mRNA_P-littoralis_Contig168.68.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig168.68.1 vs. uniprot
Match: D7FZA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA3_ECTSI) HSP 1 Score: 1334 bits (3453), Expect = 0.000e+0 Identity = 691/954 (72.43%), Postives = 781/954 (81.87%), Query Frame = 1
Query: 310 NRTPTTLGRDVNRVVLSSQDFLHPAIVDTMVSARD-SGVGPSARPPPPGGADTFATIARAYRGVNRRHLTLHLCEAFEESTGQPLVPSTPEGLVLLLEAMRPNTV---RHAGRPGSGSKTREFGGERAVKELLRRYEEGGKAVPLSAYEAAVKALDGPDCSVALELAREVRSKLGDSTEGLGDLYGVVMRQCELRHAPDMVLAILKERREAGGSLAPDRDAYAMALASLGRARRVSEALDLFGEMLGAGEKPSAPAVNGVLAGCARDPKKFWRHAKLMVEGMEEKWSISPNVHHYTSLVTCLLKAGQWGEAIAMTDRMEGESITPNSRYLDHMMQASVAAKQWVTAEAIFRAMTEKYGHSTIVTRQSTFHFIQAMVKQKKLRKVISYVARAQDFPLTG----RFPKGTMDTALLKWFRMIPGVTSEALAGVLVSMLDKGVRLHPDSYSVVISRANQQDGNKELSETLYNMLLAGNRAPSLSAANAVVKGSKTIEEALGIVASLRDHGLSPDKFTYAALLHCCSTAVDDDLQGQRATEVWQAMTDEGVVPHGGMLASYLLALMRSSDWKLALEVRERYRGGNEEFKLSHAERHVGKLDFVTRESAVVDGVMANGLVDNGQSKLALPYVLRVLKDREEEGISVGGSRRDESERFVDEDNHTVLAGIRACKEEGSCEIAMSLLAACEATWARGPRARDEERGGGGEGGQQGDHEWREMLVRTRLSRRRLYDCLVSVLDQRGQEFGDIRRVLESGMRNGTISLMKDQQGGTSADQAIDFHGWSTRSARCILRCLVEDLARGRDFLLEMEQYDLGRVVAAQGLREFGHVSDRWHVDSPDPRGRRREFADGVTPARFADREYGKGRKR-PEKS-RWEKPKGGWDGRGSDETQARWWEKEKRLSLIVGKPRPPPCIRNAVEEFCTLGVSPPLRIRKDASNPGILTIEPEDVVAWLGRDPRV 3141
+R P TLGRDV R+V S QDFL P IVD MVSA S VG G D FA IA+AY + R LTL LCEAFEESTG+PLVPSTP+GLV LL AMR + R RPG RE G R VKE+LRRYEEGGK VP+ AY+AAV+AL G C+VALE+A+E RSKLGDS EGL ++Y VM+QC + PD++ +L+ER +AGG++APD AY +AL LG+ARR+SEAL+LFGEML +G +P+A A+N +L+GCARD KFWRHA + EGM ++W ++PNV+HYTSLVTCLLKAGQW EAIA+TD+MEGE I PNSR+LDHMMQASVAAKQWVTAEAIFRAMTEKYGHS +VTRQST FIQ+MV QKKLRKVISYVAR QD PL G + K TMDTALLKWFR IPGV+SEA+AGVL++MLDKGVRLHPDSYSVVIS+ANQ DGNKELS TLY MLLA N APSLSAANA +KGS TI+EAL V +LR+ GLSPDKFT+AALLHCCS AV DDLQGQRATEVW+AM EG+ PHGGMLASYLL+LMRS+DWK AL+VRERYRG EEF+LSHAERHV KLDFV RE AVVDGV+ANGLVDN Q LAL YVL VLK REEEG S GS D + F+DEDNHTVLAGIRACK+ GSCE AM LL ACEA WARGP RD RG GGE GQ HEWR+MLVRTRLSRRRLYDCL+SVLD++ +FGDIRRVLE GMRNG +SLMKDQQGGTSADQA+DFHGWSTRSA CI+RC++EDL G+DFL QYDLGR AQGLREFG+VSDRWHVDSPDPRGRRREFADGVTPARFA+REYGKGRKR PE + RW KP+GGWDG GSDE+QARWWEK+KRLSL+VG+PRPPPCIRNAVEEFC LGVSPPLR++K ASNPGILTIEPEDV AWLGR+PR+
