mRNA_P-littoralis_Contig169.52.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig169.52.1
Unique NamemRNA_P-littoralis_Contig169.52.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: A0A6H5KA18_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA18_9PHAE)

HSP 1 Score: 292 bits (748), Expect = 1.280e-91
Identity = 157/218 (72.02%), Postives = 177/218 (81.19%), Query Frame = 1
Query:    7 PLPQPPAPLRLLLTGTAGTGKTVVIPETARRVEKQRFILMAPTGNAACAIGGMTIHSGFRI-LVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLGPEQAA-RDTFLRIAEGTQTRSGWILLQQ 654
            PLP PP+PLRLLLTGTAGTGKTVVI E  R V +QRFILMAPTGNAACAIGGMTIH GFRI +V + RSS+PS+M+E A  +LQ+RM  VDFI VDEFSMVGQ++LGL+SARGKQAV GR   G  D   DVFGGLSIILVGD AQLPPVGA  +W   PS+ GLS+QG QAWL+MNNAVELT+VMRQ GPEQAA RDT LRIAEG QT   W +L++
Sbjct:  472 PLPAPPSPLRLLLTGTAGTGKTVVIREMVRLVGQQRFILMAPTGNAACAIGGMTIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDILGLISARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTRVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKR 689          
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: A0A6H5K558_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K558_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 6.950e-91
Identity = 160/218 (73.39%), Postives = 177/218 (81.19%), Query Frame = 1
Query:    7 PLPQPPAPLRLLLTGTAGTGKTVVIPETARRVEKQRFILMAPTGNAACAIGGMTIHSGFRI-LVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLGPEQAA-RDTFLRIAEGTQTRSGWILLQQ 654
            PLP PP+PLRLLLTGTAGTGKTVVI E  R V +QRFILMAPTGNAACAIGGMTIH GFRI +V + RSS+PS+M+E A  +LQ+RM  VDFI VDEFSMVGQ+MLGLMSARGKQAV GR   G  D   DVFGGLSIILVGD AQLPPVGA  +W   PS+ GLS+QG QAWL+MNNAVELTQVMRQ GPEQAA RDT LRIAEG QT   W +L++
Sbjct:  354 PLPAPPSPLRLLLTGTAGTGKTVVIREMVRLVGQQRFILMAPTGNAACAIGGMTIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDMLGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKR 571          
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: A0A6H5KFJ0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ0_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 1.970e-89
Identity = 160/218 (73.39%), Postives = 177/218 (81.19%), Query Frame = 1
Query:    7 PLPQPPAPLRLLLTGTAGTGKTVVIPETARRVEKQRFILMAPTGNAACAIGGMTIHSGFRI-LVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLGPEQAA-RDTFLRIAEGTQTRSGWILLQQ 654
            PLP PP+PLRLLLTGTAGTGKTVVI E  R V +QRFILMAPTGNAACAIGGMTIH GFRI +V + RSS+PS+M+E A  +LQ+RM  VDFI VDEFSMVGQ+MLGLMSARGKQAV GR   G  D   DVFGGLSIILVGD AQLPPVGA  +W   PS+ GLS+QG QAWL+MNNAVELTQVMRQ GPEQAA RDT LRIAEG QT   W +L++
Sbjct: 1095 PLPAPPSPLRLLLTGTAGTGKTVVIREMVRLVGQQRFILMAPTGNAACAIGGMTIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDMLGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKR 1312          
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: A0A6H5KIQ7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ7_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 6.120e-81
Identity = 143/191 (74.87%), Postives = 157/191 (82.20%), Query Frame = 1
Query:    7 PLPQPPAPLRLLLTGTAGTGKTVVIPETARRVEKQRFILMAPTGNAACAIGGMTIHSGFRI-LVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLGP 576
            PLP PP+PLRLLLTGTAGTGKTVVI E  R V +QRFILMAPTGNAACAIGGMTIH GFRI +V + RSS+PS+M+E A  +LQ+RM  VDFI VDEFSMVGQ+MLGLMSARGKQAV GR   G  D   DVFGGLSIILVGD AQLPPVGA  +W   PS+ GLS+QG QAWL+MNNAVELTQVMRQ GP
Sbjct:  783 PLPAPPSPLRLLLTGTAGTGKTVVIREMVRLVGQQRFILMAPTGNAACAIGGMTIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDMLGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGP 973          
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: A0A6H5KDM0_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM0_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 1.170e-80
Identity = 134/187 (71.66%), Postives = 150/187 (80.21%), Query Frame = 1
Query:  100 VEKQRFILMAPTGNAACAIGGMTIHSGFRI-LVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLGPEQAA-RDTFLRIAEGTQTRSGWILLQQ 654
            V +QRFILMAPTGNAACAIGGMTIH GFRI +V + RSS+PS+M+E A  +LQ+RM  VDFI VDEFSMVGQ+MLGLMSARGKQAV GR   G  D   DVFGGLSIILVGD A LPPVGA  +W   PS+ GLS+QG QAWL+MNNAVELTQVMRQ GPEQAA RDT LRIAEG QT   W +L++
Sbjct:    5 VGQQRFILMAPTGNAACAIGGMTIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDMLGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAHLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKR 191          
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: A0A6H5KDL6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL6_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 6.590e-62
Identity = 114/165 (69.09%), Postives = 131/165 (79.39%), Query Frame = 1
Query:  166 TIHSGFRI-LVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLGPEQAA-RDTFLRIAEGTQTRSGWILLQQ 654
            TIH GFRI +V + RSS+PS+M+E A  +LQ+RM  VDFI VDEFSMVGQ++LGLMSARGKQAV GR   G  D   DVFGGLSIILVGD AQLPPVGA+ +W   PS+ GLS+QG QAWL+MNNAVELTQVMRQ GPEQAA RDT LRIAEG QT   W +L++
Sbjct:    3 TIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDILGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGARPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKR 167          
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 3.150e-56
Identity = 108/196 (55.10%), Postives = 135/196 (68.88%), Query Frame = 1
Query:   67 KTVVIPETARRVEKQRFILMAPTGNAACAIGGMTIHSGFRILVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLGPEQAA-RDTFLRIAEGTQTRSGWILLQ 651
            + + + E  R++ +QRF+L+APTGNAACAIGG TIH+G R+ V NR   +  ++SE A  +LQQ++ GVDF+ VDEFSM+GQ+MLG+MS R KQAV GR      D HL +FGGL II+VGD  QL  V    MW   P S+ LS QG  AWL MN AV+LTQVMRQ G  QAA R+T LRIAEG  T + W  L+
Sbjct: 1185 QALAVREMVRQLGRQRFLLLAPTGNAACAIGGETIHTGLRVGVQNRPRGDLGEISESARRDLQQKIQGVDFVLVDEFSMIGQDMLGMMSVRLKQAVEGRRTYWVDDRHLGLFGGLCIIMVGDIIQLLTVAQSPMWTSRPQSSALSGQGLYAWLGMNAAVQLTQVMRQQGAAQAAFRETLLRIAEGEATEADWNTLR 1380          
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: UPI00077B041D (ATP-dependent DNA helicase RRM3-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B041D)

