mRNA_P-littoralis_Contig17.115.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.115.1
Unique NamemRNA_P-littoralis_Contig17.115.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig17.115.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 6.500e-25
Identity = 47/62 (75.81%), Postives = 54/62 (87.10%), Query Frame = 1
Query:    4 NLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPR 189
            +L+EKTT+GD TWKKHFITE+SWTDIRV ILGFVSMCRYLFE+DSRFKVS  R  P ++N R
Sbjct:  594 SLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPHFINQR 655          
BLAST of mRNA_P-littoralis_Contig17.115.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.210e-18
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 CNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPR 189
             +LE + T+GD  WK HFIT++SWTDIRV ILG VSMCRYLFE DSRFK+    D P ++N R
Sbjct:   80 ASLEARPTLGD--WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLSDVPHFINLR 140          
BLAST of mRNA_P-littoralis_Contig17.115.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.760e-18
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 CNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPRH 192
             +LE + T+GD  WK HFIT++SWTDIRV ILG VSMCRY+FE+DS FK+    D P ++N R+
Sbjct:  470 ASLEARPTLGDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLSDVPHFINLRY 533          
BLAST of mRNA_P-littoralis_Contig17.115.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.890e-13
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   40 WKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKV-SRPRDTPRYVNPRHHCQ 201
            WKKHFIT  SW D+R+SILGFVSMCRYLFED  RF++ S   +  R+++PR+  Q
Sbjct:  125 WKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQ 179          
BLAST of mRNA_P-littoralis_Contig17.115.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.300e-9
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1
Query:   28 GDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 135
            G   W  HFIT+YSWTD+R +ILGFV+MCRY+F+D+
Sbjct:  524 GPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDE 559          
BLAST of mRNA_P-littoralis_Contig17.115.1 vs. uniprot
Match: A0A6H5JNK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK0_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.130e-7
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1
Query:    1 CNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVS 108
             +LE + T+GD TW+ HFIT++SWTDI+V ILG V+
Sbjct:   27 ASLEARPTLGDGTWEAHFITDHSWTDIQVCILGTVA 62          
BLAST of mRNA_P-littoralis_Contig17.115.1 vs. uniprot
Match: A0A6H5KH17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH17_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 5.160e-5
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 1
Query:    1 CNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFV 105
             +LE + T+G   WK +FIT++SWTDIRV ILG V
Sbjct:   67 ASLEARPTLGGRAWKAYFITDHSWTDIRVCILGTV 101          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE6.500e-2575.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE2.210e-1861.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE2.760e-1857.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE4.890e-1360.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE3.300e-963.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNK0_9PHAE2.130e-758.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH17_9PHAE5.160e-557.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:534747..534948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size203
Hectar predicted targeting categoryother localisation
Exons1
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789818.2963674-CDS-P-littoralis_Contig17:534746..5349471680789818.2963674-CDS-P-littoralis_Contig17:534746..534947Pylaiella littoralis U1_48CDSP-littoralis_Contig17 534747..534947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.115.1prot_P-littoralis_Contig17.115.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 534747..534947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.115.1

>prot_P-littoralis_Contig17.115.1 ID=prot_P-littoralis_Contig17.115.1|Name=mRNA_P-littoralis_Contig17.115.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=67bp
CNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKV
SRPRDTPRYVNPRHHCQ
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mRNA from alignment at P-littoralis_Contig17:534747..534948+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.115.1 ID=mRNA_P-littoralis_Contig17.115.1|Name=mRNA_P-littoralis_Contig17.115.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=202bp|location=Sequence derived from alignment at P-littoralis_Contig17:534747..534948+ (Pylaiella littoralis U1_48)
TGCAATCTGGAGGAGAAGACGACGGTGGGCGACGTCACCTGGAAGAAGCA CTTCATCACGGAGTACTCGTGGACCGACATCCGGGTGTCCATCCTTGGCT TCGTCAGTATGTGCCGATACTTGTTCGAGGATGATTCGAGGTTCAAGGTC TCCCGCCCGCGCGACACGCCCCGCTACGTCAACCCGCGGCACCATTGCCA GG
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:534747..534948+

>mRNA_P-littoralis_Contig17.115.1 ID=mRNA_P-littoralis_Contig17.115.1|Name=mRNA_P-littoralis_Contig17.115.1|organism=Pylaiella littoralis U1_48|type=CDS|length=201bp|location=Sequence derived from alignment at P-littoralis_Contig17:534747..534948+ (Pylaiella littoralis U1_48)
TGCAATCTGGAGGAGAAGACGACGGTGGGCGACGTCACCTGGAAGAAGCA
CTTCATCACGGAGTACTCGTGGACCGACATCCGGGTGTCCATCCTTGGCT
TCGTCAGTATGTGCCGATACTTGTTCGAGGATGATTCGAGGTTCAAGGTC
TCCCGCCCGCGCGACACGCCCCGCTACGTCAACCCGCGGCACCATTGCCA
G
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