mRNA_P-littoralis_Contig167.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig167.53.1
Unique NamemRNA_P-littoralis_Contig167.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig167.53.1 vs. uniprot
Match: A0A6H5JT94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT94_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 9.220e-17
Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 2 
Query:  392 DRLAAQQTPEGLYSLILCFTSSGPIVRMKCGHNGCNATANPTDTLPITC 538
            D LAAQQTPEGLYSLIL  +SS PIVRMKCGHNGCNATANPTD LP TC
Sbjct:   61 DCLAAQQTPEGLYSLILHLSSSRPIVRMKCGHNGCNATANPTDALPTTC 109
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BLAST of mRNA_P-littoralis_Contig167.53.1 vs. uniprot
Match: A0A6H5JHK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK4_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.320e-5
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = -1 
Query:  445 VMGNVSVGLAVALQPLCPHFMRTMGPEEVK 534
            VMG  SVGLAVALQPL P+FMRTMGPEE K
Sbjct:   48 VMGRASVGLAVALQPLWPYFMRTMGPEEEK 77
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig167.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT94_9PHAE9.220e-1785.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHK4_9PHAE1.320e-583.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig167contigP-littoralis_Contig167:277337..278696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size785
Hectar predicted targeting categoryother localisation
Exons2
Cds size783
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789805.3320415-CDS-P-littoralis_Contig167:277338..2775821680789805.3320415-CDS-P-littoralis_Contig167:277338..277582Pylaiella littoralis U1_48CDSP-littoralis_Contig167 277339..277582 -
1680789805.3457491-CDS-P-littoralis_Contig167:278157..2786961680789805.3457491-CDS-P-littoralis_Contig167:278157..278696Pylaiella littoralis U1_48CDSP-littoralis_Contig167 278158..278696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig167.53.1prot_P-littoralis_Contig167.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig167 277339..278696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig167.53.1

>prot_P-littoralis_Contig167.53.1 ID=prot_P-littoralis_Contig167.53.1|Name=mRNA_P-littoralis_Contig167.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=261bp
ISFTYPPTSYLCPSMLACWPTIFLSYRVSSVALFPTFLFRYIFHASIYTF
HHHFSRLMHAYCILASHTPAFNPLRSSFFRLPHFLYIPQNPGFQPRQASH
RCQHFPQRQTRTIPFGHLQGRPQPGQGHLLRPPRRPANAGGPLLPHTLLY
LLWTHRSHEVRTQRLQRHGQPHGYVTHHVLSPAHTSPKREASSSASKKTP
STKAKRTKQPVPPPSDTSSSAADDAESDDDFIADSDDGNDDSHDEYVISD
DDDSEESEPAS
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mRNA from alignment at P-littoralis_Contig167:277337..278696-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig167.53.1 ID=mRNA_P-littoralis_Contig167.53.1|Name=mRNA_P-littoralis_Contig167.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1360bp|location=Sequence derived from alignment at P-littoralis_Contig167:277337..278696- (Pylaiella littoralis U1_48)
