mRNA_P-littoralis_Contig17.168.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.168.2
Unique NamemRNA_P-littoralis_Contig17.168.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig17.168.2 vs. uniprot
Match: D7FJH2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJH2_ECTSI)

HSP 1 Score: 522 bits (1345), Expect = 1.060e-180
Identity = 281/352 (79.83%), Postives = 306/352 (86.93%), Query Frame = 3 
Query:  138 MSAMRKICLLLLAASAAVPASAFMGPLPLTKQTARTQQRWAEGTRSATECQGRRQRSSVPNMAATAG-MGGDAMLP--EEETDIFALIRPLTEGPVFIGLQAVFVIALLGLVDAGFSGDWQARGLLSDAAAATARTACLTAGAAHVVLTAAAGFIAQAKGGELAGAAVTLATGPLGFLKVAALPDQEELEAIAASKAPPLSMVINTMELSDRQTPAAVVLSTSIKARQGREGTLRNLLESLVKETVENEKELVFTCTVNQDPEDRTTFFMLQRFPSPEAMSRYQNTDTFQAFTDGAEECIAEPMGLYMVNERSGKLGEPVHPFGPGGEGGRDDAIYSSPANLQGSLVPGAER 1184
            M  +  +CL L AASA +P S F+ PLP+  Q AR QQRWA+G RS TEC+GR   SS   ++ TAG MGGDA +P  EE TD FA +RPLTEGP+F GLQAVFV+AL GLVDAGFSGDWQARG LSDAAA TARTACLTA AAHVVLT AAGFIA+AKG  +  A +TLATGPLGFLKVAA+PDQEELEAIAASKAPPLSMVINT+ELS RQTP AVVLSTSIKA++GREGTLRNLLESLV+ETV+N+K+LVFTCTVNQDPEDRT FFMLQRFPSPEAMS YQNTDTFQ+FTDGAEECIAEPMGLYMVNERSGKLGEPVHPFGPGGEGGRDDAIYSSPANLQGSLVPGA R
Sbjct:    1 MGKVSGLCLFL-AASAVLPTSGFVAPLPIRTQAARAQQRWADGARSTTECRGR---SSCSALSMTAGAMGGDATVPDLEEGTDFFAALRPLTEGPIFNGLQAVFVVALAGLVDAGFSGDWQARGYLSDAAADTARTACLTAAAAHVVLTGAAGFIAKAKGEGIGAAMITLATGPLGFLKVAAMPDQEELEAIAASKAPPLSMVINTLELSGRQTPGAVVLSTSIKAKKGREGTLRNLLESLVEETVDNQKDLVFTCTVNQDPEDRTAFFMLQRFPSPEAMSSYQNTDTFQSFTDGAEECIAEPMGLYMVNERSGKLGEPVHPFGPGGEGGRDDAIYSSPANLQGSLVPGAVR 348
[Close]
BLAST of mRNA_P-littoralis_Contig17.168.2 vs. uniprot
Match: A0A835YX85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX85_9STRA)

HSP 1 Score: 218 bits (554), Expect = 8.530e-62
Identity = 145/344 (42.15%), Postives = 196/344 (56.98%), Query Frame = 3 
Query:  171 LAASAAVPASAFMGPLPLTKQTARTQQRWAEGTRSATEC-QGRRQRSSVPNMAATAGMGGDAMLPEEETDIFALIRPLTEGPVFIGLQAVFVIALLGLVDAGFSGDWQARGLLSDAAAATARTACLTAGAAHVVLTAAAGFIAQAKGGELAGAAVT-LATGPLGFLKVAALPDQ----EELEAIAASK---APPLSMVINTMELSDRQTPAAVVLSTSIKARQGREGTLRNLLESLVKETVENEKELVFTCTVNQDPEDRTTFFMLQRFPSPEAMSRYQNTDTFQAFTDGAEECIAEPMGLYMVNERSGKLGEPVHPFGPGGEGGRDDAIYSSPANLQGSLVPG 1175
            LA+  A  A AF+     +  + R QQR    +   + C  G   R+++  +AA+        +   +T    L+ P+T+   +   QA + IA LGL+D GFSGDW   G +S+      + A    GA HV    AA  +A  KG   A A  T L TG L  ++VA + D     + +EA A +     PP+   IN++E+    +P  ++LSTSI+ ++G EG +RNLLE L  E        V T  VNQDPEDR  FF+LQRFPS  AMS +Q +  F++FT  +E  + EPMGLY+VNERSGK+ EPV+PFGPGGEGGRDDA+YSSPANLQGS   G
Sbjct:   12 LASILAGTAVAFVPGSTTSVNSLRPQQRSCADSAPFSRCGAGATSRAALHRLAASNEDELVETVTHADTAAELLLHPITDTIGYRVGQAAYGIAFLGLIDGGFSGDWVKFGYISEGLEGQLKLAAYVIGAVHVASAIAAARLASGKGQNAAIAFGTGLVTGLLELVRVAGVYDDGVKAKAVEAAAVANDLHKPPMQTQINSLEMDTTNSPTGLMLSTSIRVKEGAEGPMRNLLEELSAEARGAHASTVATMAVNQDPEDRRAFFVLQRFPSMRAMSSFQTSAAFKSFTTASEALLEEPMGLYLVNERSGKMTEPVYPFGPGGEGGRDDAVYSSPANLQGSQSRG 355
[Close]
BLAST of mRNA_P-littoralis_Contig17.168.2 vs. uniprot
