789813.5707378-CDS-P-littoralis_Contig17:953726..9541491680789813.5707378-CDS-P-littoralis_Contig17:953726..954149Pylaiella littoralis U1_48CDSP-littoralis_Contig17 953727..954149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.224.1prot_P-littoralis_Contig17.224.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 953727..954149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.224.1

>prot_P-littoralis_Contig17.224.1 ID=prot_P-littoralis_Contig17.224.1|Name=mRNA_P-littoralis_Contig17.224.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
MLYLAIFALNVLVALSAFLRSVPEQRVGVSWPIRMHTSKYTIMTGFCIFS
TYLCIVGSQRKQNGRTVASSQVKSGKRSYQTKKSKRERLSVAAETVSVCV
CALHCSFSSTACMATEGKTSEKLVVHFRVFCDDENVPVLT*
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mRNA from alignment at P-littoralis_Contig17:953719..954403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.224.1 ID=mRNA_P-littoralis_Contig17.224.1|Name=mRNA_P-littoralis_Contig17.224.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=685bp|location=Sequence derived from alignment at P-littoralis_Contig17:953719..954403+ (Pylaiella littoralis U1_48)
GGGGTACCATGTTGTATTTGGCTATTTTTGCACTTAATGTGCTAGTAGCA
TTGTCCGCCTTCTTGCGTAGCGTGCCTGAGCAGCGGGTGGGTGTAAGCTG
GCCTATTCGGATGCATACTTCGAAGTATACAATAATGACAGGCTTTTGTA
TATTTTCAACTTATCTGTGTATCGTAGGGTCACAGCGGAAGCAAAATGGC
AGGACAGTTGCTAGCAGTCAAGTAAAATCAGGTAAGCGCAGTTACCAAAC
CAAGAAGTCAAAACGTGAGCGGCTGAGTGTTGCCGCTGAAACGGTTAGTG
TTTGTGTGTGTGCATTGCACTGCTCTTTCTCGTCCACTGCGTGTATGGCG
ACGGAGGGGAAGACAAGCGAGAAACTCGTCGTACACTTCCGTGTTTTCTG
CGATGATGAAAACGTTCCAGTTTTGACATAAATCAAGAGTCGTGACGTCG
GCGGTTCGTAATTACAGTACTACGGTATGGTTTAAAGCATGCACTCCGAA
GCATGGGCTCACCCATCATGCCTTCGGTGTATTCACTGATGAGAAGACCA
TACGGTTGATCAGTGTCATCATTGTTATGTGTGCGTATTTGTGTGGGTTG
TGTGCGTCGCATTTTGTCTTTTTGTTAAAACCGTTCCGATCTCTGTTTGG
GTACCTTTTTAATATCCGTTCTGCCTACTCATCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:953719..954403+

>mRNA_P-littoralis_Contig17.224.1 ID=mRNA_P-littoralis_Contig17.224.1|Name=mRNA_P-littoralis_Contig17.224.1|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig17:953719..954403+ (Pylaiella littoralis U1_48)
ATGTTGTATTTGGCTATTTTTGCACTTAATGTGCTAGTAGCATTGTCCGC
CTTCTTGCGTAGCGTGCCTGAGCAGCGGGTGGGTGTAAGCTGGCCTATTC
GGATGCATACTTCGAAGTATACAATAATGACAGGCTTTTGTATATTTTCA
ACTTATCTGTGTATCGTAGGGTCACAGCGGAAGCAAAATGGCAGGACAGT
TGCTAGCAGTCAAGTAAAATCAGGTAAGCGCAGTTACCAAACCAAGAAGT
CAAAACGTGAGCGGCTGAGTGTTGCCGCTGAAACGGTTAGTGTTTGTGTG
TGTGCATTGCACTGCTCTTTCTCGTCCACTGCGTGTATGGCGACGGAGGG
GAAGACAAGCGAGAAACTCGTCGTACACTTCCGTGTTTTCTGCGATGATG
AAAACGTTCCAGTTTTGACATAA
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