Sbjct: 3 DRRPATLGRDVGRMVRSGQDFLSPEIVDLMVSASTRSTVGSPPLLADTAGVDVFAVIAKAYHRLRRHDLTLQLCEAFEESTGEPLVPSTPQGLVWLLGAMRRRSTTAPRSGRRPGRHD--REGEGGREVKEVLRRYEEGGKDVPVVAYKAAVEALAGCHCTVALEMAQEARSKLGDSAEGLCEVYVAVMKQCIEQQEPDVMRDVLEERIQAGGTMAPDARAYELALGCLGKARRMSEALELFGEMLESGVQPNAIAINHMLSGCARDADKFWRHANTIFEGMAQRWGVAPNVYHYTSLVTCLLKAGQWSEAIALTDKMEGEGIPPNSRFLDHMMQASVAAKQWVTAEAIFRAMTEKYGHSNVVTRQSTMDFIQSMVMQKKLRKVISYVARIQDLPLKGPSRSKGRKNTMDTALLKWFRAIPGVSSEAMAGVLMTMLDKGVRLHPDSYSVVISKANQ-DGNKELSGTLYKMLLAANAAPSLSAANAAIKGSATIDEALATVETLREQGLSPDKFTFAALLHCCSAAVGDDLQGQRATEVWEAMCGEGIRPHGGMLASYLLSLMRSADWKTALDVRERYRGDEEEFQLSHAERHVHKLDFVAREEAVVDGVVANGLVDNKQPDLALAYVLEVLKAREEEGASDIGSDSD-LKHFIDEDNHTVLAGIRACKQVGSCETAMGLLEACEARWARGPLERDAGRGDGGEEGQWAQHEWRQMLVRTRLSRRRLYDCLISVLDEKDHDFGDIRRVLERGMRNGAVSLMKDQQGGTSADQAVDFHGWSTRSAGCIVRCIIEDLTLGQDFLHRTGQYDLGRAALAQGLREFGNVSDRWHVDSPDPRGRRREFADGVTPARFAEREYGKGRKRNPESTPRWVKPEGGWDGCGSDESQARWWEKQKRLSLVVGRPRPPPCIRNAVEEFCMLGVSPPLRVQKAASNPGILTIEPEDVQAWLGRNPRI 952
BLAST of mRNA_P-littoralis_Contig168.68.1 vs. uniprot
Match: A0A6H5L791_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L791_9PHAE) HSP 1 Score: 623 bits (1606), Expect = 6.490e-209 Identity = 315/404 (77.97%), Postives = 346/404 (85.64%), Query Frame = 1
Query: 1942 MLASYLLALMRSSDWKLALEVRERYRGGNEEFKLSHAERHVGKLDFVTRESAVVDGVMANGLVDNGQSKLALPYVLRVLKDREE--EGISVGGSRRDESERFVDEDNHTVLAGIRACKEEGSCEIAMSLLAACEATWARGPRARDEERGGGGEGGQQGDHEWREMLVRTRLSRRRLYDCLVSVLDQRGQEFGDIRRVLESGMRNGTISLMKDQQGGTSADQAIDFHGWSTRSARCILRCLVEDLARGRDFLLEMEQYDLGRVVAAQGLREFGHVSDRWHVDSPDPRGRRREFADGVTPARFADREYGKGRKR-PEK-SRWEKPKGGWDGRGSDETQARWWEKEKRLSLIVGKPRPPPCIRNAVEEFCTLGVSPPLRIRKDASNPGILTIEPEDVVAWLGRDPRV 3141
MLASYLLALMRS DWK AL+VRERYRG EEF+LSHAERHV KLDFV RE AVVDGV+ANGLVDN Q LAL YVL VLK REE EG S G+ D + F+DEDNHTVLAGIRACK+ GSCE A+ LL ACEA WA+GP RD GGG E GQ +EWR MLVRTRLSRRRLYDCL+SVLD++ +FGDIRRVLE+GM+NG +SLMKDQQGGTSADQA+DFHGWSTRSARCI+RC++EDL G+DFL QYDLGRV AQGLREFG+VSDRWHVDSPDPRGRRREFADGVTPARFA+REYGKGRKR PEK S W KP+GGWDGRGSDE+QARWWEK+KRLSL+VGKPRPPPCIRNAVEEFC LGVSPPLR++K ASNPGILTIEPEDV AWL R+PRV