Match: A0A835YS87_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS87_9STRA)

HSP 1 Score: 199 bits (507), Expect = 9.040e-56
Identity = 125/274 (45.62%), Postives = 170/274 (62.04%), Query Frame = 3 
Query:  384 ALIRPLTEGPVFIGLQAVFVIALLGLVDAGF-SGDWQA-RGLLSDAAAATARTACLTAGAAHVVLTAAAGFIAQAKGGELAGA-AVTLATGPLGFLK-VAALPDQEELE------AIAASKAPPLSMVINTMELSDRQTPAAVVLSTSIKARQGREGTLRNLLESLVKETVENEKELVFTCTVNQDPEDRTTFFMLQRFPSPEAMSRYQNTDTFQAFTDGAEECIAEPMGLYMVNERSGKLGEPVHPFGPGGEGGRDDAIYSSPANLQGSLVPG 1175
            A + P+T+   F   Q  +      L  +G  +G W   +G+ +++       A  TAG  H+V+  AA ++A   G ++  A    LATG L  L+ +  L D+E+ E      +    K PPL M I++  LS   +P  V+LSTSI AR+G E  +R LLE+L +ET   +++LV T  VNQDP +R +FFMLQRFPS +AMSR+Q +  F+AFTD AE  I EPMGLY+VNERSG++ EPV+PFGPGGEGGRDDA++SSP NLQGS   G
Sbjct:   21 ASLNPITDSTGFRVAQKAYAAGFATLATSGLVAGQWIVDQGIWTESTQQLVAQAATTAGGVHLVMACAAAWVASTNGADVPAAFGAGLATGALELLRSLGYLSDEEKAEQQKNRNSDEERKLPPLQMEISS--LSFASSPTGVMLSTSICAREGCELAMRTLLETLARETGSAQRDLVGTMAVNQDPGERRSFFMLQRFPSIQAMSRHQTSAPFKAFTDAAEALIEEPMGLYLVNERSGRMTEPVYPFGPGGEGGRDDAVFSSPVNLQGSQGRG 292
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BLAST of mRNA_P-littoralis_Contig17.168.2 vs. uniprot
Match: A0A7S2SVQ8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVQ8_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.190e-29
Identity = 86/266 (32.33%), Postives = 136/266 (51.13%), Query Frame = 3 
Query:  390 IRPLTEGPVFIGLQAVFVIALLGLVDAGFSGDWQARGLLSDAAAATARTACLTAGAAHVVLTAAAGFIAQAK----GGELAGAAVTLATGPLGFLKVAALPDQEELEAIAASKAPPLSMVINTMELSDRQTPAAVVLSTSIKARQGREGTLRNLLESLVKETVENE--KELVFTCTVNQDPEDRTTFFMLQRFPSPEAMSRYQNTDTFQAFTDGAEECIAEPMGLYMVNERSGKLGEPVHPFGPGGEGGRDDAIYSSPANLQGSLV 1169
            +  LT  P+++ L+A   +AL GL+  G             A    A+   L+    HV+     G +AQ K    G ++A AA   A G L   + AAL D+E +E   A     L   I++  +++R +P  V+  T ++   GRE  +   L        EN+     + +  +NQDP+++  F + +RF S +   ++Q ++ ++   +G ++C+  PMGLYM      K+ EP +PFGPGGEGGRDDAI+S+PAN  GSL 
Sbjct:   72 VAALTGSPLYLALEACQPLALAGLLAVGLLHPEGVDDSTWLACQGAAKALALS----HVLSAGVCGALAQGKDLDAGPQVARAA---AFGALELARTAALDDRETMEGKNAGL---LQTEISSYSMTERMSPQGVLFVTQMEVLPGREYAVAKRLRDYAHAVTENKLSNRRILSIAINQDPQEKNCFTITERFSSLKTFYKHQESELYKTLVNGIQDCLRTPMGLYMTRNEHHKISEPRYPFGPGGEGGRDDAIFSNPANTDGSLT 327
[Close]
BLAST of mRNA_P-littoralis_Contig17.168.2 vs. uniprot
Match: A0A7S2WVP1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVP1_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.940e-28
Identity = 73/209 (34.93%), Postives = 114/209 (54.55%), Query Frame = 3 
Query:  561 HVVLTAAAGFIAQAK----GGELAGAAVTLATGPLGFLKVAALPDQEELEAIAASKAPPLSMVINTMELSDRQTPAAVVLSTSIKARQGREGTLRNLLESLVKETVENE--KELVFTCTVNQDPEDRTTFFMLQRFPSPEAMSRYQNTDTFQAFTDGAEECIAEPMGLYMVNERSGKLGEPVHPFGPGGEGGRDDAIYSSPANLQGSLV 1169
            HV+     G +AQ K    G ++A AA   A G L   + AAL D+E +E   A     L   I++  +++R +P  V+  T ++   GRE  +   L        EN+     + +  +NQDP+++  F + +RF S +   ++Q ++ ++   +G ++C+  PMGLYM      K+ EP +PFGPGGEGGRDDAI+S+PAN  GSL 
