mRNA_P-littoralis_Contig169.127.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig169.127.1
Unique NamemRNA_P-littoralis_Contig169.127.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig169.127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig169contigP-littoralis_Contig169:453415..453741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size328
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789810.720041-CDS-P-littoralis_Contig169:453414..4537231680789810.720041-CDS-P-littoralis_Contig169:453414..453723Pylaiella littoralis U1_48CDSP-littoralis_Contig169 453415..453723 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789810.7318084-UTR-P-littoralis_Contig169:453723..4537411680789810.7318084-UTR-P-littoralis_Contig169:453723..453741Pylaiella littoralis U1_48UTRP-littoralis_Contig169 453724..453741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig169.127.1prot_P-littoralis_Contig169.127.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig169 453415..453723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig169.127.1

>prot_P-littoralis_Contig169.127.1 ID=prot_P-littoralis_Contig169.127.1|Name=mRNA_P-littoralis_Contig169.127.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MFTCHMCNRQQNVGQLRIGVRDIHNEGHGWNHFCLVCWRTEQSEGAQAVR
RGPWDSDGTLGTTVGSSAAEGGIGSGGGAQAGSLPSGDDVLSGGACCGAG
DLE
back to top

mRNA from alignment at P-littoralis_Contig169:453415..453741-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig169.127.1 ID=mRNA_P-littoralis_Contig169.127.1|Name=mRNA_P-littoralis_Contig169.127.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig169:453415..453741- (Pylaiella littoralis U1_48)
CAATCTCGCGCCACGAAGATGTTTACGTGCCACATGTGCAATCGCCAGCA
GAACGTGGGGCAACTGCGGATTGGGGTTCGGGATATACACAACGAGGGAC
ACGGTTGGAACCATTTTTGCCTGGTGTGTTGGCGAACTGAGCAGAGTGAG
GGTGCTCAGGCCGTGAGGCGAGGGCCGTGGGACAGTGACGGTACGCTGGG
CACTACCGTTGGAAGCTCTGCAGCGGAAGGCGGAATCGGAAGTGGCGGCG
GTGCGCAAGCTGGTTCTCTTCCGTCAGGCGACGACGTGCTGTCAGGTGGG
GCTTGCTGCGGTGCCGGCGATCTTGAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig169:453415..453741-

>mRNA_P-littoralis_Contig169.127.1 ID=mRNA_P-littoralis_Contig169.127.1|Name=mRNA_P-littoralis_Contig169.127.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig169:453415..453741- (Pylaiella littoralis U1_48)
ATGTTTACGTGCCACATGTGCAATCGCCAGCAGAACGTGGGGCAACTGCG
GATTGGGGTTCGGGATATACACAACGAGGGACACGGTTGGAACCATTTTT
GCCTGGTGTGTTGGCGAACTGAGCAGAGTGAGGGTGCTCAGGCCGTGAGG
CGAGGGCCGTGGGACAGTGACGGTACGCTGGGCACTACCGTTGGAAGCTC
TGCAGCGGAAGGCGGAATCGGAAGTGGCGGCGGTGCGCAAGCTGGTTCTC
TTCCGTCAGGCGACGACGTGCTGTCAGGTGGGGCTTGCTGCGGTGCCGGC
GATCTTGAG
back to top