ATTTCTTTCACGTATCCACCAACGTCTTATTTATGCCCTTCCATGCTGGC
TTGCTGGCCTACCATCTTCCTTTCCTATCGTGTCAGTTCTGTAGCCCTTT
TCCCTACATTCCTCTTTCGTTACATATTCCATGCATCCATCTACACCTTT
CACCACCACTTTTCCCGACTAATGCATGCCTACTGCATCCTCGCCTCTCA
CACACCCGCTTTCAACCCTCTCCGCTCTTCTTTCTTTCGCCTTCCCCATT
TCCTGTATATTCCACAAAATCCAGGTTTCCAGCCGCGGCAAGCTTCTCAT
CGCTGCCAACACTTCCCACAACGCCAAACCCGCACAATCCCCTTCGGTCA
TCTACAAGGCCGCCCTCAACCCGGCCAAGGTCATCTCCTTCGACCGCCTC
GCCGCCCAGCAAACGCCGGAGGGCCTCTACTCCCTCATACTCTGCTTTAC
CTCCTCTGGACCCATCGTTCGCATGAAGTGCGGACACAACGGCTGCAACG
CCACGGCCAACCCCACGGATACGTTACCCATCACGTGTTCTAACAAGACC
ACCCCGCACGTCCACAAAACGTACGACATGATTCCGACCCTCTTCGCCGT
CCTCTCGGCAAACTCCACCCAGGACTGCGGCCCCAAAACCCCAGACGGCA
TTCCCATCCCAGCGACCTTCTCCATCGGCACACAGGTATGAACTTCTAAA
CTTCCCGACGTTCCTACACACACACCCGTCTTTAACATTTCTGGTTCCAG
CTTCCCATTTCTATTTCACAGCGCTATCTTTCACTAATCAACACCAACCC
TTCTCCCGCTTTCCACACCCTTCTACCTTTCCTTGCCCTTCTACCTTTCC
TTGCCCGCAACAGGTGCTCCAGGAGGTCCTCATCTGCGACGGCGAGGAAT
ACGTCCACCTGACCCCCGACGAACAGAAGTCCCGCTCCGCGTGGTTCATC
GACATGAAGTACGTCGCGGCCGTCGAGAAGAAACGGTGGGGTGACCAGCG
CAGGTGGGCCTACCACGTCGTCGGCCTTAACAGCGACATCAACGTCATCA
ACCGTCTTCACGCTTCCCGCACCCCTTCCCATCCCACCATCGACCTCTCC
ACGACCGACCCGGCATCTCCCGCCCACACCTCCCCCAAACGGGAGGCTTC
GTCGTCCGCTTCAAAGAAAACGCCTTCCACCAAAGCTAAGCGGACGAAGC
AACCCGTGCCACCCCCCTCCGACACATCCTCTTCCGCTGCCGACGACGCC
GAGAGCGATGACGACTTCATCGCCGACAGCGACGACGGCAACGACGACAG
CCACGACGAGTACGTCATCTCCGACGACGACGATTCTGAAGAGTCGGAAC
CCGCCTCGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig167:277337..278696-

>mRNA_P-littoralis_Contig167.53.1 ID=mRNA_P-littoralis_Contig167.53.1|Name=mRNA_P-littoralis_Contig167.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=783bp|location=Sequence derived from alignment at P-littoralis_Contig167:277337..278696- (Pylaiella littoralis U1_48)
ATTTCTTTCACGTATCCACCAACGTCTTATTTATGCCCTTCCATGCTGGC
TTGCTGGCCTACCATCTTCCTTTCCTATCGTGTCAGTTCTGTAGCCCTTT
TCCCTACATTCCTCTTTCGTTACATATTCCATGCATCCATCTACACCTTT
CACCACCACTTTTCCCGACTAATGCATGCCTACTGCATCCTCGCCTCTCA
CACACCCGCTTTCAACCCTCTCCGCTCTTCTTTCTTTCGCCTTCCCCATT
TCCTGTATATTCCACAAAATCCAGGTTTCCAGCCGCGGCAAGCTTCTCAT
CGCTGCCAACACTTCCCACAACGCCAAACCCGCACAATCCCCTTCGGTCA
TCTACAAGGCCGCCCTCAACCCGGCCAAGGTCATCTCCTTCGACCGCCTC
GCCGCCCAGCAAACGCCGGAGGGCCTCTACTCCCTCATACTCTGCTTTAC
CTCCTCTGGACCCATCGTTCGCATGAAGTGCGGACACAACGGCTGCAACG
CCACGGCCAACCCCACGGATACGTTACCCATCACGTGTTATCTCCCGCCC
ACACCTCCCCCAAACGGGAGGCTTCGTCGTCCGCTTCAAAGAAAACGCCT
TCCACCAAAGCTAAGCGGACGAAGCAACCCGTGCCACCCCCCTCCGACAC
ATCCTCTTCCGCTGCCGACGACGCCGAGAGCGATGACGACTTCATCGCCG
ACAGCGACGACGGCAACGACGACAGCCACGACGAGTACGTCATCTCCGAC
GACGACGATTCTGAAGAGTCGGAACCCGCCTCG
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