Sbjct:   31 HVLSAGVCGALAQGKDLDAGPQVARAA---AFGALELARTAALDDRETMEGKNAGL---LQTEISSYSMTERMSPQGVLFVTQMEVLPGREYAVAKRLRDYAHAVTENKLSNRRILSIAINQDPQEKNCFTITERFSSLKTFYKHQESELYKTLVNGIQDCLRTPMGLYMTRNEHHKISEPRYPFGPGGEGGRDDAIFSNPANTDGSLT 233
[Close]
BLAST of mRNA_P-littoralis_Contig17.168.2 vs. uniprot
Match: A0A7S1JNT6_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JNT6_9ALVE)

HSP 1 Score: 112 bits (280), Expect = 1.220e-23
Identity = 76/264 (28.79%), Postives = 132/264 (50.00%), Query Frame = 3 
Query:  381 FALIRPLTEGPVFIGLQAVFVIALLGLVDAGFSGDWQARGLLSDAAAATARTACLTAGAAHVVLTAAAGFIAQAKGGEL-AGAAVTLATGPLGFLKVAALPDQEELEAIAASKAPPLSMVINTMELSDRQTPAAVVLSTSIKARQGREGTLRNLLESLVKETVENEKELVFTCT---VNQDPEDRTTFFMLQRFPSPEAMSRYQNTDTFQAFTDGAEE--CIAEPMGLYMVNERSGKLGEPVHPFGPGGEGGRDDAIYSSPANL 1154
            F  +R      +F+G++ + +      VD G++GDW   G L++   A AR          +     + F+A +KG +    AA T   G    ++V    D+E  E     +  PL  +  + +L D  +   ++LS  +K+R+ +    + L+    +   + + E + T +   VNQDP  R  F +++RF     + R+QN   F++F    ++  C+ EP+ L++V +  G++    +PFGPGGEGGRDDA++SSP NL
Sbjct:   58 FEGVRQYLNSNLFVGVELLLLFLFFSSVDCGWTGDWSMLGWLTNDVEAYARQTVYALLGIRLFAAPVSAFLAVSKGLDWRVNAARTFLFGVADMMRVGLADDKETREYKRFRETEPLHDIFTSDQLLDNVSERGLMLSMVLKSRKEKAPVTQELVRKYYEYVKQVDVETMHTVSAINVNQDPRGRLDFIIVERFADIPHLIRHQNEPAFKSFVAALQDDDCLEEPINLHIVGDADGQVQINRYPFGPGGEGGRDDALFSSPINL 321
[Close]
BLAST of mRNA_P-littoralis_Contig17.168.2 vs. uniprot
Match: A0A0G4H4B5_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H4B5_VITBC)

HSP 1 Score: 112 bits (280), Expect = 5.940e-23
Identity = 76/264 (28.79%), Postives = 132/264 (50.00%), Query Frame = 3 
Query:  381 FALIRPLTEGPVFIGLQAVFVIALLGLVDAGFSGDWQARGLLSDAAAATARTACLTAGAAHVVLTAAAGFIAQAKGGEL-AGAAVTLATGPLGFLKVAALPDQEELEAIAASKAPPLSMVINTMELSDRQTPAAVVLSTSIKARQGREGTLRNLLESLVKETVENEKELVFTCT---VNQDPEDRTTFFMLQRFPSPEAMSRYQNTDTFQAFTDGAEE--CIAEPMGLYMVNERSGKLGEPVHPFGPGGEGGRDDAIYSSPANL 1154
            F  +R      +F+G++ + +      VD G++GDW   G L++   A AR          +     + F+A +KG +    AA T   G    ++V    D+E  E     +  PL  +  + +L D  +   ++LS  +K+R+ +    + L+    +   + + E + T +   VNQDP  R  F +++RF     + R+QN   F++F    ++  C+ EP+ L++V +  G++    +PFGPGGEGGRDDA++SSP NL
Sbjct:  166 FEGVRQYLNSNLFVGVELLLLFLFFSSVDCGWTGDWSMLGWLTNDVEAYARQTVYALLGIRLFAAPVSAFLAVSKGLDWRVNAARTFLFGVADMMRVGLADDKETREYKRFRETEPLHDIFTSDQLLDNVSERGLMLSMVLKSRKEKAPVTQELVRKYYEYVKQVDVETMHTVSAINVNQDPRGRLDFIIVERFADIPHLIRHQNEPAFKSFVAALQDDDCLEEPINLHIVGDADGQVQINRYPFGPGGEGGRDDALFSSPINL 429
[Close]
BLAST of mRNA_P-littoralis_Contig17.168.2 vs. uniprot
Match: A0A7S2PVS3_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PVS3_9DINO)

HSP 1 Score: 86.3 bits (212), Expect = 1.070e-15
Identity = 47/128 (36.72%), Postives = 72/128 (56.25%), Query Frame = 3 
Query:  759 DRQTPAAVVLSTSIKARQGREGTLRNLLESLVKETVENEKELVFTCTVNQDPEDRTTFFMLQRFPSPEAMSRYQNTDTFQAFTDGAEECIAEPMGLYMVNERSGKLGEPVHPFGPGGEGGRDDAIYSS 1142
            D  + +A++ + +++A  G EG L   +   V         LV T +  Q+ ED   F +L R+ S   M  +Q   +F+   D  E  + +P+GLY+++E+ G+ G   +PFGPGGEGGRDDAIYSS
