mRNA_P-littoralis_Contig17.197.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.197.1
Unique NamemRNA_P-littoralis_Contig17.197.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig17.197.1 vs. uniprot
Match: D8LE38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE38_ECTSI)

HSP 1 Score: 335 bits (858), Expect = 1.210e-108
Identity = 160/184 (86.96%), Postives = 176/184 (95.65%), Query Frame = 2
Query:  638 LRPGRKGLGVRDEVAAAPSAFPDQYLRGEVPCSKHCSAASALVWVCPLEQLDYDHYLPMFFDGIRCLEEPCTTLARQGVSDLLSAARGSPERILPSLPNIMRAIRLAISCKNPGVIIFACSALRQLATGNKEVGEALVPYYKMFLNLFNIFMNSTRSTGDRIDYGQRNNQDIGKAISDTVETLE 1189
            +RP RKGL VRDEVAA PSAFPD+YLRGEVPCSKHCSAASALVWVCPLEQLDY++YLPMFFDGIRCLEEPC TLARQGVSDLLSAARG P+RILPSLPNIMRA+R+AISCKNPGVIIFACSALRQLATGNKEVGEALV YYKMFL++FN+FMN T+STGD+IDYGQRN+QD+G+A+S TVETLE
Sbjct:    1 MRPARKGLSVRDEVAAVPSAFPDRYLRGEVPCSKHCSAASALVWVCPLEQLDYEYYLPMFFDGIRCLEEPCMTLARQGVSDLLSAARGYPQRILPSLPNIMRALRVAISCKNPGVIIFACSALRQLATGNKEVGEALVGYYKMFLHVFNLFMNCTKSTGDKIDYGQRNSQDVGEAVSCTVETLE 184          
BLAST of mRNA_P-littoralis_Contig17.197.1 vs. uniprot
Match: A0A6S9H4I7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H4I7_HETAK)

HSP 1 Score: 206 bits (523), Expect = 2.990e-57
Identity = 127/349 (36.39%), Postives = 191/349 (54.73%), Query Frame = 2
Query:  155 IGQSSRGTAGVYELQLRRKLLQQQLGVVDDRCQRVAKVVAKKHLARLSRPEQPGQRPVPGRDVAHRRQKIITNPGGLPSICVAGVGGGEKIRKQQNIGLTGGRPAATDKAANQERDASQHKQNLLAAAPFKRGGCIDHTRKKQMLQDKQREIEQQAALEKKLR---PGRKGLGVRDEVAAAPSAFPDQYLRGEVPCS-KHCSAASALVWVCPLEQLDYDHYLPMFFDGIRCLEEPCTTLARQGVSDLLSAARGSPERILPSLPNIMRAIRLAISCKNPGVIIFACSALRQLATGNKEVGEALVPYYKMFLNLFNIFMNSTRSTGDRIDYGQRNNQDIGKAISDTVETLE 1189
            +  S RG AG+ EL++++KLL+QQ+ V+D R  ++  V+ KK   ++       QR + G D +  + K        P        G   +R+       GG  +  D                + A  FK G   D  RK+ +L   +  +E+++  +++ R   P + G   R EV    + FP +Y RGE+PCS +H +A  AL WVCPL+ LDYDHYLP+FFDGIR  E+P   LARQGV +LL AARG PER+LP LP ++  +R A+  ++P V++ A   + +L   N  VGEALVPYY+  L++ N+F+    + GD +DYGQR  +D+   + + +E LE
Sbjct:    1 MASSGRGGAGIMELRMKKKLLEQQIAVLDSRAGKITNVLEKKRAQKMR-----DQRAL-GSDNSSNQSK--------PPPSQLSRAGSSSMRQ------LGGSSSLPDLG--------------IQARTFKSGSTADRVRKQHLLNQYKTNMERESRKKEEARRRVPPKAGAFRRKEVPK--TLFPVRYNRGELPCSVEHTAAGYALTWVCPLQTLDYDHYLPIFFDGIRATEQPYKFLARQGVRELLEAARGYPERVLPCLPEVVAGLRRALDTRDPPVLLAALGCVEELVGCNAGVGEALVPYYRQLLSVMNLFLAKRENLGDAMDYGQRRGEDLAARVGEVLEALE 313          
BLAST of mRNA_P-littoralis_Contig17.197.1 vs. uniprot
Match: A0A7S2Y192_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y192_9STRA)

HSP 1 Score: 194 bits (492), Expect = 4.180e-52
Identity = 135/384 (35.16%), Postives = 206/384 (53.65%), Query Frame = 2
