mRNA_P-littoralis_Contig17.198.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.198.1
Unique NamemRNA_P-littoralis_Contig17.198.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig17.198.1 vs. uniprot
Match: A0A6H5J5B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5B3_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.220e-20
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:  952 SVESGSGHPALADSCGGIVLRLSPAERSLEPWSTTLAPLRAMCDIDPSLSRAGIDYRSVMHAVEGAQEMKSLHTVK 1179
            SV+S   +P + D+ G + LRL+PAERSLEPW T LAP+RAMCDIDPSLSRAGI YR+V+HAVEGAQ+MK+ H  K
Sbjct:  196 SVQSSVVYPRIPDAHGWVSLRLNPAERSLEPWGTALAPMRAMCDIDPSLSRAGIVYRNVIHAVEGAQKMKTCHKAK 271
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BLAST of mRNA_P-littoralis_Contig17.198.1 vs. uniprot
Match: D8LE39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE39_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.890e-6
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 1 
Query: 1120 RSVMHAVEGAQEMKSLHTVKQKKAREAKSLLGQDVRPRTSEPR 1248
            R V+HAVEGAQ+MK+ H  K +K R+A+SLLGQDVRPRTSEPR
Sbjct:    8 RDVIHAVEGAQKMKTCHKAKIRKERDARSLLGQDVRPRTSEPR 50
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J5B3_9PHAE2.220e-2067.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE39_ECTSI1.890e-672.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:824698..826585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1252
Hectar predicted targeting categoryother localisation
Exons2
Cds size1251
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789821.7044415-CDS-P-littoralis_Contig17:824697..8258761680789821.7044415-CDS-P-littoralis_Contig17:824697..825876Pylaiella littoralis U1_48CDSP-littoralis_Contig17 824698..825876 +
1680789821.7167659-CDS-P-littoralis_Contig17:826512..8265841680789821.7167659-CDS-P-littoralis_Contig17:826512..826584Pylaiella littoralis U1_48CDSP-littoralis_Contig17 826513..826584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.198.1prot_P-littoralis_Contig17.198.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 824698..826584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.198.1

>prot_P-littoralis_Contig17.198.1 ID=prot_P-littoralis_Contig17.198.1|Name=mRNA_P-littoralis_Contig17.198.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=417bp
GYTFRFGPGRQSRRLQQIERLRELRVRHSAAGLAHDLAHGAPLSRGSTRG
GKQFSKERKGDDTAYTSSRDRKRRRESSGEANQIERQRLSPKNSLAATTH
FTPYQQQQHEAPPPGLTIKVAHNVVEDPTRGRHDHAKGARGGWSRDDPGL
NSNLTKISHSLGPAKYDGIRTRLDVSTAPKDPLGSLDEGDEGRRAYMGSA
FFPGSDSPLSKPASAPIILPIRSGPALWRPRAGSSQRPIPSSENRCQQQQ
HSCKHNEHNSVAGVTAAAAAAAAAAALGGKDSHGRASSKAGSNAGAMDGG
SSAGNEGNVGTELPVGFSVESGSGHPALADSCGGIVLRLSPAERSLEPWS
TTLAPLRAMCDIDPSLSRAGIDYRSVMHAVEGAQEMKSLHTVKQKKAREA
KSLLGQDVRPRTSEPRL
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mRNA from alignment at P-littoralis_Contig17:824698..826585+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.198.1 ID=mRNA_P-littoralis_Contig17.198.1|Name=mRNA_P-littoralis_Contig17.198.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1888bp|location=Sequence derived from alignment at P-littoralis_Contig17:824698..826585+ (Pylaiella littoralis U1_48)
GGTTACACGTTCAGATTTGGACCGGGGAGGCAATCGCGAAGACTTCAACA
AATCGAACGCCTGCGAGAGCTGCGGGTCCGTCACTCTGCCGCCGGTCTCG
CACACGATTTAGCACATGGTGCCCCGCTGTCGAGGGGGTCGACGAGAGGC
GGGAAGCAATTTTCTAAAGAGCGGAAGGGTGATGATACGGCTTATACTTC
GAGCCGTGACAGAAAGCGGCGTCGAGAGTCTTCAGGAGAGGCGAACCAGA
