mRNA_P-littoralis_Contig169.52.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: A0A6H5KA18_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA18_9PHAE) HSP 1 Score: 292 bits (748), Expect = 1.280e-91 Identity = 157/218 (72.02%), Postives = 177/218 (81.19%), Query Frame = 1
Query: 7 PLPQPPAPLRLLLTGTAGTGKTVVIPETARRVEKQRFILMAPTGNAACAIGGMTIHSGFRI-LVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLGPEQAA-RDTFLRIAEGTQTRSGWILLQQ 654
PLP PP+PLRLLLTGTAGTGKTVVI E R V +QRFILMAPTGNAACAIGGMTIH GFRI +V + RSS+PS+M+E A +LQ+RM VDFI VDEFSMVGQ++LGL+SARGKQAV GR G D DVFGGLSIILVGD AQLPPVGA +W PS+ GLS+QG QAWL+MNNAVELT+VMRQ GPEQAA RDT LRIAEG QT W +L++
Sbjct: 472 PLPAPPSPLRLLLTGTAGTGKTVVIREMVRLVGQQRFILMAPTGNAACAIGGMTIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDILGLISARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTRVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKR 689
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: A0A6H5K558_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K558_9PHAE) HSP 1 Score: 297 bits (760), Expect = 6.950e-91 Identity = 160/218 (73.39%), Postives = 177/218 (81.19%), Query Frame = 1
Query: 7 PLPQPPAPLRLLLTGTAGTGKTVVIPETARRVEKQRFILMAPTGNAACAIGGMTIHSGFRI-LVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLGPEQAA-RDTFLRIAEGTQTRSGWILLQQ 654
PLP PP+PLRLLLTGTAGTGKTVVI E R V +QRFILMAPTGNAACAIGGMTIH GFRI +V + RSS+PS+M+E A +LQ+RM VDFI VDEFSMVGQ+MLGLMSARGKQAV GR G D DVFGGLSIILVGD AQLPPVGA +W PS+ GLS+QG QAWL+MNNAVELTQVMRQ GPEQAA RDT LRIAEG QT W +L++
Sbjct: 354 PLPAPPSPLRLLLTGTAGTGKTVVIREMVRLVGQQRFILMAPTGNAACAIGGMTIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDMLGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKR 571
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: A0A6H5KFJ0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ0_9PHAE) HSP 1 Score: 297 bits (760), Expect = 1.970e-89 Identity = 160/218 (73.39%), Postives = 177/218 (81.19%), Query Frame = 1
Query: 7 PLPQPPAPLRLLLTGTAGTGKTVVIPETARRVEKQRFILMAPTGNAACAIGGMTIHSGFRI-LVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLGPEQAA-RDTFLRIAEGTQTRSGWILLQQ 654
PLP PP+PLRLLLTGTAGTGKTVVI E R V +QRFILMAPTGNAACAIGGMTIH GFRI +V + RSS+PS+M+E A +LQ+RM VDFI VDEFSMVGQ+MLGLMSARGKQAV GR G D DVFGGLSIILVGD AQLPPVGA +W PS+ GLS+QG QAWL+MNNAVELTQVMRQ GPEQAA RDT LRIAEG QT W +L++
Sbjct: 1095 PLPAPPSPLRLLLTGTAGTGKTVVIREMVRLVGQQRFILMAPTGNAACAIGGMTIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDMLGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKR 1312
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: A0A6H5KIQ7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ7_9PHAE) HSP 1 Score: 269 bits (688), Expect = 6.120e-81 Identity = 143/191 (74.87%), Postives = 157/191 (82.20%), Query Frame = 1
Query: 7 PLPQPPAPLRLLLTGTAGTGKTVVIPETARRVEKQRFILMAPTGNAACAIGGMTIHSGFRI-LVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLGP 576
PLP PP+PLRLLLTGTAGTGKTVVI E R V +QRFILMAPTGNAACAIGGMTIH GFRI +V + RSS+PS+M+E A +LQ+RM VDFI VDEFSMVGQ+MLGLMSARGKQAV GR G D DVFGGLSIILVGD AQLPPVGA +W PS+ GLS+QG QAWL+MNNAVELTQVMRQ GP
