mRNA_P-littoralis_Contig17.173.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.173.1
Unique NamemRNA_P-littoralis_Contig17.173.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:745086..745664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size581
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionMajor Facilitator Superfamily (MFS) protein domains
Ec32 orthologEc-06_007360.4
Cds size417
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789813.451303-UTR-P-littoralis_Contig17:745085..7452471680789813.451303-UTR-P-littoralis_Contig17:745085..745247Pylaiella littoralis U1_48UTRP-littoralis_Contig17 745086..745247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789813.4616134-CDS-P-littoralis_Contig17:745247..7456641680789813.4616134-CDS-P-littoralis_Contig17:745247..745664Pylaiella littoralis U1_48CDSP-littoralis_Contig17 745248..745664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.173.1prot_P-littoralis_Contig17.173.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 745248..745664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.173.1

>prot_P-littoralis_Contig17.173.1 ID=prot_P-littoralis_Contig17.173.1|Name=mRNA_P-littoralis_Contig17.173.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
MCFVCACACVFMCTLSSHPFWTPVCTFRCASWVHPPGDNTCQEEGQRRII
ICFIHRDHTGGRRSIQDHDFNLHRPSCGVLALGSSREGGSTSPFPSASFL
ELDFGYMYHSQKLSLFHSYSRCYARKSPSPPGMRIARLP
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mRNA from alignment at P-littoralis_Contig17:745086..745664+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.173.1 ID=mRNA_P-littoralis_Contig17.173.1|Name=mRNA_P-littoralis_Contig17.173.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=579bp|location=Sequence derived from alignment at P-littoralis_Contig17:745086..745664+ (Pylaiella littoralis U1_48)
TGGGCATAGGGACAGAGAGAAAAAAGAGAAGATTTGGGATTCTCTCGACT
TTCTTCTTTGCGTCTTCAAGAATTTTGAAGCATTAACGGAACGCCTGTTA
TACCTGGGACGGAACCCAATATAATTTTTTGTTCTGAATTCCTGACAGGA
ACGGTTCGGTGAATGTGTTTTGTGTGTGCATGTGCGTGTGTGTTTATGTG
TACGTTGTCATCCCATCCGTTCTGGACGCCAGTCTGTACCTTTCGGTGTG
CAAGCTGGGTACACCCACCGGGGGATAACACCTGTCAGGAGGAAGGTCAA
CGCAGAATCATTATTTGCTTTATCCACCGGGATCACACAGGAGGAAGAAG
GTCAATACAGGATCATGATTTTAATCTCCACCGCCCTTCCTGTGGTGTGC
TTGCCTTAGGTTCATCGCGAGAAGGGGGTTCCACCAGTCCCTTTCCCTCG
GCGTCCTTTCTCGAGTTGGATTTCGGTTATATGTACCACTCCCAAAAGTT
ATCGCTTTTCCACTCCTACAGTAGATGTTATGCGAGAAAAAGTCCCAGCC
CGCCGGGGATGCGAATCGCGAGGCTTCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:745086..745664+

>mRNA_P-littoralis_Contig17.173.1 ID=mRNA_P-littoralis_Contig17.173.1|Name=mRNA_P-littoralis_Contig17.173.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig17:745086..745664+ (Pylaiella littoralis U1_48)
ATGTGTTTTGTGTGTGCATGTGCGTGTGTGTTTATGTGTACGTTGTCATC
CCATCCGTTCTGGACGCCAGTCTGTACCTTTCGGTGTGCAAGCTGGGTAC
ACCCACCGGGGGATAACACCTGTCAGGAGGAAGGTCAACGCAGAATCATT
ATTTGCTTTATCCACCGGGATCACACAGGAGGAAGAAGGTCAATACAGGA
TCATGATTTTAATCTCCACCGCCCTTCCTGTGGTGTGCTTGCCTTAGGTT
CATCGCGAGAAGGGGGTTCCACCAGTCCCTTTCCCTCGGCGTCCTTTCTC
GAGTTGGATTTCGGTTATATGTACCACTCCCAAAAGTTATCGCTTTTCCA
CTCCTACAGTAGATGTTATGCGAGAAAAAGTCCCAGCCCGCCGGGGATGC
GAATCGCGAGGCTTCCA
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