Query:  125 PATRAPEVACIGQSSRGTAGVYELQLRRKLLQQQLGVVDDRCQRVAKVVAKKHLARLSRPEQPGQRPVPGRDVAHRRQKIITNPGGLPSICVA-GVGG---GEKIRKQQNIGLTGGRPAAT------DKAANQERDASQHKQ---------------NLLAAAPFKRGGCIDHTRKKQMLQDKQREIEQQAALEKKLRPGR---KGLGVRDEVAAAPSAFPDQYLRGEVPCS-KHCSAASALVWVCPLEQLDYDHYLPMFFDGIRCLEEPCTTLARQGVSDLLSAARGSPERILPSLPNIMRAIRLAISCKNPGVIIFACSALRQLATGNKEVGEALVPYYKMFLNLFNIFMNSTRSTGDRIDYGQRNNQDIGKAISDTVETLE 1189
            P++ AP +    ++ RG  G+ EL+L++KL++QQL V++    +V+ V+ KK   +L       +R V G   +      +     + +  +  GVGG   G   R     G  GG    +          +Q RD  QH +               + +A    K G   D  RKK +L+   + ++++   E++ RPG    K    R         FP +Y RGE+PCS +H S+  AL+W+CPL+ LDY+HYLPMFF+GIRC E+P   +A QGV +LL A++G PERILP+LP +++ +R+A+  K P +II A   ++ L   N  +GEA+VPYY+  L++FN+F    R+ GD +DYGQR   DI   I +T+E LE
Sbjct:    3 PSSSAPNIPTT-RTGRGN-GIMELRLQKKLMEQQLAVLNMNEAKVSNVLEKKRAKKLRE-----KRGVAGGGNSWGNADGLAGQRSVSATQLELGVGGNSFGGTGRXXXXXGPMGGMRDVSPIDGRHQMGGSQTRD--QHNEVHGHHPXXXXXQVDHHRIAPRTIKPGSDADRVRKKFLLRQAGQTLKRE---ERERRPGPRPPKAGAYRRANEQGEILFPIRYKRGELPCSIEHKSSGYALLWICPLQTLDYEHYLPMFFEGIRCTEDPYKYMASQGVMELLDASKGYPERILPTLPEVVKYLRMALMSKLPDIIITALRCIQSLVLCNVGIGEAMVPYYRQLLSVFNLFRGKRRNLGDGMDYGQRKGDDINSVIDETLEVLE 374          
BLAST of mRNA_P-littoralis_Contig17.197.1 vs. uniprot
Match: A0A7S2FEA0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FEA0_9STRA)

HSP 1 Score: 172 bits (437), Expect = 7.030e-46
Identity = 87/217 (40.09%), Postives = 133/217 (61.29%), Query Frame = 2
Query:  542 FKRGGCIDHTRKKQMLQDKQREIEQQAALEKKLRPGRKGLGVRDEVAAAPSAFPDQYLRGEVPCS-KHCSAASALVWVCPLEQLDYDHYLPMFFDGIRCLEEPCTTLARQGVSDLLSAARGSPERILPSLPNIMRAIRLAISCKNPGVIIFACSALRQLATGNKEVGEALVPYYKMFLNLFNIFMNSTRSTGDRIDYGQRNNQDIGKAISDTVETLE 1189
            F     +   RK+ +L+  + ++  Q  +   L P +   G   +     + FP +Y RGE+PC+ +H S+A+ L WVCPL  LDY+HYLP+F DGIRC E P   LARQG  +LL  A+G P+R++P +P +++ +RLA++  +P +I+ A + L++L   N  VGEALVPYY+  L++ N+F+    + GD IDY Q    D+  AI +T+E LE
Sbjct:   22 FPESSRVSIIRKRNILRQAEMDLSSQREV---LPPPKPKAGAYRKKDVPTTLFPIRYKRGELPCAIEHRSSANGLSWVCPLHNLDYEHYLPIFVDGIRCTENPYCFLARQGCHELLEGAQGYPDRVIPCIPELIKPLRLALTTNHPDIILAALTFLKELVLCNYGVGEALVPYYRQLLSVLNLFLTKRTNIGDAIDYSQFKGNDMSTAIMETLEVLE 235          
BLAST of mRNA_P-littoralis_Contig17.197.1 vs. uniprot
Match: F0Y431_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y431_AURAN)

HSP 1 Score: 171 bits (433), Expect = 1.150e-45
Identity = 80/177 (45.20%), Postives = 119/177 (67.23%), Query Frame = 2
Query:  662 GVRDEVAAAPSAFPDQYLRGEVPCS-KHCSAASALVWVCPLEQLDYDHYLPMFFDGIRCLEEPCTTLARQGVSDLLSAARGSPERILPSLPNIMRAIRLAISCKNPGVIIFACSALRQLATGNKEVGEALVPYYKMFLNLFNIFMNSTRSTGDRIDYGQRNNQDIGKAISDTVETLE 1189
            GV  +     + FP +Y RGE+PCS +H  + + L W+CPL QLDY+HYLP+F DGIRC E P   +ARQG  +L+  A+G P+ +LP LP++++ IRLA++ K+P ++  A  AL+++   N  VGEALVP+Y+  L++ N+F    ++ GD I YGQR   D+G A+ +T+E LE
Sbjct:   30 GVFRKTKVEATMFPIRYRRGELPCSIEHRGSGNNLSWICPLLQLDYEHYLPIFLDGIRCTESPYQFVARQGFDELIEEAKGFPDCVLPCLPDLIKPIRLALNTKDPDIVHAALRALQKIVLSNYGVGEALVPFYRQLLSVMNLFFTKRQNLGDAIFYGQRKGTDLGTAVLETLELLE 206          