Sbjct: 783 PLPAPPSPLRLLLTGTAGTGKTVVIREMVRLVGQQRFILMAPTGNAACAIGGMTIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDMLGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGP 973
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: A0A6H5KDM0_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM0_9PHAE) HSP 1 Score: 249 bits (636), Expect = 1.170e-80 Identity = 134/187 (71.66%), Postives = 150/187 (80.21%), Query Frame = 1
Query: 100 VEKQRFILMAPTGNAACAIGGMTIHSGFRI-LVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLGPEQAA-RDTFLRIAEGTQTRSGWILLQQ 654
V +QRFILMAPTGNAACAIGGMTIH GFRI +V + RSS+PS+M+E A +LQ+RM VDFI VDEFSMVGQ+MLGLMSARGKQAV GR G D DVFGGLSIILVGD A LPPVGA +W PS+ GLS+QG QAWL+MNNAVELTQVMRQ GPEQAA RDT LRIAEG QT W +L++
Sbjct: 5 VGQQRFILMAPTGNAACAIGGMTIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDMLGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAHLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKR 191
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: A0A6H5KDL6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL6_9PHAE) HSP 1 Score: 211 bits (536), Expect = 6.590e-62 Identity = 114/165 (69.09%), Postives = 131/165 (79.39%), Query Frame = 1
Query: 166 TIHSGFRI-LVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLGPEQAA-RDTFLRIAEGTQTRSGWILLQQ 654
TIH GFRI +V + RSS+PS+M+E A +LQ+RM VDFI VDEFSMVGQ++LGLMSARGKQAV GR G D DVFGGLSIILVGD AQLPPVGA+ +W PS+ GLS+QG QAWL+MNNAVELTQVMRQ GPEQAA RDT LRIAEG QT W +L++
Sbjct: 3 TIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDILGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGARPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKR 167
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE) HSP 1 Score: 202 bits (514), Expect = 3.150e-56 Identity = 108/196 (55.10%), Postives = 135/196 (68.88%), Query Frame = 1
Query: 67 KTVVIPETARRVEKQRFILMAPTGNAACAIGGMTIHSGFRILVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLGPEQAA-RDTFLRIAEGTQTRSGWILLQ 651
+ + + E R++ +QRF+L+APTGNAACAIGG TIH+G R+ V NR + ++SE A +LQQ++ GVDF+ VDEFSM+GQ+MLG+MS R KQAV GR D HL +FGGL II+VGD QL V MW P S+ LS QG AWL MN AV+LTQVMRQ G QAA R+T LRIAEG T + W L+
Sbjct: 1185 QALAVREMVRQLGRQRFLLLAPTGNAACAIGGETIHTGLRVGVQNRPRGDLGEISESARRDLQQKIQGVDFVLVDEFSMIGQDMLGMMSVRLKQAVEGRRTYWVDDRHLGLFGGLCIIMVGDIIQLLTVAQSPMWTSRPQSSALSGQGLYAWLGMNAAVQLTQVMRQQGAAQAAFRETLLRIAEGEATEADWNTLR 1380
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: UPI00077B041D (ATP-dependent DNA helicase RRM3-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B041D) HSP 1 Score: 118 bits (295), Expect = 1.740e-28 Identity = 83/213 (38.97%), Postives = 119/213 (55.87%), Query Frame = 1
Query: 19 PPAPLRLLLTGTAGTGKTVVIPETARRVEKQRFILMAPTGNAACAIGGMTIHSGFRILVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLG--PEQAA-RDTFLRIAEGTQTRSGWILL 648
P PL L++ G AGTGK+ +I R + + A TG A+ I G TIHS ++ V R + E ++ A + LQ + G+ I +DE+SM+GQ MLG + R +QA G D +VFGGLSIIL GD QLPPV K +++ P+S+ + QG+ A+L NN ++L+ R G PEQ+ RD +R+ G T+ W LL