Sbjct:   70 DGVSSSAIMQTMTLRAEAGSEGRLARQINRFV--AASRTDGLVMTASATQNQEDPCDFMVLLRYESMHTMRDHQTQASFKEMLDKMEPHLEKPIGLYLMDEQFGQAGMARYPFGPGGEGGRDDAIYSS 195
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BLAST of mRNA_P-littoralis_Contig17.168.2 vs. uniprot
Match: A0A1X6NUX0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUX0_PORUM)

HSP 1 Score: 85.1 bits (209), Expect = 5.790e-15
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 3 
Query:  885 VFTCTVNQDPEDRTTFFMLQRFPSPEAMSRYQNTDTFQAFTDGAEECIAEPMGLYMVNERSGKLGEPVHPFGPGGEGGRDDAIY 1136
            V    VNQDP D   F ++QRFP P  M  +Q+  ++ AF   A+  +AE +G+Y+  E  GK+G+ ++P+GP GEGGRDD +Y
Sbjct:  153 VLNFVVNQDPSDPAYFQVIQRFPGPTGMVAHQSGASYSAFVRSAQPLLAESLGVYLCKESGGKIGQALYPWGPKGEGGRDDMVY 236
[Close]
BLAST of mRNA_P-littoralis_Contig17.168.2 vs. uniprot
Match: A0A813LUA9_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LUA9_POLGL)

HSP 1 Score: 83.6 bits (205), Expect = 1.810e-14
Identity = 51/146 (34.93%), Postives = 78/146 (53.42%), Query Frame = 3 
Query:  729 SMVINTMELSDRQTPAAVVL-STSIKARQGREGTLRNLLESLVKETVENEKELVFTCTVNQDPEDRTTFFMLQRFPSPEAMSRYQNTDTFQAFTDGAEECIAEPMGLYMVNERSGKLGEPVHPFGPGGEGGRDDAIYSSPANLQGS 1163
            SM ++++ ++    P   +L S SI+A  G E  L   +  LV     +    V + +  Q+ ED   F +  R+ S   M  +Q   +F+   +  E+ + +P+GLY+ +E+ G +G   HPFGPGGEGGRDDAIYSS     GS
Sbjct:   87 SMEVSSLGMAQDGLPKNGLLQSMSIRAAAGSERRLARQVGKLVASAQADPA--VLSASAIQNKEDPCDFVVFLRYSSMRQMETHQTGPSFKPLLEAMEQQLEQPIGLYLADEQLGHIGMARHPFGPGGEGGRDDAIYSSRKRADGS 230
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.168.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FJH2_ECTSI1.060e-18079.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YX85_9STRA8.530e-6242.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YS87_9STRA9.040e-5645.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SVQ8_9STRA1.190e-2932.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2WVP1_9STRA2.940e-2834.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1JNT6_9ALVE1.220e-2328.79Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A0G4H4B5_VITBC5.940e-2328.79Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S2PVS3_9DINO1.070e-1536.72Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A1X6NUX0_PORUM5.790e-1544.05Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A813LUA9_POLGL1.810e-1434.93Hypothetical protein n=2 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:725636..732667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJH2
Model size1755
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons9
Evalue6.01e-185
EggNOG OGs2EVYF@1|root,2SXV4@2759|Eukaryota
Ec32 ortholog descriptionDimeric alpha-beta barrel
Ec32 orthologEc-04_006110.1
Cds size1050