BLAST of mRNA_P-littoralis_Contig17.197.1 vs. uniprot
Match: A0A835YJW5_9STRA (Parkin co-regulated protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJW5_9STRA)

HSP 1 Score: 171 bits (432), Expect = 3.460e-44
Identity = 125/353 (35.41%), Postives = 178/353 (50.42%), Query Frame = 2
Query:  179 AGVYELQLRRKLLQQQLGVVDDRCQRVAKVVAKKHLARLSRPEQPGQRPVPGRDVAHRRQKIITNPGGLPSICVAGVGGGEKIRKQQNI--GLTGGRPAATDKAANQERDASQHKQNLLAAA------PFKRGGCIDHTRKKQMLQDKQREIE-----QQAALEKKLRPGRKGLGVRDEVAAAPSAFPDQYLRGEVPCSKHCSAASALVWVCPLEQLDYDHYLPMFFDGIRCLEEPCTTLARQGVSDLLSAARGSPERILPSLPNIMRAIRLAISCKNPGVIIFACSALRQLATGNKEVGEALVPYYKMFLNLFNIFMNST---RSTGDRIDYGQRNNQDIGKAISDTVETLE 1189
            AG+ ELQLR+KLLQQQL +V ++C R+  V+ KK           G+    G D   R    +++P   P+            R+ +N   GL                 AS H  +  AAA       F  G  ID++RK+++++  + E E     ++AA   K               A PS FP +Y  G++PCS   S    LVWVCPL+QLDY +YLP+F DGIRC  +PC  LARQG+ DLLSAA G+PER++P L +I  A+R A    +  ++ + C  L  L     EVG ALVP+YK FL+L N  +N      + G  I + ++   D+   I +T++ LE
Sbjct:   11 AGICELQLRKKLLQQQLELVSNKCNRMTAVLEKK-----------GEAQARGHD---RGADPLSHPKNTPA------------RRPRNTFYGL---------------EHASTHDAHHTAAARIGGAQTFPPGSVIDNSRKRELIRKARHEWEHDKAAREAAAAAKAPVQXXXXXXXXXXXATPSRFPGRYAMGDIPCSID-SGDGVLVWVCPLQQLDYHYYLPLFLDGIRCTADPCKMLARQGLLDLLSAATGTPERVVPLLKDIAMALRNACLTDSQELVAYTCKVLETLVGIGPEVGLALVPHYKAFLSLLNKHINDAPLKNAQGKEIGHNRK--LDLSVLIEETLQMLE 319          
BLAST of mRNA_P-littoralis_Contig17.197.1 vs. uniprot
Match: A0A7S1TRG1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRG1_9STRA)

HSP 1 Score: 159 bits (402), Expect = 5.460e-40
Identity = 121/350 (34.57%), Postives = 187/350 (53.43%), Query Frame = 2
Query:  176 TAGVYELQLRRKLLQQQLGVVDDRCQRVAKVVAKKHLARLSRPEQPGQRPVPGR----DVAHRRQKIITNPGGLPSICVAGVGGGEKIRKQQNIGLTGGRPAATDKAANQERDASQHKQNLLAAAPFKRGGCIDHTRKKQMLQDKQREIEQQAALEKKLRPGRKG-LGVRDEVAAAPSAFPDQYLRGEVPCS-KHCSAASALVWVCPLEQLDYDHYLPMFFDGIRCLEEPCTTLARQGVSDLLSAARGSPERILPSLPNIMRAIRLAISCKNPGVIIFACSALRQLATGNKEVGEALVPYYKMFLNLFNIFMNSTRSTGDRIDYGQRNNQDIGKAISD----TVETLEPL 1195
            +AG+Y+L+L+++LL+QQL V+D R  R+ ++  K+   R S P+  G R  P R    D+  RR +++                    +++Q  G T    A  D    + + +S      +A AP   GG +D  RK+  ++  +  ++ +A   ++ R  RK     R ++      F  +Y RGE+P + +H +    L WVCPL+ LDY++YLP+FF+GIRC  +P   LARQGV +LL A+RG PER+LP L +I+  +R A+   +  V+I     L++L T N  VGEA+VPYY+ FL  F    +   + GD +DY QR      K I+D    T ETL+ L
Sbjct:    2 SAGLYDLKLKKRLLKQQLEVLDVREARINEIKMKRTQQRSS-PQ--GGRGSPARLKPLDLEARRSRLL--------------------QRRQEAGQTA---ALRDFNRMKPQASSSLAVYTMAPAPILPGGNMDRIRKRDAVRRTKLRLQGEAV--RRERANRKPPKPKRVDMKLTEPLFVGRYTRGELPATLEHRTNGYGLSWVCPLQSLDYEYYLPIFFEGIRCQRDPYRFLARQGVLELLDASRGYPERVLPYLESIVVPLRDAVVTHDEDVLIAVLMILQKLVTCNPGVGEAIVPYYRQFLAAFKRHYSHGENLGDGMDYKQR------KGITDICTMTAETLQLL 317          
