mRNA_P-littoralis_Contig17.111.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.111.1
Unique NamemRNA_P-littoralis_Contig17.111.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:528152..529842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size582
Hectar predicted targeting categoryother localisation
Exons2
Cds size582
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789812.9041383-CDS-P-littoralis_Contig17:528151..5285511680789812.9041383-CDS-P-littoralis_Contig17:528151..528551Pylaiella littoralis U1_48CDSP-littoralis_Contig17 528152..528551 +
1680789812.9196546-CDS-P-littoralis_Contig17:529660..5298421680789812.9196546-CDS-P-littoralis_Contig17:529660..529842Pylaiella littoralis U1_48CDSP-littoralis_Contig17 529661..529842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.111.1prot_P-littoralis_Contig17.111.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 528152..529842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.111.1

>prot_P-littoralis_Contig17.111.1 ID=prot_P-littoralis_Contig17.111.1|Name=mRNA_P-littoralis_Contig17.111.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=194bp
GRSTPPRKPHSPAILCQRGSAAQLATRRLFFCREGHLRLGTHGARCECTM
AGMVGVSSALVCSAGAGSGAGYSAASATSGTTAAAAAAATAADVSVGSGT
TASTAAAAASATSAAVLALLLYCCAADPTKVLTGSSSRPLRHAAAGRGLI
AASWQRLTQGGVGGDAGGAVNEECATHIQPPHPSSLLTTHAHTR
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mRNA from alignment at P-littoralis_Contig17:528152..529842+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.111.1 ID=mRNA_P-littoralis_Contig17.111.1|Name=mRNA_P-littoralis_Contig17.111.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1691bp|location=Sequence derived from alignment at P-littoralis_Contig17:528152..529842+ (Pylaiella littoralis U1_48)
GGTAGGTCCACACCCCCACGGAAACCCCACAGTCCCGCCATTCTCTGTCA
GCGCGGGAGCGCGGCACAACTCGCCACACGCCGCCTGTTCTTCTGTCGGG
AAGGGCACCTACGTCTCGGCACCCACGGCGCAAGGTGTGAGTGCACGATG
GCAGGAATGGTGGGGGTGTCGTCTGCGCTCGTTTGCAGTGCTGGTGCTGG
TAGTGGTGCAGGTTATTCTGCTGCCTCCGCCACATCTGGTACTACTGCTG
CTGCTGCTGCTGCTGCTACGGCTGCTGATGTTTCTGTTGGATCTGGTACT
ACTGCGTCAACGGCTGCTGCTGCTGCTTCTGCTACTTCTGCTGCTGTACT
CGCACTGCTGCTGTACTGCTGTGCTGCTGATCCGACGAAGGTCCTGACGG
GTGAGTTGACAGTCGGCTGGATGCTGCATGTTGTTGTTTCCATTGCTGTG
ATATTACTCTGTTTATGTTGCTAATGCTGATGCTGTGTTCTTGCGTTCGT
TTGATCGAGTAAAACTCACCCCGTACGTCTCCCTCCTTCACATGCTGCAC
AGGTGTTCACGAGTGAGATGACATTCGACTGGTTGTTGTTTCCACGTTGG
TTGCATTGCTGTTGCTGTTGCCGCTGTGCTGGTACTGTAGTGTTTGATGT
TAAGTAAAACTGGCCCCATACTTCTGGCTTTGCATTCAGCCAGCTCGAGA
AAAAGCTGGAGTCGCAGTCACACTGGGTAGGCCCGAAACGGTCGGATAGG
GAGACGGTAAACATGTTCAATTTATGAACGTGACATCACTGATGTCAGGC
GGGGCATCATCAAGTCGTACCTTATGTTGAGGAGGGCGTGGTCTGAAATG
TGGGCGAAGGAGATCTGGATTAACATCGCATAGCCTGGGAGGTAACCATC
ATACATAATGGATATTTGGTGCGAGGTGCAGTTTGCCCGTGTAAGGGTTT
TGTGTGGTGAGGTGTGGGCGCTGGGCCGTGTGATATGGTGTGGGCTCTGG
GTCGTGGCACTGGGCCGTATACTTGAGAAAGGCTATGGGCCTGGAGTCTG
GAGGCCCTGGGCCTGTAGTTTGGGAAGGCGCTGGGCCGAACTTGATAGAT
TGATCAGAAGCACGGAGGCAACACGGTCGCTCGGGTGGCGCACTCAAAGC
TTCAAGAAGAAGCGACCTACGACATAATACGAAACACGTAACCTCCCGCA
TCGATCCACAATGTTCCTGAACAATGATCTCCGTAGAACTGCAACCAATG
AACAAACGATCGCATGCTGCTGCGAGTACATCCAACACATCACATGGCTA
GCGGGATCGCTCTGAACGGAACCCCGTTACAGTGCCCTGTGCAAAATGTG
TCTCTTATCTGCAACCTCCAACGCCGGTTTGGGCCCGGCAATCTTGCACT
GTGCCCTTTACGTTGCGGGTGCGAGGCACTGTTTTTCGAAGATGACGTGA
TTACTTTTCCTTACTAGTCGTCCCCTATGATATTCTCCGTCGTCATCCCA
CTTTTTCAGGATCATCCTCCCGGCCGCTGCGCCATGCAGCTGCAGGAAGG
GGACTCATCGCAGCGTCATGGCAGCGCCTTACCCAAGGCGGCGTTGGGGG
GGATGCAGGGGGTGCAGTGAATGAAGAGTGCGCAACACACATCCAGCCTC
CGCACCCGTCCTCGCTTTTAACAACACACGCACACACACGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:528152..529842+

>mRNA_P-littoralis_Contig17.111.1 ID=mRNA_P-littoralis_Contig17.111.1|Name=mRNA_P-littoralis_Contig17.111.1|organism=Pylaiella littoralis U1_48|type=CDS|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig17:528152..529842+ (Pylaiella littoralis U1_48)
GGTAGGTCCACACCCCCACGGAAACCCCACAGTCCCGCCATTCTCTGTCA
GCGCGGGAGCGCGGCACAACTCGCCACACGCCGCCTGTTCTTCTGTCGGG
AAGGGCACCTACGTCTCGGCACCCACGGCGCAAGGTGTGAGTGCACGATG
GCAGGAATGGTGGGGGTGTCGTCTGCGCTCGTTTGCAGTGCTGGTGCTGG
TAGTGGTGCAGGTTATTCTGCTGCCTCCGCCACATCTGGTACTACTGCTG
CTGCTGCTGCTGCTGCTACGGCTGCTGATGTTTCTGTTGGATCTGGTACT
ACTGCGTCAACGGCTGCTGCTGCTGCTTCTGCTACTTCTGCTGCTGTACT
CGCACTGCTGCTGTACTGCTGTGCTGCTGATCCGACGAAGGTCCTGACGG
GATCATCCTCCCGGCCGCTGCGCCATGCAGCTGCAGGAAGGGGACTCATC
GCAGCGTCATGGCAGCGCCTTACCCAAGGCGGCGTTGGGGGGGATGCAGG
GGGTGCAGTGAATGAAGAGTGCGCAACACACATCCAGCCTCCGCACCCGT
CCTCGCTTTTAACAACACACGCACACACACGT
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