mRNA_P-littoralis_Contig169.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig169.33.1
Unique NamemRNA_P-littoralis_Contig169.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig169.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig169contigP-littoralis_Contig169:215047..216349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size236
Hectar predicted targeting categoryother localisation
Exons2
Cds size231
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789810.1898448-UTR-P-littoralis_Contig169:215046..2150511680789810.1898448-UTR-P-littoralis_Contig169:215046..215051Pylaiella littoralis U1_48UTRP-littoralis_Contig169 215047..215051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789810.2007456-CDS-P-littoralis_Contig169:215051..2151691680789810.2007456-CDS-P-littoralis_Contig169:215051..215169Pylaiella littoralis U1_48CDSP-littoralis_Contig169 215052..215169 +
1680789810.213087-CDS-P-littoralis_Contig169:216236..2163491680789810.213087-CDS-P-littoralis_Contig169:216236..216349Pylaiella littoralis U1_48CDSP-littoralis_Contig169 216237..216349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig169.33.1prot_P-littoralis_Contig169.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig169 215052..216349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig169.33.1

>prot_P-littoralis_Contig169.33.1 ID=prot_P-littoralis_Contig169.33.1|Name=mRNA_P-littoralis_Contig169.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
MVKSPSTAPAIGTAVAGDTSGVQFPSVIDHSPARTIQPSGWKGLGVAAVL
GTVEPPSDAFEFDSGDFSALVLEHME*
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mRNA from alignment at P-littoralis_Contig169:215047..216349+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig169.33.1 ID=mRNA_P-littoralis_Contig169.33.1|Name=mRNA_P-littoralis_Contig169.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1303bp|location=Sequence derived from alignment at P-littoralis_Contig169:215047..216349+ (Pylaiella littoralis U1_48)
ACCCCATGGTGAAATCACCCTCCACTGCTCCTGCTATTGGAACTGCTGTC
GCCGGGGATACATCGGGCGTTCAATTCCCTTCTGTTATTGATCATTCTCC
TGCTCGCACAATCCAACCCAGCGGTAAGTACCACGGTTCTAAATAGCTCG
TGTCAGAAGTTTGGTAATGAGGCAAACGTTCCGCCTTACCGTACGCGAAC
GAGTGACGCATTCTTCGGCGGCCCTTGAATTAAAGTCTAGAGGGGAATTG
CTGAATATGGTCCATTTCATACCTCATAATTAGTGCGGTGTATGTTCTTA
CTTCGTTAATTAATGTCACTTCGTCGCGTAGGCAGTAAGTTCTCATTTCT
GCACGGATGTCCTTATTCTGCAGCAGTCCTGGTATACGGGGTACACATGT
CTCTGGCAATATCATTCCTTCATCTTTCTTCAACTCGTGTATGTTGCATC
GGGCTGGTGTATGAAGGGGGTAGGGATCGCGTGAGCGTCAGTTCAAGTGG
AATCGGTTCTTCTACAGGGCAGGTGGTCAGGATTGTGACCAAAGGGGTTG
GTATCTGACGCCCACGTGACTTCAATTCGCCTCTTTCAACAAAGTGATCC
CTGTCGGTTTCAACGGGGACGTCACGTGGTGCCACCTTTTCAAGCTTGGT
CGAGTGCCTTCTGTATTGATCGGGATTTCGAGCGGCTGTCTGTAGTTGGA
CAGTTTTCTGTGGTTAGGCTGGAGGCTCTGGCTCACGATTGCACTTAATG
TTTTATCTACTGTGATCCTAGTCCCTATAGAGAGCGACGAATACATCGAT
GTGTGCGTTCGCGTGTGTCATCATCCCATCTTTGGTGGACCCCCCGTCTA
CATCAATAAATGGTGCGAATCTCAATCACCAGTAAATACAACAGAAATCC
ATGACATGTGCTTGTCGGTAGCAGGGCATTGTGCTGCAGCGCCAGTATAG
CTGGGAGCTGTGATCTCGCTCGCTCTGATACTCCCACACTTCTAGAGCAG
GACCGCTGTACAGCAGTACATTACTAGGTTTTGACTGGGCTGCCACGTCG
ATTCGGTTTGAGAAAATCGGCGTTCGGTTCAAGATGAGTGTTCTGCCAAG
CGATTTTGACCTCTTCTTGAACCAACATTTATTTTACACCGAGCTCTTTT
CAACCAACCGTAATCATGACTGCTGCATCGCTCATTGCAGGTTGGAAAGG
GCTTGGAGTGGCGGCGGTGCTTGGCACGGTAGAGCCGCCATCGGATGCCT
TTGAATTCGATTCTGGTGACTTTTCTGCTCTCGTTTTGGAGCATATGGAG
TGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig169:215047..216349+

>mRNA_P-littoralis_Contig169.33.1 ID=mRNA_P-littoralis_Contig169.33.1|Name=mRNA_P-littoralis_Contig169.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig169:215047..216349+ (Pylaiella littoralis U1_48)
ATGGTGAAATCACCCTCCACTGCTCCTGCTATTGGAACTGCTGTCGCCGG
GGATACATCGGGCGTTCAATTCCCTTCTGTTATTGATCATTCTCCTGCTC
GCACAATCCAACCCAGCGGTTGGAAAGGGCTTGGAGTGGCGGCGGTGCTT
GGCACGGTAGAGCCGCCATCGGATGCCTTTGAATTCGATTCTGGTGACTT
TTCTGCTCTCGTTTTGGAGCATATGGAGTGA
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