BLAST of mRNA_P-littoralis_Contig17.197.1 vs. uniprot
Match: A0A482SS01_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SS01_9ARCH)

HSP 1 Score: 157 bits (396), Expect = 2.810e-39
Identity = 79/200 (39.50%), Postives = 125/200 (62.50%), Query Frame = 2
Query:  593 DKQREIEQQAALEKKLRPGRKGLGVRDEVAAAPSAFPDQYLRGEVPCS-KHCSAASALVWVCPLEQLDYDHYLPMFFDGIRCLEEPCTTLARQGVSDLLSAARGSPERILPSLPNIMRAIRLAISCKNPGVIIFACSALRQLATGNKEVGEALVPYYKMFLNLFNIFMNSTRSTGDRIDYGQRNNQDIGKAISDTVETLE 1189
            D+ R + +  A E++++  +     R E+   PS  P++Y RGE+PC+ +H ++   L W CPLE LDY++YLP+FFDG++C +   + +ARQG+ D+L A+RG PERI+P L  + R +R A++  +  +++    +L QL   N EVG  L+ Y + FL     FM+  + TGD+IDYGQR N D+G+ I   +E +E
Sbjct:  105 DEIRNMIKHKAEEERIKEEKNKPRTRPEIKIPPSMLPNRYKRGELPCTIEHGTSGLYLSWACPLENLDYEYYLPLFFDGLQCKDHITSFIARQGIEDMLYASRGHPERIIPVLHLLARPLRNALAKFDEEILLPVLKSLEQLILSNAEVGAELLKYGRQFLVPIAYFMDKNKHTGDKIDYGQRRNDDVGEQIRRVLELME 304          
BLAST of mRNA_P-littoralis_Contig17.197.1 vs. uniprot
Match: A0A7S4ED43_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ED43_9STRA)

HSP 1 Score: 157 bits (397), Expect = 5.300e-39
Identity = 104/346 (30.06%), Postives = 175/346 (50.58%), Query Frame = 2
Query:  158 GQSSRGTAGVYELQLRRKLLQQQLGVVDDRCQRVAKVVAKKHL-ARLSRPEQPGQRPVPGRDVAHRRQKIITNPGGLPSICVAGVGGGEKIRKQQNIGLTGGRPAATDKAANQERDASQHKQNLLAAAPFKRGGCIDHTRKKQMLQDKQREIEQQAALEKKLRPGRKGLGVRDEVAAAPSAFPDQYLRGEVPCS-KHCSAASALVWVCPLEQLDYDHYLPMFFDGIRCLEEPCTTLARQGVSDLLSAARGSPERILPSLPNIMRAIRLAISCKNPGVIIFACSALRQLATGNKEVGEALVPYYKMFLNLFNIFMNSTRSTGDRIDYGQRNNQDIGKAISDTVETLE 1189
            G+ S    GV +L++++ +L +Q+ ++DDRC    K++ KK    R S+        +P   ++ + Q++I  P  LP            +R+             T  +     D   HK    A            T   Q +Q++ R  +   +            GV  +     + FP +Y RGE+PC+ +H +  + L W CPL QLDY+HYLP+F DGIRC +     +ARQG  +++  A+G P+ +LP +P +++ IRLA++  +P +++   +AL+++   N  VGEA+VP+Y+  L   N+F    ++ GD+I YGQR   D+G A+ +T+E LE
Sbjct:   46 GRMSPQKVGV-DLKMQKAMLLKQMALLDDRCAATHKILGKKTRDRRASKLLAQAHAHLPRSSLSKQGQRVIEKPVALPKR--------PPVRR-------------TTPSITPNPDVLIHKLKRTAK-----------TVNAQKIQNRTRPHKGPCS------------GVFRKQKVEETVFPTRYERGELPCAIEHGACHNTLSWACPLLQLDYEHYLPIFLDGIRCTDARYKFVARQGFDEMIEEAKGFPDCVLPVVPALIKPIRLALATHDPDIVVAGLNALQKVVLSNYGVGEAMVPFYRQLLQPMNLFYTKRQNIGDQIFYGQRKGTDLGTAVLETLELLE 346          
BLAST of mRNA_P-littoralis_Contig17.197.1 vs. uniprot
Match: A0A0M9GB55_9TRYP (Putative mitochondrial PACRGB n=2 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0M9GB55_9TRYP)

HSP 1 Score: 147 bits (371), Expect = 6.500e-36
Identity = 75/182 (41.21%), Postives = 112/182 (61.54%), Query Frame = 2
Query:  644 PGRKGLGVRDEVAAAPSAFPDQYLRGEVPCSKHCSAASALVWVCPLEQLDYDHYLPMFFDGIRCLEEPCTTLARQGVSDLLSAARGSPERILPSLPNIMRAIRLAISCKNPGVIIFACSALRQLATGNKEVGEALVPYYKMFLNLFNIFMNSTRSTGDRIDYGQRNNQDIGKAISDTVETLE 1189