HSP 1 Score: 118 bits (295), Expect = 1.740e-28
Identity = 83/213 (38.97%), Postives = 119/213 (55.87%), Query Frame = 1
Query:   19 PPAPLRLLLTGTAGTGKTVVIPETARRVEKQRFILMAPTGNAACAIGGMTIHSGFRILVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLG--PEQAA-RDTFLRIAEGTQTRSGWILL 648
            P  PL L++ G AGTGK+ +I    R +      + A TG A+  I G TIHS  ++ V  R + E   ++  A + LQ  + G+  I +DE+SM+GQ MLG +  R +QA       G  D   +VFGGLSIIL GD  QLPPV  K +++  P+S+ +  QG+ A+L  NN ++L+   R  G  PEQ+  RD  +R+  G  T+  W LL
Sbjct:   11 PKDPLLLIVNGVAGTGKSYLI-NAIRSLLGTSCAVTATTGKASYNINGCTIHSLLKLPVRLRGNKE---LTGQALLRLQNNLKGISCIIIDEYSMLGQTMLGWIDRRCRQAT------GISD---EVFGGLSIILFGDPGQLPPVADKPLYHSKPTSS-VGEQGHLAYLMFNNVIKLSVNQRVQGTNPEQSQFRDLLMRLRTGDCTKQDWKLL 209          
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: UPI00106C3E43 (ATP-dependent DNA helicase pfh1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C3E43)