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.168.2prot_P-littoralis_Contig17.168.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 726204..732008 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789820.4099555-UTR-P-littoralis_Contig17:725635..7262031680789820.4099555-UTR-P-littoralis_Contig17:725635..726203Pylaiella littoralis U1_48UTRP-littoralis_Contig17 725636..726203 -
1680789820.4989564-UTR-P-littoralis_Contig17:732008..7320511680789820.4989564-UTR-P-littoralis_Contig17:732008..732051Pylaiella littoralis U1_48UTRP-littoralis_Contig17 732009..732051 -
1680789820.509331-UTR-P-littoralis_Contig17:732573..7326671680789820.509331-UTR-P-littoralis_Contig17:732573..732667Pylaiella littoralis U1_48UTRP-littoralis_Contig17 732574..732667 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789820.4222677-CDS-P-littoralis_Contig17:726203..7262331680789820.4222677-CDS-P-littoralis_Contig17:726203..726233Pylaiella littoralis U1_48CDSP-littoralis_Contig17 726204..726233 -
1680789820.4306962-CDS-P-littoralis_Contig17:727331..7274781680789820.4306962-CDS-P-littoralis_Contig17:727331..727478Pylaiella littoralis U1_48CDSP-littoralis_Contig17 727332..727478 -
1680789820.4409502-CDS-P-littoralis_Contig17:727931..7280331680789820.4409502-CDS-P-littoralis_Contig17:727931..728033Pylaiella littoralis U1_48CDSP-littoralis_Contig17 727932..728033 -
1680789820.4488702-CDS-P-littoralis_Contig17:728580..7287801680789820.4488702-CDS-P-littoralis_Contig17:728580..728780Pylaiella littoralis U1_48CDSP-littoralis_Contig17 728581..728780 -
1680789820.456781-CDS-P-littoralis_Contig17:729346..7294131680789820.456781-CDS-P-littoralis_Contig17:729346..729413Pylaiella littoralis U1_48CDSP-littoralis_Contig17 729347..729413 -
1680789820.467141-CDS-P-littoralis_Contig17:730730..7309401680789820.467141-CDS-P-littoralis_Contig17:730730..730940Pylaiella littoralis U1_48CDSP-littoralis_Contig17 730731..730940 -
1680789820.4806364-CDS-P-littoralis_Contig17:731341..7314861680789820.4806364-CDS-P-littoralis_Contig17:731341..731486Pylaiella littoralis U1_48CDSP-littoralis_Contig17 731342..731486 -
1680789820.488739-CDS-P-littoralis_Contig17:731859..7320081680789820.488739-CDS-P-littoralis_Contig17:731859..732008Pylaiella littoralis U1_48CDSP-littoralis_Contig17 731860..732008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.168.2

>prot_P-littoralis_Contig17.168.2 ID=prot_P-littoralis_Contig17.168.2|Name=mRNA_P-littoralis_Contig17.168.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=350bp
MSAMRKICLLLLAASAAVPASAFMGPLPLTKQTARTQQRWAEGTRSATEC
QGRRQRSSVPNMAATAGMGGDAMLPEEETDIFALIRPLTEGPVFIGLQAV
FVIALLGLVDAGFSGDWQARGLLSDAAAATARTACLTAGAAHVVLTAAAG
FIAQAKGGELAGAAVTLATGPLGFLKVAALPDQEELEAIAASKAPPLSMV
INTMELSDRQTPAAVVLSTSIKARQGREGTLRNLLESLVKETVENEKELV
FTCTVNQDPEDRTTFFMLQRFPSPEAMSRYQNTDTFQAFTDGAEECIAEP
MGLYMVNERSGKLGEPVHPFGPGGEGGRDDAIYSSPANLQGSLVPGAER*
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mRNA from alignment at P-littoralis_Contig17:725636..732667-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.168.2 ID=mRNA_P-littoralis_Contig17.168.2|Name=mRNA_P-littoralis_Contig17.168.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=7032bp|location=Sequence derived from alignment at P-littoralis_Contig17:725636..732667- (Pylaiella littoralis U1_48)