            PG  G   +  +   P+ F   Y RG++P S   +A   L+W   + +LDY HYLP+FFDG+R LEEP + +A QG  DLL        +ILP++P I+  ++ A++ ++P V+      +++L      VGEALVPYY+  L +FN+F N T++ GDR+DYGQRN+QD+   I+DT+  LE
Sbjct:  120 PGVAGAYAKQRIP--PTEFRHHYERGDLPLSVQHAAKRTLMWKVDVSKLDYHHYLPIFFDGLRELEEPFSFVAHQGSLDLLE---NGGAKILPTVPQIIMPLKTALNTRHPDVLRKVFHVIQKLVVSGDHVGEALVPYYRQLLPVFNLFKNRTKNMGDRMDYGQRNSQDLSSLINDTLYLLE 296          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE38_ECTSI1.210e-10886.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6S9H4I7_HETAK2.990e-5736.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2Y192_9STRA4.180e-5235.16Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2FEA0_9STRA7.030e-4640.09Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0Y431_AURAN1.150e-4545.20Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A835YJW5_9STRA3.460e-4435.41Parkin co-regulated protein-domain-containing prot... [more]
A0A7S1TRG1_9STRA5.460e-4034.57Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A482SS01_9ARCH2.810e-3939.50Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S4ED43_9STRA5.300e-3930.06Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0M9GB55_9TRYP6.500e-3641.21Putative mitochondrial PACRGB n=2 Tax=Leptomonas p... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:818852..823537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LE38
PFAMsParcG
Model size1903
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue4.83e-112
EggNOG OGsKOG3961@1|root,KOG3961@2759|Eukaryota
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-05_004190.1
Descriptionnegative regulation of cell death
Cds size1317
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.197.1prot_P-littoralis_Contig17.197.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 819317..823416 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789821.5717132-UTR-P-littoralis_Contig17:818851..8193161680789821.5717132-UTR-P-littoralis_Contig17:818851..819316Pylaiella littoralis U1_48UTRP-littoralis_Contig17 818852..819316 -
1680789821.6610734-UTR-P-littoralis_Contig17:823416..8235371680789821.6610734-UTR-P-littoralis_Contig17:823416..823537Pylaiella littoralis U1_48UTRP-littoralis_Contig17 823417..823537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789821.588169-CDS-P-littoralis_Contig17:819316..8195481680789821.588169-CDS-P-littoralis_Contig17:819316..819548Pylaiella littoralis U1_48CDSP-littoralis_Contig17 819317..819548 -
1680789821.6043222-CDS-P-littoralis_Contig17:820160..8201761680789821.6043222-CDS-P-littoralis_Contig17:820160..820176Pylaiella littoralis U1_48CDSP-littoralis_Contig17 820161..820176 -
1680789821.6149645-CDS-P-littoralis_Contig17:820211..8202641680789821.6149645-CDS-P-littoralis_Contig17:820211..820264Pylaiella littoralis U1_48CDSP-littoralis_Contig17 820212..820264 -