HSP 1 Score: 117 bits (293), Expect = 3.480e-28
Identity = 81/213 (38.03%), Postives = 121/213 (56.81%), Query Frame = 1
Query:   28 PLRLLLTGTAGTGKTVVIPETARRVEKQRFILMAPTGNAACAIGGMTIHSGFRILVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDV-FGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLG--PEQAA-RDTFLRIAEGTQTRSGWILLQQ 654
            PL ++++GTAGTGKT +I    ++V + + I+ A TG AA +IGG T+HS  ++ +   R     ++   +   LQ R+ G  F+ +DE SM+G +ML  +          R+R G   G  DV FGG+S+IL+GD+ QLPPVG + M+     S  +S  G+  +L  ++ V L QVMRQ+G  PE  A R   +R+ +G  T   W LL Q
Sbjct:   39 PLHMIVSGTAGTGKTYLI-SALKQVLQDQCIVTATTGIAAFSIGGQTLHSAAQLPIREYR-----ELQGDSLQRLQLRLEGKRFLIIDEMSMIGHKMLSWLD--------NRLRAG--TGKEDVPFGGMSVILMGDFGQLPPVGDRPMYIAGNGSV-ISDHGHSMYLTFDHVVILEQVMRQIGEDPEVVAFRSLLMRLRDGQVTEMDWRLLIQ 234          
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Match: A0A6S7IHH9_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IHH9_PARCT)

HSP 1 Score: 116 bits (291), Expect = 9.280e-27
Identity = 77/210 (36.67%), Postives = 114/210 (54.29%), Query Frame = 1
Query:   28 PLRLLLTGTAGTGKTVVIPETARRVEKQRFILMAPTGNAACAIGGMTIHSGFRILVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFSMVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPPVGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLGP---EQAARDTFLRIAEGTQTRSGWILL 648
            PL L++ G AGTGK+ +I    R + + +  + A TG A+  I G+TIHS  ++ +  R + + +  S      LQ+ + G+D+I VDE+SM+GQ   G +  R KQA       G+HD    + GG S IL GD  QLPPV  K +++P PS+   + QGYQ +   N  V+LT   R  G    +Q  RD  +R+  G  T + W +L
Sbjct:  250 PLFLIIIGEAGTGKSYLI-NAIRNLLQSKCAVTATTGKASFNIRGVTIHSLLKLPIGTRGNKDVTGQS---LCRLQESLNGIDYIIVDEYSMLGQTTFGWIDKRCKQAT------GHHD---RILGGKSFILTGDPGQLPPVADKPLYHPKPSNA-FAEQGYQTYRMFNKVVKLTVNQRVQGASIQQQQFRDLLMRLHVGDSTCNDWEML 445          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig169.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA18_9PHAE1.280e-9172.02ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K558_9PHAE6.950e-9173.39ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KFJ0_9PHAE1.970e-8973.39ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KIQ7_9PHAE6.120e-8174.87ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KDM0_9PHAE1.170e-8071.66ATP-dependent DNA helicase (Fragment) n=1 Tax=Ecto... [more]
A0A6H5KDL6_9PHAE6.590e-6269.09ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K692_9PHAE3.150e-5655.10ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
UPI00077B041D1.740e-2838.97ATP-dependent DNA helicase RRM3-like n=1 Tax=Acrop... [more]
UPI00106C3E433.480e-2838.03ATP-dependent DNA helicase pfh1-like n=1 Tax=Dendr... [more]
A0A6S7IHH9_PARCT9.280e-2736.67ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig169contigP-littoralis_Contig169:308430..309239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5111.M1W1A0
PFAMsHelitron_like_N,PIF1
Model size663
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.48e-20
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota,39RYU@33154|Opisthokonta,3P64X@4751|Fungi,3QU0F@4890|Ascomycota,21AWX@147550|Sordariomycetes,3TKC2@5125|Hypocreales,3G6A9@34397|Clavicipitaceae
DescriptionATP-dependent DNA helicase PIF1
Cds size663
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789812.0084538-CDS-P-littoralis_Contig169:308429..3089271680789812.0084538-CDS-P-littoralis_Contig169:308429..308927Pylaiella littoralis U1_48CDSP-littoralis_Contig169 308430..308927 -
1680789812.0217004-CDS-P-littoralis_Contig169:309074..3092391680789812.0217004-CDS-P-littoralis_Contig169:309074..309239Pylaiella littoralis U1_48CDSP-littoralis_Contig169 309075..309239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig169.52.1prot_P-littoralis_Contig169.52.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig169 308430..309239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig169.52.1