Sbjct: 1 MLASYLLALMRSGDWKTALDVRERYRGDKEEFQLSHAERHVHKLDFVAREEAVVDGVVANGLVDNKQPGLALAYVLEVLKAREEGKEGASGNGNDSD-LKHFIDEDNHTVLAGIRACKQAGSCETAIGLLEACEARWAKGPLERDAGSGGGSEEGQWAQYEWRAMLVRTRLSRRRLYDCLISVLDEKDHDFGDIRRVLETGMKNGAVSLMKDQQGGTSADQAVDFHGWSTRSARCIVRCIIEDLTLGQDFLHRTGQYDLGRVALAQGLREFGNVSDRWHVDSPDPRGRRREFADGVTPARFAEREYGKGRKRNPEKKSHWVKPEGGWDGRGSDESQARWWEKQKRLSLVVGKPRPPPCIRNAVEEFCMLGVSPPLRVQKAASNPGILTIEPEDVQAWLERNPRV 403
BLAST of mRNA_P-littoralis_Contig168.68.1 vs. uniprot
Match: UPI001CC805E7 (pentatricopeptide repeat-containing protein At3g14330 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC805E7) HSP 1 Score: 59.3 bits (142), Expect = 5.130e-5 Identity = 46/141 (32.62%), Postives = 70/141 (49.65%), Query Frame = 1
Query: 1000 VSEALDLFGEMLGAGEKPSAPAVNGVLAGCARDPKKFWRHAKLMVEG------MEEKWSISPNVHHYTSLVTCLLKAGQWGEAIAMTDRMEGESITPNSRYLDHMMQA-----SVAAKQWVTAEAIFRAMTEKYGHSTIVT 1389
+SEA+DLF EM+G G KP +L+GC+ H L VEG ME + +SP V HY LV L +AGQ EA+ + RM ++P+S ++ + ++A + V AE +F G+ I++
Sbjct: 361 MSEAIDLFDEMIGMGFKPDGLTFIALLSGCS--------HVGLTVEGQRFFDRMETDYGVSPTVEHYACLVDLLGRAGQIKEALDVVKRMP---MSPSSSIWGSLLNSCRIHGNIALGE-VMAERLFEIEPNNPGNYVILS 489 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig168.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig168.68.1 >prot_P-littoralis_Contig168.68.1 ID=prot_P-littoralis_Contig168.68.1|Name=mRNA_P-littoralis_Contig168.68.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1035bp MIQYAARRACTTSLRQGKVCRWGVPRNAHIPCRSRSAGPFAVSDAWTNTNback to top mRNA from alignment at P-littoralis_Contig168:400440..418827+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig168.68.1 ID=mRNA_P-littoralis_Contig168.68.1|Name=mRNA_P-littoralis_Contig168.68.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=18388bp|location=Sequence derived from alignment at P-littoralis_Contig168:400440..418827+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig168:400440..418827+ >mRNA_P-littoralis_Contig168.68.1 ID=mRNA_P-littoralis_Contig168.68.1|Name=mRNA_P-littoralis_Contig168.68.1|organism=Pylaiella littoralis U1_48|type=CDS|length=3105bp|location=Sequence derived from alignment at P-littoralis_Contig168:400440..418827+ (Pylaiella littoralis U1_48)back to top |