1680789821.6235957-CDS-P-littoralis_Contig17:820589..8206931680789821.6235957-CDS-P-littoralis_Contig17:820589..820693Pylaiella littoralis U1_48CDSP-littoralis_Contig17 820590..820693 -
1680789821.6345785-CDS-P-littoralis_Contig17:820950..8211151680789821.6345785-CDS-P-littoralis_Contig17:820950..821115Pylaiella littoralis U1_48CDSP-littoralis_Contig17 820951..821115 -
1680789821.6430712-CDS-P-littoralis_Contig17:821576..8216921680789821.6430712-CDS-P-littoralis_Contig17:821576..821692Pylaiella littoralis U1_48CDSP-littoralis_Contig17 821577..821692 -
1680789821.6518278-CDS-P-littoralis_Contig17:822785..8234161680789821.6518278-CDS-P-littoralis_Contig17:822785..823416Pylaiella littoralis U1_48CDSP-littoralis_Contig17 822786..823416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.197.1

>prot_P-littoralis_Contig17.197.1 ID=prot_P-littoralis_Contig17.197.1|Name=mRNA_P-littoralis_Contig17.197.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=439bp
MPATRAPEVACIGQSSRGTAGVYELQLRRKLLQQQLGVVDDRCQRVAKVV
AKKHLARLSRPEQPGQRPVPGRDVAHRRQKIITNPGGLPSICVAGVGGGE
KIRKQQNIGLTGGRPAATDKAANQERDASQHKQNLLAAAPFKRGGCIDHT
RKKQMLQDKQREIEQQAALEKKLRPGRKGLGVRDEVAAAPSAFPDQYLRG
EVPCSKHCSAASALVWVCPLEQLDYDHYLPMFFDGIRCLEEPCTTLARQG
VSDLLSAARGSPERILPSLPNIMRAIRLAISCKNPGVIIFACSALRQLAT
GNKEVGEALVPYYKMFLNLFNIFMNSTRSTGDRIDYGQRNNQDIGKAISD
TVETLEPLHTHISNVHGVTGDKLDGSAPARPKAGLTSFEGLKKNAVIHHS
CVLRYTDVADRHVIGWLYAFVCCIFEFVHFFFVLNWSL*
back to top

mRNA from alignment at P-littoralis_Contig17:818852..823537-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.197.1 ID=mRNA_P-littoralis_Contig17.197.1|Name=mRNA_P-littoralis_Contig17.197.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4686bp|location=Sequence derived from alignment at P-littoralis_Contig17:818852..823537- (Pylaiella littoralis U1_48)
CGAGGATCTAGCAAGATAAGCAACGAACACAGTGACTAAATACATCTACT TGTGTTTCTATTGCAGTTTGCTTTCTCCTGGCCCACGCCGCGCTGGCACC ATCCAGGCCGAGCTCAGTGTGATGCCGGCAACCCGTGCTCCTGAGGTGGC TTGTATCGGTCAGAGCAGTCGTGGGACTGCCGGAGTTTACGAGCTTCAGC TTCGGCGCAAGCTTTTACAGCAACAATTGGGAGTAGTCGACGATAGGTGC CAACGGGTTGCTAAGGTGGTCGCCAAGAAACATTTGGCGAGGCTTTCCCG TCCAGAACAACCGGGGCAGCGCCCGGTCCCTGGGAGAGATGTCGCCCATC GGCGGCAAAAAATCATCACAAACCCAGGTGGGCTACCATCAATATGCGTG GCGGGTGTAGGTGGTGGAGAAAAAATCCGCAAGCAACAAAATATTGGCCT GACAGGCGGTCGCCCAGCGGCTACCGACAAAGCAGCTAATCAAGAACGAG ATGCTTCGCAGCACAAGCAGAATCTCTTAGCAGCAGCACCATTCAAGAGA GGTGGTTGTATCGACCACACTAGAAAGAAACAGATGTTGCAGGACAAACA GCGAGAGATAGAACAACAGGCTGCTCTGGAGAAGAAATTGCGGCCAGGCA GGAAGGGGTTAGGTGTGAGAGATGAGGTGGCAGCGGCGCCGTCCGCGTTC CCAGACCAATATCTCCGAGGAGAGGTGCCTTGCTCCAAACACTGCTCTGC AGGTAAGATCTCAACCTGTCGGGGTTTTCGGCGCAGTCGACACACTAAGG TTGGAGAAATAACAACAGCCGTGTAATGGAATGAAATACTCAAATGTGCA TGTGGAAGCATACTGATTAACTTTTTAGGAAGTCTCTTCTCGAATAAACG