TTTGCACCTGGCACACCAACTGCGACCCAACTCTACCGCCACGCCCGTGG
CGTTCGACCACAGCGCAGCAGCAAGAAGGTATCATTCCTTGAGGGTGAGT
CCGGCCTTACACCCGCCAGAAAGACCCCCCCAACTCGCTTTGGGTCAGCT
TACAGCAGACCTTGCCTCGGCAGCGAGGGAAGGGAGAGGGTTATCCTACG
TATACTCAATGGGAGCTGCCATTATTATTTTTCGATTTTTCATAGCCTTC
TACACAGTAGCCAGGTCAGCAGGTCGGCACGCTTGTTCCGCCGCTGAATG
GTACCAGTGTGAGATACGAAGTATGTAAAAGAGAACGAATCTTCCCACGT
GCAGCGTTGACTTAAAATATTTCTCGCCCGTTTGCCTCTGTTCAGTACAG
CAGTGCATCCGCAAGAGGTCGGCGGGCCCCGCTGGCTGTTCAGCAAGCGT
CTGTGGTTTCCTTTGCTTGTGCGTCATCCCCACCCACCCACCCACCCACC
CACCCACCCCTCTGCTTGTTCTGCCGACCCCTTCCTCCCTCCCCGTGTTC
GCCGCCGCCGTTGCACGACTGACTGCTGTTCAAACAACCCCCCCGGAAAC
GTGCGACGCTCGAAAGGTGTAGGTATCGTTTCGTGCATCACTTCGCGTTC
TGTTGCATCATGTCCGCGATGAGGAAGATTTGCTTGCTGCTCCTGGCCGC
GTCGGCTGCCGTGCCTGCCTCGGCCTTCATGGGACCGCTGCCGCTTACGA
AACAAACCGCGAGGACCCAGCAGCGATGGGCCGAGGGGACTCGATCAGCG
ACGGAATGGTGAGGAAGAGAGACACTTTTTGTTTGTTTTTTATGCCATGA
ACAATCACGCTTTATTTTCTAATGGAAACTGTTTCTTGTTATTCTCTGCT
AGTGTAAACAGCAGGTGCTCCATCCGCAACATGTCCCCGTCCAAAACCAC
GACCCACCGAGATCATGTATGCCGTACATACTATTGTAGCATCGCCGTCC
ACTGCGCTCCGCGACAGCGTGAGGTCGCCATGCTCTTCATTTTCACATTT
ACTTGCGTCCGTTTCGTTGTTTCCTGTTTTTGAGGTATTCTATGATGTGA
TACCGCCGTGTTGACGGGTGGTGACTCCTCGTACTGGTGTGTATTGTGCG
CGCACGGAATGCTCATTTGTCAATTTTGCAGCCAAGGACGGCGGCAACGT
TCTTCGGTGCCGAACATGGCCGCCACCGCCGGGATGGGGGGCGACGCGAT
GTTGCCCGAGGAGGAAACGGACATTTTTGCTTTGATCCGGCCCTTGACAG
AGGGACCGGTTTTCATCGGCCTTCAGGTAAATAACTTTGTCGTTTGCAGT
ACGTACAACAGTCAACAGGCGCACGGCTACCGTAGAGATTTCCTCTCCTT
CGGCGTCGGCCTGCCTTGGGGTTTTCGTGTATCGTGCCACACTGCACAGG
GACACGAGCGGCACACAACGAAAACTGCAGCAGCTGCGTACAGGTAATGA
TGTGTGCATTCGAGTCAAAGTGCAAGCACCGAAAGCATTTGTTCTTCTCT
TGTTTTGCCGTCGTGCTCTTGCGTGGCTGCGTTGCGTTAGATATTTGCAG
ACTACCGTCACCTCTGTTCGAGATATCTTATGCCCCGCCTCCCCGCCGCC
GCTCCCGTTTATGTCCCTCGGGCTATGTAATACATGTACATCCCGTCTTC
AAAAATGCACCTATCCGTATGATGTAGGCGGTGTTTGTTATCGCTCTATT
AGGGCTCGTGGACGCAGGGTTTTCCGGGGACTGGCAGGCGAGAGGCCTCC
TGAGTGACGCGGCCGCGGCCACGGCACGAACGGCGTGTCTCACCGCGGGA
GCGGCGCACGTCGTGTTGACGGCGGCGGCGGGATTCATCGCGCAGGCGAA
GGGGGGGGAGCTCGCGGGGGCGGCCGTCACTTTGGCGGTGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGTTGAACGGCGTGGGTGGACACGAC
CATACTCATTTAGTCCACGGTTGCCGTGGTTGCGATGTGGTATTTGTGTT
CGTGTTGTTGCTGTCGTCGTCGCCACTACTGCTGTTGTGCTGCGTTTCTT
GCATTCTAAAATACGTGTCCGACCTCTCTTCCTTCCTCCAGTACCTCTCC
GCATTCCGCACTGGTCCAACGGACGCGTTAGAGACGACCGACTTCCGTGT
CGTTACAGGCTCTTGTCAGTTGTATGTGATATACCGTCACATTTTTGGCC
TTCACGTGGCGGTACCCTCAACAGCGAAATACCCTCGACACCTAAATAGT
TTGGCACCAATGCACCCCGACATTGCGGTATACCACCGCTATGTCGGACG
CACCCCATCATGGCCGTAGTATGCCGCTACATCGGACACTTTGCCACTGT
ACTTGCGGAGCACCCCGCCTGCTGTGGACGCGCACAAACACGAAAATCAC
ACCGAGTTGCAGCCACCTCCCACCTCTTCACACATCATGCCATGCGCGGT
CGGAGAGTTGTGCCAACTCCCATGCAACGAAATTGATAGTCCCCAAGTTA
CGTAGTCTGTGCCTATCCTTCCCTCCGTGCCTTTCCTTTCCTCTCTTGTA
TTTAGAGTAGTGTTTTTCCCGGTCCTTTGTCTTTTTTTTTGGGTATTTTT
GACTACCTCGTATCACTACAGCCGGTATCCACATTGTGCCATATTATGGT
