mRNA_P-littoralis_Contig168.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig168.12.1
Unique NamemRNA_P-littoralis_Contig168.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig168.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig168contigP-littoralis_Contig168:92095..92288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size184
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size105
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789807.7075243-UTR-P-littoralis_Contig168:92094..920961680789807.7075243-UTR-P-littoralis_Contig168:92094..92096Pylaiella littoralis U1_48UTRP-littoralis_Contig168 92095..92096 +
1680789807.737635-UTR-P-littoralis_Contig168:92211..922881680789807.737635-UTR-P-littoralis_Contig168:92211..92288Pylaiella littoralis U1_48UTRP-littoralis_Contig168 92212..92288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789807.7188978-CDS-P-littoralis_Contig168:92096..921971680789807.7188978-CDS-P-littoralis_Contig168:92096..92197Pylaiella littoralis U1_48CDSP-littoralis_Contig168 92097..92197 +
1680789807.728938-CDS-P-littoralis_Contig168:92207..922111680789807.728938-CDS-P-littoralis_Contig168:92207..92211Pylaiella littoralis U1_48CDSP-littoralis_Contig168 92208..92211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig168.12.1prot_P-littoralis_Contig168.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig168 92097..92211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig168.12.1

>prot_P-littoralis_Contig168.12.1 ID=prot_P-littoralis_Contig168.12.1|Name=mRNA_P-littoralis_Contig168.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=35bp
MSIWFCFNCASFQGWCHLVHKFGMMAFMGWATRT*
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mRNA from alignment at P-littoralis_Contig168:92095..92288+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig168.12.1 ID=mRNA_P-littoralis_Contig168.12.1|Name=mRNA_P-littoralis_Contig168.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=194bp|location=Sequence derived from alignment at P-littoralis_Contig168:92095..92288+ (Pylaiella littoralis U1_48)
AGATGAGTATTTGGTTTTGTTTCAATTGTGCCTCGTTCCAGGGGTGGTGC
CATCTAGTGCACAAGTTTGGCATGATGGCGTTCATGGGTTGGGCGACGCG
GACGCGGCCTCAGTTGAAATAGTATGAGACCACGCGGAGTATTGAGTCGT
TGGAACATGGTCTCAGTCGTGCGTCGTACGACATGCGGCACTAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig168:92095..92288+

>mRNA_P-littoralis_Contig168.12.1 ID=mRNA_P-littoralis_Contig168.12.1|Name=mRNA_P-littoralis_Contig168.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=105bp|location=Sequence derived from alignment at P-littoralis_Contig168:92095..92288+ (Pylaiella littoralis U1_48)
ATGAGTATTTGGTTTTGTTTCAATTGTGCCTCGTTCCAGGGGTGGTGCCA
TCTAGTGCACAAGTTTGGCATGATGGCGTTCATGGGTTGGGCGACGCGGA
CTTGA
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