mRNA_P-littoralis_Contig169.117.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig169.117.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 162 bits (410), Expect = 6.050e-48 Identity = 84/143 (58.74%), Postives = 99/143 (69.23%), Query Frame = 1
Query: 1 RRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTNDVRN------------------SFPREYL-EKAGQ-PDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCV 369
RR DRYCTSP AV+AL+ V +EG VLDMCGG DA+A RLG +C VVTND+ SF ++L K GQ PDWV+TSPPY+GA+ +VKSAL +A GVALKLPLSFLEPCADRG WL+ NPP+VCV
Sbjct: 77 RRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCV 219
BLAST of mRNA_P-littoralis_Contig169.117.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE) HSP 1 Score: 158 bits (399), Expect = 3.430e-46 Identity = 80/145 (55.17%), Postives = 101/145 (69.66%), Query Frame = 1
Query: 1 RRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTNDV-------------RNSFPREYL--EKAGQPDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVTH 390
RR DRYCTSP+ ++AL+ VSI G VLDMCGG DAVA+RL +C V+TNDV SF ++L QPDW+VTSPPY+GA+ FVK+AL VA+ GVALKLPLSFLEPCADR WL+ NPP++C+++ R +
Sbjct: 65 RRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARY 209
BLAST of mRNA_P-littoralis_Contig169.117.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE) HSP 1 Score: 159 bits (403), Expect = 6.420e-46 Identity = 83/146 (56.85%), Postives = 96/146 (65.75%), Query Frame = 1
Query: 1 RRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTNDVRNSFP------------REYLEKAG---QPDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVTHT 393
RR DRYCT P AV+ L V+I G VLDMCGG DAVA +C V+TNDV + R+ KA QPDWVVTSPPY+GA+ FVK+AL VA GVALKLPLSFLEPCADRG WL +NPP+VC+ LRR +T
Sbjct: 123 RRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRAKYT 268
BLAST of mRNA_P-littoralis_Contig169.117.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE) HSP 1 Score: 146 bits (369), Expect = 6.960e-41 Identity = 79/152 (51.97%), Postives = 99/152 (65.13%), Query Frame = 1
Query: 1 RRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTNDV-------------------RNSFPREYLEKA--GQPDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVTHT 393
RR DRYCTS AV+AL+ V++ G VLDMCGG DAVA +L +C VVTNDV +++F E+L QP+ VV SPPY+GA+ FVK+AL VA++GVALK LSFLEPC DR WL+ NPP+VCV LRR ++T
Sbjct: 113 RRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLRRASYT 264
BLAST of mRNA_P-littoralis_Contig169.117.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE) HSP 1 Score: 125 bits (314), Expect = 1.600e-34 Identity = 61/102 (59.80%), Postives = 73/102 (71.57%), Query Frame = 1
Query: 88 MCGGRMDAVALRLGLSCTVVTNDVRNSFPREYLEKAGQPDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVTHT 393
MCGG DAVAL G +C V+TNDV + + K QPDWVVTSPPY+GA+ FVK+ L VA GVAL+LPLSF +PCADRG WL +NPP +C LRR +T
Sbjct: 1 MCGGPEDAVALGFGGTCEVLTNDVSSRLSPAHPGK--QPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLRRAKYT 100
BLAST of mRNA_P-littoralis_Contig169.117.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 121 bits (304), Expect = 8.380e-33 Identity = 60/117 (51.28%), Postives = 76/117 (64.96%), Query Frame = 1
Query: 88 MCGGRMDAVALRLGLSCTVVTNDVRNS-------------FPREYLE--KAGQPDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVTHT 393
MCGG DAVA RL +C ++TNDV + FP ++L +P+WVVTSPPY A+ FVK+A+ +A GVA K+P+ FLEPCADRG WL+ NPPSVCV LRR +T
Sbjct: 1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYT 117
BLAST of mRNA_P-littoralis_Contig169.117.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE) HSP 1 Score: 109 bits (273), Expect = 9.840e-28 Identity = 62/125 (49.60%), Postives = 77/125 (61.60%), Query Frame = 1
Query: 1 RRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTNDVRNSFPREYLEK--AGQPDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADR------GIWLKEN 351
RR DRYCTSP+AVDAL A V+I G VLDMCGG DAVA G +CT + + FP E+++ +PDWVVTSPPY+G++ FV +AL VA GVALKL L P G+W +
Sbjct: 42 RRRLDRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVAQGFGGTCTNLDASLVY-FPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNPVPTGEVGEFWGVWYTDG 165
BLAST of mRNA_P-littoralis_Contig169.117.1 vs. uniprot
Match: A0A6H5KAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM1_9PHAE) HSP 1 Score: 105 bits (263), Expect = 8.320e-27 Identity = 48/77 (62.34%), Postives = 61/77 (79.22%), Query Frame = 1
Query: 166 SFPREYL--EKAGQPDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVTH 390
S+ +YL QPDWVV SPPY+GA++FVK+AL VA+ GVALKLPLSFLEPCADR WL+ENPPS+C+++ R +
Sbjct: 22 SYADDYLAAHNGQQPDWVVASPPYKGALSFVKAALTVAKEGVALKLPLSFLEPCADRAGWLQENPPSLCMMMSRARY 98
BLAST of mRNA_P-littoralis_Contig169.117.1 vs. uniprot
Match: A0A6H5JT40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT40_9PHAE) HSP 1 Score: 104 bits (260), Expect = 2.430e-26 Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 1
Query: 166 SFPREYL--EKAGQPDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVTH 390
SF +YL QPDWVV+SPPY GA+ FVK+AL VA+ GVALKLPLSFLEPCADR +WL+ NPP++C+++ R +
Sbjct: 23 SFADDYLAAHNGQQPDWVVSSPPYEGALAFVKAALTVAKEGVALKLPLSFLEPCADRAVWLQANPPALCMMMSRARY 99
BLAST of mRNA_P-littoralis_Contig169.117.1 vs. uniprot
Match: A0A6H5JSV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV3_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 6.530e-24 Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 1
Query: 199 QPDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVTH 390
QPDWVVT PPY GA+ FVK+AL VA+ GVALKLPLSFLEPCADR WL+ NPP++C+++ R +
Sbjct: 76 QPDWVVTRPPYNGALAFVKAALPVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARY 139 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig169.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig169.117.1 >prot_P-littoralis_Contig169.117.1 ID=prot_P-littoralis_Contig169.117.1|Name=mRNA_P-littoralis_Contig169.117.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp RRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTback to top mRNA from alignment at P-littoralis_Contig169:438759..439438+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig169.117.1 ID=mRNA_P-littoralis_Contig169.117.1|Name=mRNA_P-littoralis_Contig169.117.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=680bp|location=Sequence derived from alignment at P-littoralis_Contig169:438759..439438+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig169:438759..439438+ >mRNA_P-littoralis_Contig169.117.1 ID=mRNA_P-littoralis_Contig169.117.1|Name=mRNA_P-littoralis_Contig169.117.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig169:438759..439438+ (Pylaiella littoralis U1_48)back to top |