ATTCGATTTTGGGGTCTTAGATGATGGTCATATGCCCTCTTTTGCGGAAG
TCTAACCCTGACTTGTCCAGTGTTTCAAAACCTCCTCTGGGTTCTAGAGG
CTTCGTGAGCGGATACAGCAGTACTTCTCGATGAAGGCATGAAGCAACAA
TGAAGGGGAGGCATGGCGTCATCGATAGGAGCAGTACTGCTGCGGTATGC
CTTGTGTGAAGAGCTACTGCCGCTGCTGCTGTAACGTGATACTTTCATCA
CGTGTGTGGCGCTTTCATCTGACAGCGACAACCGAATCGCTATTATTCCT
CAACGGCGGTATAGAATGTCGCTCTCGATGAAAAACGGTACTCATCTGAG
TAGCGGCACCACCTCCCGCTAGCCACCTGGTACCGCTATACCGGAACCCT
TCCTGCTGTCTGTTGTACCAGGGTTCGTTTCTTCCGAACAAAGCAAGTTG
CGCCATCTGCTTGGGAGTGTTGAAGTGTCACGCGGACGTTTTTGGCCACT
TGAATGTTCTCCGACGATAGTATCTGACGTGCTTTGTCTCGTGCTTGGTT
GTAGACGGGACCGCTGGGTTTCCTCAAGGTGGCGGCTTTGCCTGATCAGG
AGGAGCTCGAGGCGATTGCTGGTGAGACCCCGGCACCCCGTATTTCGCTG
TCTGCCCCCCCCCGCCCCCCCCATCCCTGACCCCTTCGCCAAAACATGAG
CATGGAGTTTCACTTGCAAGATCGAGATGCGGCAATCAACCGGCTCATGC
CGCACAGCAGCTGCTGCTGCAGTAGTAGTATGATAAGAGGAAGGCGATCT
TATGTGAGCTAAACCACGGGCGTAATCGTTCCTGAATCATTTCTTGAGGA
GAGCGAGGTTGCAGGCAATGAGTGTATGGCGGAGAGCGCTGCATGGATGC
ATGCAAAAGCGGAAGTCACAAGGGTATGAAGCAGTCGGCATGGTCTCTTG
TCGCAGCAGGTTTTGCAAGAGTACGCGAAGTTGGAGCCACTGTACGGGAT
ATGTGCACGCGTGTGGTTTGTGAGATGGACAGAGACGCGAGCCGAGGAAT
GGTTGGTCACAGCCCCCCCCCCCCCTCCTCGGTTTAGCTGGTGGCGGCAA
TTTGCACAAGGTGGTTTTCTAAAACTTGCCCTGGTGTTCAATAACCCCCC
CCCCCCCACCCCCCATGTTTGATGCGTGTCAACGCAGCCAGCAAGGCCCC
GCCTTTGTCGATGGTTATCAACACCATGGAGCTGTCGGACCGCCAGACCC
CTGCCGCTGTGGTGCTGAGCACGTCCATCAAGGCACGGCAGGGCCGCGAG
GGCACTCTGCGCAACCTTTTGGAGAGCCTTGTGAAGGAGACGGTGGAGAA
CGAGAAGGAGCTCGTGTTCACCTGCACTGTCAACCAGGCACGACACTCAT
GACTGATATTTTCTCGTAGAGGGTACCTCGTATTTCAACATACTTCGTAT
TCGCCATGCTCCCTTTGGTGGATCGGTACTACGGCAGTACCGCTGCTGTT
GCTGTGTTTTTAGAACTTCGTTGTTCTGGGCCATGTGTAACCTCATGTGT
TGCGAATGCACGCGCGTATGACATGCAAATATCTATCTTTGTGAGCATTT
TTTTACGTTGGGCTGTGCAAGTGTGAGAGCGTTCGTCTAGACACGCACAA
GAACATAGTGCCCGAGGCTGTTTCATGTTTCGAAAAATGGTTGAATGCAC
CAAAATCATGGAGGTGCCGTCGAAAGTCTTGGAAGCTCCTTTCCTTGCAT
TATTAGCCGTTGGGTCTTCAATGTAGCGCCAGGCCCTTGTCGGCACACAG
ACGACAGCTGTAGTTAAGAGTCGAAAACAGAGAGGGCGTGGACACTCCCG
CCTATGCTGTTGCTGTTTTACTAAATCGTGGTGCTCCCGCTTGTCCCTGT
GTGCACACGCCTCTCTTGTTTTTGTCGATACCAGGATCCCGAGGACCGCA
CGACGTTCTTCATGCTGCAGCGCTTCCCCAGCCCCGAGGCTATGTCTCGC
TACCAGAACACGGACACCTTCCAGGCATTTACGGATGTAAGTGTGTGAGA
CCTTTTTTTTCTGTGGTGCGCTTCTCGTAAGATTTGAGCTTTCACATTTC
GCTCATGACGGGAAATCCAGATCAATGTATCTACGGATGTAGGGAACTGC
GTTGTGTGCGTTTGTGCGTGGCGTGTACGCACAAGGGCTGTCACTGTTTA
TTCAGGGAAGAGCGCTGCTCCTGGTTTCTTGTCGCGGGGAGAACTTTCGG
TCAACTACGCGGAGCTGGAGCAGAAATCGCATGTCTCTGATAATAATTGA
TGAGGCAACTCTCCGCCTCCTCCCTTGATGTGTGATAAGCATGAAACTCG
AACGCAAAGTCGTGCTCGTGCTGTGCTTTTGAATACCCGCCACCCCCCCT
CCCGCCGCCTCTGTTTTTTTTTCCCCATATGATTCGCTCTTTTATTTTCG
TCGCTGCGACAACAACGTCTTCATTTTTTCGTTGGTCAGGGTGCCGAGGA
GTGCATCGCGGAGCCGATGGGGCTTTACATGGTGAACGAACGGTCAGGCA
AGCTTGGCGAGCCCGTTCACCCCTTCGGACCCGGAGGAGAGGGGGGCCGG
GACGACGCCATCTATTCTTCCCCAGCAAACTTGCAGGTAAAGGAGTGGCG
GGGGGGGGGGTATCTTTATCGCGCAATCGTTGCGCTCGATGGTGTTCATG
GCATGGCAGTACCCATATTTCACGTCCATGCACTCAATCGCCGGTTCTAA
AATAAACACACTTTAGAAGTTTACTGACCTACCTCTGGAGATACCAGGGC
TGAAGTTTCGCGAATGCTTCTTAAAAGTAAAAAAAAAAAAAATGTCTCAG
CGGCGAGTTCGGTCCCATGTTCTGTGCGCAACGTTGAGATTTTTCGTCAC