ACCGTCTATCGCTGTCACACTCCCTGGGCCCCCTACTTGTAGCTCGATTT TTCTACCGTAGACAGAGTGTCGGTTGCAACAATGTGGTGTTGTTGGATCA ACTTTGTCGAGATCTTCCCAAAAAACGTATCGTGGTTGCCACCATCTCCG TTGTAGACAATAGAAGAACTCAAAGTGTGGTATGATGTACGAAGTACTGC GTACTACGTGATGAGACCAACCGTTCGAAGTAGATCAAACTGGAAACTTC CGTAGGGACGATAAAAAACATTTTTTTCTTTTGCCACTCGGTTTTTGCTC ACATTGGGCGTAAAAGTGGAAAGCGATCAATTCGTGAGTAAACGAAGTTC GATCGTACCATCGACGAGGGAAAGGGACTGCTGTCCCCTTTCTCGCGATA AAAGCTCAACCAAAACGGCAAGCACCGCAGAGGGAAGTGGAGAAAAAAAA AAAAACTCCTATGTTGACTTCTCCCTGTGTGACCCCGGTTGGAGCGTCTA CCTACCCGAAAGGTGTAGAGTGGCGTCCAATGAAAGGGATGACAACACAC ACACTTAGTCACACAAGAGATGATGGATGCGGTAAAGCCTAACCCACAAA AAGGCTGGACGTTCCGGTGGGTATTCTACGTCTTCTGTGTGAGAGAGAAC GCCATGGACACCCCCCGCGCTTGTCGTTGGTTAGCGTGATATACAGCCAG GGTCTTGTCACGCAATGAATCTTCGCTGCCAGTAACATCTTGCAGATGAT GTCGTCCGATGCAAGTGAACAGTCGCACACTGTCATCACACGGCTCAGAT ATCACAACACAGCGGGGTTCGCCACTGCCGTTTTGTTTCATGATTCGCTG GGCAGTAAGGTTCACTTTTATGCCACTCCAGGCGATGAAGATTTGTACTG ATCCCATCAAGTGGGTACTTTGTCTCTCCCGCTTTCTGGTGTTAGCGAGT GCGTTGGTCTGGGTCTGCCCTCTGGAACAGCTGGACTACGATCACTACCT GCCGATGTTCTTCGACGGCATCCGATGCCTTGAAGAGCCGTGCACAACAT TAGCACGACAGGTCAGGCTCCGTCCCGTGTGTCGTGGAAGACAGATGTAA CTGCCCTTGTAGCTTTTGACGGGATGGTGTAAATGTAACTGCCCGTGTAG CTTTTGATGGAAACCCTGGCCAAGTTCTTCAGCACGATAGCTGAGGTGAG AAGTACTGAAACCAAGGATTGTTCCGGCAAAGCGGGTCTTTGTGTAAATG CAGGACGAGGTGCACCTGAACAGCAAGCACACAATGCTTGCAGTGCATGT TTTTGGCTTTGCAGCGCAGTAGAAGAAAGTACTGGTAGTAGCGGCATGGC TAAGCTTTAGTTTGATCCCGATACTATGTGGTGATGCAGTAAAAACAAAA CGTGGCCTACGGCTCACTTGTTTGTTATGTGAAATACGGCGAGCCGATTG CTCATTATTACTCTCATCGACGTTTTGATTCCATGTCGCATGGTTTCCGC CCGTGGGTTCACAAACTCCCAGGGCGTGTCGGACCTTTTGAGCGCCGCGC GAGGCTCTCCTGAGCGCATCTTGCCGTCACTGCCGAACATCATGCGAGCC ATTAGGTTGGCCATCTCGTGCAAGAACCCGGGGGTGATTATCTTCGCCTG CAGTGCCCTACGTCAGCTCGCCACCGGGAACAAAGAGGTTCGTTCGTACA GTGCAGTCAACGACAACAGTCGCCGCGAGCCATCGTCGCTTAGAGATGTT TGTTTGCGTTGTCGGCATTTACCCGCCTCCCACGGGCCTCCTCTAGCACC TTCTTCTAGATTGACTGGTTGTGGAACATATCGTTGCCTCCTCTTGTTGT GCAAATAAACCCCTTGCACTCAAAAACCGATTTTCTACACATGTCCATGA ATCGCGTCTGTCTTACCACCCTCTGTCGTTGACTTGTTGAACAGGTCGGA GAAGCTTTGGTGCCATACTACAAGATGTTTTTGAACCTGTTCAACATTTT CATGAACTCCACCAGGAGCACCGGGGATAGGATAGATTACGGACAAAGGT AAAATAAAGCATGCCCGTTATATGGGGGTATGATATGGTACGACAAAAGA GATAGTGCTGCACGTAGGACGGCGTATCATTCGAAACTGGCGGATGGTAG AGTATTGCAGTGTTTTGTGGTACGTAGCGTATGATCGAAATAATCCTTCA TACTTCGTGTGAGATACGGTTTCTGGTATTAGCTCGAAACCTTTACCTTG CGCTTCTAGGCGCAGACCTGCTTTCATGTTGGTTCATTCCAGCGTAGAGA TCTACAAGACTGCACTTTATGGTGCTACTTTAAATTGCTACTGCCCTTGT CGACAACTGTATATTTTCCTAAGGAATAACCAAGATATTGGCAAGGCCAT CTCAGACACGGTGGAGACACTAGAGCGCAGCGGCGGAAAGGATGCGTTTG GTCACATTAAGCATTGCATACCCACATGTGAGCGTGACGCTTTGTGCACC AGTTGCATCACCAGCTTTGTCTACTCCCCGACGAGTGAAAGGCAGCATCA TAACTTCGTGACTTTCCGAGTATACGGTGCTTACGTGTCAGCCGGGGTTA ACCAATATGGGGTTCACCACAACACGAAGGGGGTACACATATATGTCAAA GCAAAACTGATATGTGAAAACAAAACTACTGCGCGATTGGGTATCATTTT