TTGAAAGACAGAGATTATCGCCAAAAAATTCTTTGGCAGCAACAACACAC
TTCACTCCGTACCAGCAGCAGCAGCATGAAGCACCGCCTCCTGGGCTCAC
AATAAAAGTTGCTCACAATGTTGTTGAAGATCCCACTAGAGGCAGACATG
ACCATGCTAAGGGTGCTCGTGGCGGTTGGAGCCGAGACGACCCAGGACTG
AACAGCAACTTGACAAAAATCAGTCATTCACTCGGGCCGGCCAAATATGA
TGGAATTCGTACACGTCTCGATGTCTCCACGGCCCCAAAAGACCCGCTAG
GTTCGCTAGATGAAGGAGATGAAGGCCGAAGAGCCTATATGGGTTCCGCG
TTTTTCCCTGGAAGTGATAGCCCACTTTCGAAGCCCGCCTCGGCTCCAAT
AATACTTCCCATTCGGTCGGGGCCGGCATTGTGGAGACCACGTGCAGGAA
GCAGCCAGCGCCCCATTCCTTCGAGTGAAAACAGATGTCAGCAGCAGCAA
CATTCCTGTAAACACAACGAACACAACTCTGTGGCGGGAGTGACAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCATTAGGAGGCAAAGATTCTCACG
GCCGGGCATCTTCTAAGGCCGGGAGCAACGCAGGCGCAATGGACGGAGGT
TCAAGTGCTGGAAACGAGGGCAATGTAGGCACCGAGCTGCCTGTTGGTTT
CTCGGTGGAATCGGGATCGGGCCACCCGGCTCTCGCCGACTCATGTGGTG
GGATAGTCCTCAGGCTCAGCCCAGCCGAACGGTCGTTGGAACCATGGAGC
ACGACGCTCGCTCCGCTTCGTGCCATGTGTGACATTGACCCTTCGCTTTC
TCGCGCGGGGATAGACTACAGGAGCGTGATGCACGCCGTTGAAGGGGCGC
AGGAGATGAAATCTCTCCACACGGTCAAGGTGCGAACAGGGTGGGGTTCA
CGTAGGTGGGAGGTAATGGTCTGGAAACGAGCGGTCCATCAGCAGGTATT
GAAAGATCTCGTGCATCAGCACGCGGAATTTTTCTGTTCGACCCCGACTG
AACAACCTCTGCCCGATGTCAGAGGATCTTAAGAATAGAGACAAAAATCG
AGACACCCACGAATCACAAGTGGGAGAATGAAAACAAAGCGGTAGGATCA
CACAGGAAGATCCGAACACTGTCTGACGTGACCCCACTAGCCAGCCTTAC
TCCTCTGTCGACATTTGCTGTACCTGCCTCAAGGTTGTGTTGGGGAAAAC
CAGTGATTTTGATTCTGTGCAAAGTCGGCGGGAGTTGCCTGACTGTGAGT
CGTGACACGGCTCGTGCCTGATTGCACATCTGTTGATTCCAAATACACAT
GACCCTCGCACTTAGGCCATAACGGAACACTTTTAACTCGAGCTACTTCT
TTGCTGGGGGGAACGTTTCATCCAAGCGGCACCACTATTGAGTTGAAAAT
GACCACGACAGAACCTTCCCATCCTCGTGAGTGGCGCGATGGTTGAGCGC
ACCCGCAACCCGAAGTCCTCCCGTTTTCTCCAACCCATACCATGCATGTT
TGTATGGCAATACAGCAAAAAAAAGCTCGCGAGGCGAAGTCACTGCTGGG
CCAAGATGTAAGACCTCGCACAAGTGAACCTCGCCTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:824698..826585+

>mRNA_P-littoralis_Contig17.198.1 ID=mRNA_P-littoralis_Contig17.198.1|Name=mRNA_P-littoralis_Contig17.198.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1251bp|location=Sequence derived from alignment at P-littoralis_Contig17:824698..826585+ (Pylaiella littoralis U1_48)
GGTTACACGTTCAGATTTGGACCGGGGAGGCAATCGCGAAGACTTCAACA
AATCGAACGCCTGCGAGAGCTGCGGGTCCGTCACTCTGCCGCCGGTCTCG
CACACGATTTAGCACATGGTGCCCCGCTGTCGAGGGGGTCGACGAGAGGC
GGGAAGCAATTTTCTAAAGAGCGGAAGGGTGATGATACGGCTTATACTTC
GAGCCGTGACAGAAAGCGGCGTCGAGAGTCTTCAGGAGAGGCGAACCAGA
TTGAAAGACAGAGATTATCGCCAAAAAATTCTTTGGCAGCAACAACACAC
TTCACTCCGTACCAGCAGCAGCAGCATGAAGCACCGCCTCCTGGGCTCAC
AATAAAAGTTGCTCACAATGTTGTTGAAGATCCCACTAGAGGCAGACATG
ACCATGCTAAGGGTGCTCGTGGCGGTTGGAGCCGAGACGACCCAGGACTG
AACAGCAACTTGACAAAAATCAGTCATTCACTCGGGCCGGCCAAATATGA
TGGAATTCGTACACGTCTCGATGTCTCCACGGCCCCAAAAGACCCGCTAG
GTTCGCTAGATGAAGGAGATGAAGGCCGAAGAGCCTATATGGGTTCCGCG
TTTTTCCCTGGAAGTGATAGCCCACTTTCGAAGCCCGCCTCGGCTCCAAT
AATACTTCCCATTCGGTCGGGGCCGGCATTGTGGAGACCACGTGCAGGAA
GCAGCCAGCGCCCCATTCCTTCGAGTGAAAACAGATGTCAGCAGCAGCAA
CATTCCTGTAAACACAACGAACACAACTCTGTGGCGGGAGTGACAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCATTAGGAGGCAAAGATTCTCACG
GCCGGGCATCTTCTAAGGCCGGGAGCAACGCAGGCGCAATGGACGGAGGT
TCAAGTGCTGGAAACGAGGGCAATGTAGGCACCGAGCTGCCTGTTGGTTT
CTCGGTGGAATCGGGATCGGGCCACCCGGCTCTCGCCGACTCATGTGGTG
GGATAGTCCTCAGGCTCAGCCCAGCCGAACGGTCGTTGGAACCATGGAGC
ACGACGCTCGCTCCGCTTCGTGCCATGTGTGACATTGACCCTTCGCTTTC
TCGCGCGGGGATAGACTACAGGAGCGTGATGCACGCCGTTGAAGGGGCGC
AGGAGATGAAATCTCTCCACACGGTCAAGCAAAAAAAAGCTCGCGAGGCG
AAGTCACTGCTGGGCCAAGATGTAAGACCTCGCACAAGTGAACCTCGCCT
G
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