Sbjct: 11 PKDPLLLIVNGVAGTGKSYLI-NAIRSLLGTSCAVTATTGKASYNINGCTIHSLLKLPVRLRGNKE---LTGQALLRLQNNLKGISCIIIDEYSMLGQTMLGWIDRRCRQAT------GISD---EVFGGLSIILFGDPGQLPPVADKPLYHSKPTSS-VGEQGHLAYLMFNNVIKLSVNQRVQGTNPEQSQFRDLLMRLRTGDCTKQDWKLL 209
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: UPI00106C3E43 (ATP-dependent DNA helicase pfh1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C3E43) HSP 1 Score: 117 bits (293), Expect = 3.480e-28 Identity = 81/213 (38.03%), Postives = 121/213 (56.81%), Query Frame = 1
Query: 28 PLRLLLTGTAGTGKTVVIPETARRVEKQRFILMAPTGNAACAIGGMTIHSGFRILVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDV-FGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLG--PEQAA-RDTFLRIAEGTQTRSGWILLQQ 654
PL ++++GTAGTGKT +I ++V + + I+ A TG AA +IGG T+HS ++ + R ++ + LQ R+ G F+ +DE SM+G +ML + R+R G G DV FGG+S+IL+GD+ QLPPVG + M+ S +S G+ +L ++ V L QVMRQ+G PE A R +R+ +G T W LL Q
Sbjct: 39 PLHMIVSGTAGTGKTYLI-SALKQVLQDQCIVTATTGIAAFSIGGQTLHSAAQLPIREYR-----ELQGDSLQRLQLRLEGKRFLIIDEMSMIGHKMLSWLD--------NRLRAG--TGKEDVPFGGMSVILMGDFGQLPPVGDRPMYIAGNGSV-ISDHGHSMYLTFDHVVILEQVMRQIGEDPEVVAFRSLLMRLRDGQVTEMDWRLLIQ 234
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: A0A6S7IHH9_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IHH9_PARCT) HSP 1 Score: 116 bits (291), Expect = 9.280e-27 Identity = 77/210 (36.67%), Postives = 114/210 (54.29%), Query Frame = 1
Query: 28 PLRLLLTGTAGTGKTVVIPETARRVEKQRFILMAPTGNAACAIGGMTIHSGFRILVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLGP---EQAARDTFLRIAEGTQTRSGWILL 648
PL L++ G AGTGK+ +I R + + + + A TG A+ I G+TIHS ++ + R + + + S LQ+ + G+D+I VDE+SM+GQ G + R KQA G+HD + GG S IL GD QLPPV K +++P PS+ + QGYQ + N V+LT R G +Q RD +R+ G T + W +L
Sbjct: 250 PLFLIIIGEAGTGKSYLI-NAIRNLLQSKCAVTATTGKASFNIRGVTIHSLLKLPIGTRGNKDVTGQS---LCRLQESLNGIDYIIVDEYSMLGQTTFGWIDKRCKQAT------GHHD---RILGGKSFILTGDPGQLPPVADKPLYHPKPSNA-FAEQGYQTYRMFNKVVKLTVNQRVQGASIQQQQFRDLLMRLHVGDSTCNDWEML 445 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig169.52.1 >prot_P-littoralis_Contig169.52.1 ID=prot_P-littoralis_Contig169.52.1|Name=mRNA_P-littoralis_Contig169.52.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=221bp MGPLPQPPAPLRLLLTGTAGTGKTVVIPETARRVEKQRFILMAPTGNAACback to top mRNA from alignment at P-littoralis_Contig169:308430..309239- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig169.52.1 ID=mRNA_P-littoralis_Contig169.52.1|Name=mRNA_P-littoralis_Contig169.52.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=810bp|location=Sequence derived from alignment at P-littoralis_Contig169:308430..309239- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig169:308430..309239- >mRNA_P-littoralis_Contig169.52.1 ID=mRNA_P-littoralis_Contig169.52.1|Name=mRNA_P-littoralis_Contig169.52.1|organism=Pylaiella littoralis U1_48|type=CDS|length=663bp|location=Sequence derived from alignment at P-littoralis_Contig169:308430..309239- (Pylaiella littoralis U1_48)back to top |