ACATTCCCAGGGAGATACCCGCACGTTCGTCAGAGCAATGTTCTTCTACT CTTGCCCCAATATCCGCTCCCACCCGGTACACACACAGCTCACAATGGTA TACGTCGTGGCTTTGGTGCGAAACCTCCAGCACAGCGTGAAGTAGCTTGC AGTTGAGCTCTCCTGCAGATTCTCAGCAGCACTGACGTAGGAATGATCCG AACTCGGAGATATCCCCATGATGGTTTTGTGGGAAACACGCGTGTACAGA TACGAAAGCCCCGCATTCATTGAAGAGCATCCCATCATTTGCTGAACCTT GATACATGTCGCGACTGATCGTGATGCCGCACTTTCTTCCTCTGCTGGCC CCGATTCCTTTCGCTCACCCATGAACCCACGGACGACAGATCAAACGTGC ATGGCGTGACCGGCGACAAGCTGGATGGATCGGCTCCAGCCAGGCCCAAA GCCGGACTGACTTCGTTTGAAGGTTTAAAAAAAAACGCTGTCATACATCA CAGCTGCGTCCTCCGTTACACAGACGTCGCGGATCGACACGTGATTGGTT GGTTGTATGCGTTTGTTTGTTGTATTTTTGAGTTCGTCCACTTTTTTTTT GTACTAAATTGGTCGTTGTAGATGGTGCAGCTCATGGGTGGCCCGGCCAA CGGAACCACCACACCGTTCAACGTGCCTCTTGTACAGCAATTTTGCGGTT GTCTGCCACGTGAGCTCTGGGATCGAGAGTACGAGTTAGATGCCGGTCCC AAGTATATAGACGTCTCGTGGATGTCAGGACCGCCAACTGCTTCGAGCGA TTTTCGCCGCGCTCTATAAATGTCATAGCTGCCACGCGTATGACATTCAT TCAAATTTCGGGAGAGGGGGGCTTGCAGTACCTCGGATGGTTTCTGCAGT CCTATGTTGGCCAGTGCCTCGATCTCAAAACAGGAGTTCAGTGCACTAGC AAGAGCTTTATTTTGTGGCGACTCGCTGTACCAGTGTGGGAGCAGTATCT GTAGGCTACTGGCCGTGTGAGGGGTTGCCGTTTTTTTGTGATACTGCTGT AGCCCAGGCTTTCATATTTAATTACCTTCTGTGGCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig17:818852..823537-

>mRNA_P-littoralis_Contig17.197.1 ID=mRNA_P-littoralis_Contig17.197.1|Name=mRNA_P-littoralis_Contig17.197.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1317bp|location=Sequence derived from alignment at P-littoralis_Contig17:818852..823537- (Pylaiella littoralis U1_48)
ATGCCGGCAACCCGTGCTCCTGAGGTGGCTTGTATCGGTCAGAGCAGTCG
TGGGACTGCCGGAGTTTACGAGCTTCAGCTTCGGCGCAAGCTTTTACAGC
AACAATTGGGAGTAGTCGACGATAGGTGCCAACGGGTTGCTAAGGTGGTC
GCCAAGAAACATTTGGCGAGGCTTTCCCGTCCAGAACAACCGGGGCAGCG
CCCGGTCCCTGGGAGAGATGTCGCCCATCGGCGGCAAAAAATCATCACAA
ACCCAGGTGGGCTACCATCAATATGCGTGGCGGGTGTAGGTGGTGGAGAA
AAAATCCGCAAGCAACAAAATATTGGCCTGACAGGCGGTCGCCCAGCGGC
TACCGACAAAGCAGCTAATCAAGAACGAGATGCTTCGCAGCACAAGCAGA
ATCTCTTAGCAGCAGCACCATTCAAGAGAGGTGGTTGTATCGACCACACT
AGAAAGAAACAGATGTTGCAGGACAAACAGCGAGAGATAGAACAACAGGC
TGCTCTGGAGAAGAAATTGCGGCCAGGCAGGAAGGGGTTAGGTGTGAGAG
ATGAGGTGGCAGCGGCGCCGTCCGCGTTCCCAGACCAATATCTCCGAGGA
GAGGTGCCTTGCTCCAAACACTGCTCTGCAGCGAGTGCGTTGGTCTGGGT
CTGCCCTCTGGAACAGCTGGACTACGATCACTACCTGCCGATGTTCTTCG
ACGGCATCCGATGCCTTGAAGAGCCGTGCACAACATTAGCACGACAGGGC
GTGTCGGACCTTTTGAGCGCCGCGCGAGGCTCTCCTGAGCGCATCTTGCC
GTCACTGCCGAACATCATGCGAGCCATTAGGTTGGCCATCTCGTGCAAGA
ACCCGGGGGTGATTATCTTCGCCTGCAGTGCCCTACGTCAGCTCGCCACC
GGGAACAAAGAGGTCGGAGAAGCTTTGGTGCCATACTACAAGATGTTTTT
GAACCTGTTCAACATTTTCATGAACTCCACCAGGAGCACCGGGGATAGGA
TAGATTACGGACAAAGGAATAACCAAGATATTGGCAAGGCCATCTCAGAC
ACGGTGGAGACACTAGAGCCATTGCATACCCACATATCAAACGTGCATGG
CGTGACCGGCGACAAGCTGGATGGATCGGCTCCAGCCAGGCCCAAAGCCG
GACTGACTTCGTTTGAAGGTTTAAAAAAAAACGCTGTCATACATCACAGC
TGCGTCCTCCGTTACACAGACGTCGCGGATCGACACGTGATTGGTTGGTT
GTATGCGTTTGTTTGTTGTATTTTTGAGTTCGTCCACTTTTTTTTTGTAC
TAAATTGGTCGTTGTAG
back to top