GACTAAAGAAAAGTGCGGCTCACAAGCAACGGATGGACTTGAGCAATTGT
GTGGGGAAGGCTGGTGCTCCTGTACCTTGCGTAAAAAGGCCTAGACTTTT
GCCTCGCATTTGGTATTTGCATGATATAATGTTCGTTTTTTTTTGCGCCT
TCCATGATTCGTTCACAACGTAACCCGTTGGAACATATCCACGAATTATT
GCTTCAGGAATACTGTAAAATAACTTCGATCCCCGTTTCATGCAGACGAT
ATAAGGAATCCCTAAAGAAGAAGAAATCCCCTCGTGACCGCAGCTGTGCA
ATGGGTAGCTTCCCTCTTACGCGAAGTTTTATCACTGCTATATACCTGCA
GAGTTATTCAAAAATGATTTCTCTATCATATACGTCGAAGTAGTATTTTT
CTTTTCTGTTGGTGGCGTTGAACTCTCGCTGTATACACGGACTTTCCGAG
CGTCCTAGCTCCTGCCTCGGGAAGGCAGCAAAACGCCTCTTTTTGAGTCT
TATCTTGGGGCATGAGGAAAATGGTTGGGGCTGCTTTTGCGTGTTTATTT
TTTCATTTTCTGAGAGTGGAGTTAGTCGCACCGTGCGCTTCTCCACCTTG
GAGATGCGACGCCTTCAGTAGCCATATTTTGGCATCTTTTGAAAGCAACG
AAAGAAAAGCGTCGTACAGAGAATGGAAGACGCGAAAAACGGAAAAATAG
TCAACTTTCGTTTTGTGTCAAGTCTCTTTGCACCTAGAACGTTTTACCGC
TATACGGGTTGATGTGATTTCTAAGGCAGTGGACTTGGGACTCAAAATGA
AACTCTCCTGCACCCCCCCTGTCCCGCGAAACAGGGTTCGCTCGTGCCTG
GCGCTGAGAGGTGAGCGTGCCAGATCGGACTGGAAGCATGGCGTCTCCTG
TGTTGAAGATGGCGGACACCCTCCCTTCTTTTTTCCTACGTCTGCAGACA
GGGTGGTCTCTGTGCGAAAAGTCCTCTCCTTCGCGGATCTCCCACCTCTT
GACATTCATCCACTGGGTTGTATTTCGGCCATCCCTACGTCTTATGTTCC
TGACTGGACCGTCGTGATGTGGTGACGTACCCCACCCACCCACCACCCCG
CTGATGATGATCGAAATGGACGCCTGCGAAACCCGTTGTGCGATATTGAG
GGCGAGTGCGGCGGGTGATGAAAGATGGGATTGCCTTGAGCGTTTTGCTA
AGCACTGGATGAGCGTGAGGGCGGATCAAATGCGGCGATACGTGTTTCGC
TCGCCAACGTTTTGGGCGGCCGTCCGAGTGGTGGCGGCGGTGGCAACGTT
CAATATGTTGCCGTGTACCAGCGAGCTGCTTGATACTCCATGTTGAGTTT
TGTTTTTGTTCAGTGTCTGCCCGGCTTGCGTATCAAAGTATACGTCGGAA
TAATATTTGTGGGGGGGGGGGGCTGTCTAGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:725636..732667-

>mRNA_P-littoralis_Contig17.168.2 ID=mRNA_P-littoralis_Contig17.168.2|Name=mRNA_P-littoralis_Contig17.168.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1050bp|location=Sequence derived from alignment at P-littoralis_Contig17:725636..732667- (Pylaiella littoralis U1_48)
ATGTCCGCGATGAGGAAGATTTGCTTGCTGCTCCTGGCCGCGTCGGCTGC
CGTGCCTGCCTCGGCCTTCATGGGACCGCTGCCGCTTACGAAACAAACCG
CGAGGACCCAGCAGCGATGGGCCGAGGGGACTCGATCAGCGACGGAATGC
CAAGGACGGCGGCAACGTTCTTCGGTGCCGAACATGGCCGCCACCGCCGG
GATGGGGGGCGACGCGATGTTGCCCGAGGAGGAAACGGACATTTTTGCTT
TGATCCGGCCCTTGACAGAGGGACCGGTTTTCATCGGCCTTCAGGCGGTG
TTTGTTATCGCTCTATTAGGGCTCGTGGACGCAGGGTTTTCCGGGGACTG
GCAGGCGAGAGGCCTCCTGAGTGACGCGGCCGCGGCCACGGCACGAACGG
CGTGTCTCACCGCGGGAGCGGCGCACGTCGTGTTGACGGCGGCGGCGGGA
TTCATCGCGCAGGCGAAGGGGGGGGAGCTCGCGGGGGCGGCCGTCACTTT
GGCGACGGGACCGCTGGGTTTCCTCAAGGTGGCGGCTTTGCCTGATCAGG
AGGAGCTCGAGGCGATTGCTGCCAGCAAGGCCCCGCCTTTGTCGATGGTT
ATCAACACCATGGAGCTGTCGGACCGCCAGACCCCTGCCGCTGTGGTGCT
GAGCACGTCCATCAAGGCACGGCAGGGCCGCGAGGGCACTCTGCGCAACC
TTTTGGAGAGCCTTGTGAAGGAGACGGTGGAGAACGAGAAGGAGCTCGTG
TTCACCTGCACTGTCAACCAGGATCCCGAGGACCGCACGACGTTCTTCAT
GCTGCAGCGCTTCCCCAGCCCCGAGGCTATGTCTCGCTACCAGAACACGG
ACACCTTCCAGGCATTTACGGATGGTGCCGAGGAGTGCATCGCGGAGCCG
ATGGGGCTTTACATGGTGAACGAACGGTCAGGCAAGCTTGGCGAGCCCGT
TCACCCCTTCGGACCCGGAGGAGAGGGGGGCCGGGACGACGCCATCTATT
CTTCCCCAGCAAACTTGCAGGGTTCGCTCGTGCCTGGCGCTGAGAGGTGA
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