mRNA_P-littoralis_Contig169.94.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig169.94.1
Unique NamemRNA_P-littoralis_Contig169.94.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig169.94.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 6.510e-20
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = 3 
Query:  219 SKENSKHLAMVQNAALYYQCLVTKRKIGTTNTEGRDAHAKQNYLDHTVPGFFAWWNKSCNLPIPTWLTPKLMGQSTLTDQTNRLYTV 479
            +K+  KHL+++QNAA YYQCLVTKR+ GT +T+ RDAHA+ NY + TVP F  WW        P+WLT  LMG +T  D  +   TV
Sbjct:   24 TKQTPKHLSLIQNAAAYYQCLVTKREAGTMSTQQRDAHARTNYKNFTVPSFLCWWKTVVIQTPPSWLTQDLMGMTTGNDSGSTTPTV 110
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BLAST of mRNA_P-littoralis_Contig169.94.1 vs. uniprot
Match: A0A6H5KNK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK2_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 2.680e-5
Identity = 20/33 (60.61%), Postives = 28/33 (84.85%), Query Frame = 3 
Query:  219 SKENSKHLAMVQNAALYYQCLVTKRKIGTTNTE 317
            +K+  KHL+++QNAA YYQCLVTKR+ GT +T+
Sbjct:   24 TKQTPKHLSLIQNAAAYYQCLVTKREAGTMSTQ 56
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig169.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE6.510e-2050.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNK2_9PHAE2.680e-560.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig169contigP-littoralis_Contig169:379051..380153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size518
Hectar predicted targeting categoryother localisation
Exons2
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789812.3594763-CDS-P-littoralis_Contig169:379050..3791091680789812.3594763-CDS-P-littoralis_Contig169:379050..379109Pylaiella littoralis U1_48CDSP-littoralis_Contig169 379051..379109 -
1680789812.37326-CDS-P-littoralis_Contig169:379694..3799621680789812.37326-CDS-P-littoralis_Contig169:379694..379962Pylaiella littoralis U1_48CDSP-littoralis_Contig169 379695..379962 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789812.3858757-UTR-P-littoralis_Contig169:379962..3801531680789812.3858757-UTR-P-littoralis_Contig169:379962..380153Pylaiella littoralis U1_48UTRP-littoralis_Contig169 379963..380153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig169.94.1prot_P-littoralis_Contig169.94.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig169 379051..379962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig169.94.1

>prot_P-littoralis_Contig169.94.1 ID=prot_P-littoralis_Contig169.94.1|Name=mRNA_P-littoralis_Contig169.94.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
MLLTTIGNCSKENSKHLAMVQNAALYYQCLVTKRKIGTTNTEGRDAHAKQ
NYLDHTVPGFFAWWNKSCNLPIPTWLTPKLMGQSTLTDQTNRLYTVDGAI
WSNYSEAGK
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mRNA from alignment at P-littoralis_Contig169:379051..380153-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig169.94.1 ID=mRNA_P-littoralis_Contig169.94.1|Name=mRNA_P-littoralis_Contig169.94.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1103bp|location=Sequence derived from alignment at P-littoralis_Contig169:379051..380153- (Pylaiella littoralis U1_48)
CAAAAGTCGAGTTTTTAGGTAGCCGATAGGGGGTGCGAAGAAGTGCCGAA
TATGCACGGAGCCTCTCCAACTGCATCCAGCCCAGTCGCCTTCGCTGCTG
TGTATGCACAAGCCGGCAACACGCGCACGCCCTCTCTCAGCAGCATGGAG
GAAATTTGTCCTCTCTATCCCTGGTCACTGATCTCTCGGCTATGCTGCTC
ACAACCATCGGGAATTGTTCCAAGGAGAACTCGAAGCATCTAGCGATGGT
TCAAAACGCGGCTTTGTACTATCAGTGCCTCGTGACGAAGCGCAAGATCG
GCACCACCAACACCGAAGGACGGGATGCACACGCAAAGCAGAACTACCTC
GACCACACCGTTCCTGGTTTCTTTGCCTGGTGGAATAAGTCCTGCAACCT
GCCGATTCCTACGTGGCTGACGCCGAAGCTCATGGGCCAGAGCACGCTGA
CTGACCAAAGTGAGATACGGAAATATTTGTAGGGTGGAACAGCTGCAGCA
GCGGCACAGCTGCTGCAGCGGCAGCAGTAACAGCAGTACCGGTACCAGTG
TTTGAGTGCCATAAACTCTCAAGCAGGCTCACACCAGCTATTTTTCGCCT
CTGTGCTGTTTCAGCCTTCGATTGCGAGCTCATCTGCTGGCACATGCAAT
AGGGTTTGCTGCACACATCATATCTCGGAATAACTTTGTCGAGAAAGAAA
AAGAAACAACAGCAGTACTGCTGTATCTGATGCGTATAATTTGCTCGTTC
CCGAGGACGGCAGTACAACAGCAGCAGTATATACAACACGCCTCTGCATC
ACGAACGACGCACATCCGACGAATCGTGTGCATTGTGCGGCAACACTCGT
CTACCTGATTTAGTATTAATTATTTATATAAAGCTTTGTTTGTATTGCTG
CCCAGTGCTTTGGCTTGTTCATAGCTTGAAGCCCTTTGCCGAGTGAGACG
CTCCAAACCATGCCGACAAATCAGTGCTTGACGAATAGCCTTCCATCCCG
TTGGCCTCCCCGTTGCGTCCCGTCACGTTGTTGCCCCCGTGCAGCTAATA
GGCTGTACACAGTTGATGGTGCTATCTGGAGCAATTACTCGGAAGCTGGC
AAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig169:379051..380153-

>mRNA_P-littoralis_Contig169.94.1 ID=mRNA_P-littoralis_Contig169.94.1|Name=mRNA_P-littoralis_Contig169.94.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig169:379051..380153- (Pylaiella littoralis U1_48)
ATGCTGCTCACAACCATCGGGAATTGTTCCAAGGAGAACTCGAAGCATCT
AGCGATGGTTCAAAACGCGGCTTTGTACTATCAGTGCCTCGTGACGAAGC
GCAAGATCGGCACCACCAACACCGAAGGACGGGATGCACACGCAAAGCAG
AACTACCTCGACCACACCGTTCCTGGTTTCTTTGCCTGGTGGAATAAGTC
CTGCAACCTGCCGATTCCTACGTGGCTGACGCCGAAGCTCATGGGCCAGA
GCACGCTGACTGACCAAACTAATAGGCTGTACACAGTTGATGGTGCTATC
TGGAGCAATTACTCGGAAGCTGGCAAA
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