>prot_P-littoralis_Contig169.52.1 ID=prot_P-littoralis_Contig169.52.1|Name=mRNA_P-littoralis_Contig169.52.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=221bp
MGPLPQPPAPLRLLLTGTAGTGKTVVIPETARRVEKQRFILMAPTGNAAC
AIGGMTIHSGFRILVTNRRSSEPSQMSEGATMELQQRMTGVDFIFVDEFS
MVGQEMLGLMSARGKQAVRGRIRGGYHDGHLDVFGGLSIILVGDWAQLPP
VGAKSMWNPVPSSTGLSVQGYQAWLAMNNAVELTQVMRQLGPEQAARDTF
LRIAEGTQTRSGWILLQQIH*
back to top

mRNA from alignment at P-littoralis_Contig169:308430..309239-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig169.52.1 ID=mRNA_P-littoralis_Contig169.52.1|Name=mRNA_P-littoralis_Contig169.52.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=810bp|location=Sequence derived from alignment at P-littoralis_Contig169:308430..309239- (Pylaiella littoralis U1_48)
ATGGGGCCTCTTCCCCAGCCCCCGGCTCCACTCCGTTTGCTGCTTACGGG AACCGCAGGGACCGGAAAGACTGTCGTCATCCCGGAGACGGCCAGGAGGG TCGAAAAGCAGCGCTTCATTCTCATGGCCCCGACGGGCAACGCGGCTTGC GCTATTGGAGGAATGGTGAGAGATGTCTACCTGCCTCCCTCGCATGTCCT AAGCGTTTTACTAACCGACATATGTCTAGAATAAAAGGAGTGCTCACGCG CCCACCAACCTCACACAATCCTCGTTCAACTCAGTCGTCCCGTCATATTC CCCTTGCTGCAGACCATCCACAGCGGTTTCAGGATTCTCGTTACCAACCG ACGTTCGTCAGAGCCCAGCCAAATGAGTGAGGGTGCCACCATGGAACTCC AGCAGCGCATGACCGGCGTCGACTTCATCTTCGTCGACGAGTTCTCCATG GTGGGCCAAGAGATGCTGGGCCTCATGAGCGCCAGAGGCAAGCAGGCCGT TCGAGGCCGAATCCGAGGCGGGTACCATGATGGACACCTCGACGTCTTCG GAGGTCTCAGCATCATCCTCGTCGGTGACTGGGCTCAGCTTCCACCCGTC GGGGCCAAGTCCATGTGGAACCCCGTCCCTTCCTCCACCGGCCTTAGCGT GCAAGGGTATCAGGCATGGTTGGCAATGAACAACGCAGTTGAGCTCACGC AGGTCATGCGCCAGCTTGGCCCTGAGCAGGCCGCCCGAGACACCTTCCTG CGGATCGCAGAGGGCACTCAGACCCGGAGCGGCTGGATTCTTCTGCAGCA GATCCACTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig169:308430..309239-

>mRNA_P-littoralis_Contig169.52.1 ID=mRNA_P-littoralis_Contig169.52.1|Name=mRNA_P-littoralis_Contig169.52.1|organism=Pylaiella littoralis U1_48|type=CDS|length=663bp|location=Sequence derived from alignment at P-littoralis_Contig169:308430..309239- (Pylaiella littoralis U1_48)
ATGGGGCCTCTTCCCCAGCCCCCGGCTCCACTCCGTTTGCTGCTTACGGG
AACCGCAGGGACCGGAAAGACTGTCGTCATCCCGGAGACGGCCAGGAGGG
TCGAAAAGCAGCGCTTCATTCTCATGGCCCCGACGGGCAACGCGGCTTGC
GCTATTGGAGGAATGACCATCCACAGCGGTTTCAGGATTCTCGTTACCAA
CCGACGTTCGTCAGAGCCCAGCCAAATGAGTGAGGGTGCCACCATGGAAC
TCCAGCAGCGCATGACCGGCGTCGACTTCATCTTCGTCGACGAGTTCTCC
ATGGTGGGCCAAGAGATGCTGGGCCTCATGAGCGCCAGAGGCAAGCAGGC
CGTTCGAGGCCGAATCCGAGGCGGGTACCATGATGGACACCTCGACGTCT
TCGGAGGTCTCAGCATCATCCTCGTCGGTGACTGGGCTCAGCTTCCACCC
GTCGGGGCCAAGTCCATGTGGAACCCCGTCCCTTCCTCCACCGGCCTTAG
CGTGCAAGGGTATCAGGCATGGTTGGCAATGAACAACGCAGTTGAGCTCA
CGCAGGTCATGCGCCAGCTTGGCCCTGAGCAGGCCGCCCGAGACACCTTC
CTGCGGATCGCAGAGGGCACTCAGACCCGGAGCGGCTGGATTCTTCTGCA
GCAGATCCACTAG
back to top