mRNA_P-littoralis_Contig169.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig169.14.1
Unique NamemRNA_P-littoralis_Contig169.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig169.14.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 9.400e-7
Identity = 21/26 (80.77%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:    1 IAFEHFGFLGWTWRDKHMGSKLPLCL 78
            IA EHFG+LGW WR KH GSKLPLCL
Sbjct:   47 IAKEHFGYLGWKWRGKHFGSKLPLCL 72
[Close]
BLAST of mRNA_P-littoralis_Contig169.14.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 4.810e-5
Identity = 40/108 (37.04%), Postives = 52/108 (48.15%), Query Frame = 1 
Query:   34 TWRDKHM----GSKLPLCLEYICFLVILCLRVTQPGTFASGRRPIVPSPTRYVVSNL---CRIVAACALNPPPSPPPIPPQDILEHRFAHIRAGLGTLRNPTAAQAKE 336
            T   KH+    G KL     +I       LR++  G F S  R +   P R+ + +L   CR   +         P    QDI EHRF+HIRA LGT RNPTA +AK+
Sbjct:  109 TLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILG-FVSMCRYLFEDPERFQIDSLSPNCRRFLS---------PRNCSQDICEHRFSHIRAALGTHRNPTAREAKK 206
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig169.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6I9_9PHAE9.400e-780.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE4.810e-537.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig169contigP-littoralis_Contig169:29394..29729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size336
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789810.4777937-CDS-P-littoralis_Contig169:29393..297291680789810.4777937-CDS-P-littoralis_Contig169:29393..29729Pylaiella littoralis U1_48CDSP-littoralis_Contig169 29394..29729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig169.14.1prot_P-littoralis_Contig169.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig169 29394..29729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig169.14.1

>prot_P-littoralis_Contig169.14.1 ID=prot_P-littoralis_Contig169.14.1|Name=mRNA_P-littoralis_Contig169.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
IAFEHFGFLGWTWRDKHMGSKLPLCLEYICFLVILCLRVTQPGTFASGRR
PIVPSPTRYVVSNLCRIVAACALNPPPSPPPIPPQDILEHRFAHIRAGLG
TLRNPTAAQAKE
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mRNA from alignment at P-littoralis_Contig169:29394..29729+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig169.14.1 ID=mRNA_P-littoralis_Contig169.14.1|Name=mRNA_P-littoralis_Contig169.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig169:29394..29729+ (Pylaiella littoralis U1_48)
ATCGCCTTCGAACACTTCGGGTTTTTGGGATGGACCTGGAGGGATAAGCA
TATGGGCTCGAAGCTGCCTCTATGTCTTGAATATATATGTTTTTTGGTAA
TATTGTGCCTCCGCGTGACACAGCCTGGGACGTTTGCTAGCGGAAGGCGC
CCAATCGTCCCTTCTCCGACACGATATGTAGTATCTAATCTATGCCGTAT
TGTTGCCGCCTGCGCACTAAACCCACCGCCATCCCCCCCACCCATACCGC
CACAGGACATTCTCGAACACCGGTTTGCCCACATCCGTGCGGGGTTGGGG
ACATTGAGGAACCCCACGGCGGCACAGGCGAAGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig169:29394..29729+

>mRNA_P-littoralis_Contig169.14.1 ID=mRNA_P-littoralis_Contig169.14.1|Name=mRNA_P-littoralis_Contig169.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig169:29394..29729+ (Pylaiella littoralis U1_48)
ATCGCCTTCGAACACTTCGGGTTTTTGGGATGGACCTGGAGGGATAAGCA
TATGGGCTCGAAGCTGCCTCTATGTCTTGAATATATATGTTTTTTGGTAA
TATTGTGCCTCCGCGTGACACAGCCTGGGACGTTTGCTAGCGGAAGGCGC
CCAATCGTCCCTTCTCCGACACGATATGTAGTATCTAATCTATGCCGTAT
TGTTGCCGCCTGCGCACTAAACCCACCGCCATCCCCCCCACCCATACCGC
CACAGGACATTCTCGAACACCGGTTTGCCCACATCCGTGCGGGGTTGGGG
ACATTGAGGAACCCCACGGCGGCACAGGCGAAGGAG
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