mRNA_P-littoralis_Contig167.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig167.22.1
Unique NamemRNA_P-littoralis_Contig167.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig167.22.1 vs. uniprot
Match: D7G2H5_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H5_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.930e-16
Identity = 55/158 (34.81%), Postives = 84/158 (53.16%), Query Frame = 3 
Query:  111 SPGAFLFMLSKDIVSGSSTFKPAKWGTLQDRQHRAVCRWKGRGPIFGSGPDLRVGPGNL----VVARRKS*KILASSSFFDLHGQKVVDLEVFRAVDHAIAEQPAAKRAKTGGSE-TNEAIHPNLSAMPPQEGDDDASMFGKSVGGALLEKRAALHRA 569
            S GAF+FML    + G ++F+P KWG   +     V     RGP FG   DL V   N     + A+  S  + + S+F +L+GQ + ++EVF+    A      +KR K  G E T+ A+  + +    +E + DA  FG ++ GAL+E+R ALH+A
Sbjct:  246 SLGAFIFMLKDSDMGGPNSFQPVKWGKRDNNGGCDVVVGASRGPYFGR-TDLVVNFNNYFPVTLQAQPYSYDVPSGSTFPNLNGQTITEIEVFQVYSAAATTSSPSKRLKIQGPEDTHGAVSTSSTNTASREANSDAETFGNAIAGALMEERIALHQA 402
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig167.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2H5_ECTSI1.930e-1634.81TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig167contigP-littoralis_Contig167:110100..110668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size569
Hectar predicted targeting categoryother localisation
Exons1
Cds size222
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789806.1062913-UTR-P-littoralis_Contig167:110099..1101881680789806.1062913-UTR-P-littoralis_Contig167:110099..110188Pylaiella littoralis U1_48UTRP-littoralis_Contig167 110100..110188 +
1680789806.127682-UTR-P-littoralis_Contig167:110410..1106681680789806.127682-UTR-P-littoralis_Contig167:110410..110668Pylaiella littoralis U1_48UTRP-littoralis_Contig167 110411..110668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789806.117621-CDS-P-littoralis_Contig167:110188..1104101680789806.117621-CDS-P-littoralis_Contig167:110188..110410Pylaiella littoralis U1_48CDSP-littoralis_Contig167 110189..110410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig167.22.1prot_P-littoralis_Contig167.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig167 110189..110410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig167.22.1

>prot_P-littoralis_Contig167.22.1 ID=prot_P-littoralis_Contig167.22.1|Name=mRNA_P-littoralis_Contig167.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
MVRASSPSPGAFLFMLSKDIVSGSSTFKPAKWGTLQDRQHRAVCRWKGRG
PIFGSGPDLRVGPGNLVVARRKS*
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mRNA from alignment at P-littoralis_Contig167:110100..110668+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig167.22.1 ID=mRNA_P-littoralis_Contig167.22.1|Name=mRNA_P-littoralis_Contig167.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=569bp|location=Sequence derived from alignment at P-littoralis_Contig167:110100..110668+ (Pylaiella littoralis U1_48)
ACTGCTTCGGGTGGAAAACTCAGGTGCTGACAGCACGTGCAGCATAGTTG
GGGGAATCTCCAGCATGCCGTGGACTCCGCTGGAGAACAATGGTGCGGGC
TTCAAGTCCGTCTCCAGGTGCCTTCTTGTTTATGCTCAGCAAAGACATTG
TGAGTGGATCGAGCACCTTCAAGCCGGCGAAGTGGGGGACCTTGCAAGAT
CGCCAGCACAGAGCCGTTTGTCGTTGGAAAGGAAGAGGCCCCATCTTTGG
TTCAGGCCCTGATTTGAGGGTGGGTCCAGGAAACCTTGTAGTGGCACGTC
GCAAAAGCTAGAAAATCCTGGCTTCGTCCTCGTTTTTTGACCTCCATGGT
CAGAAGGTGGTGGATTTGGAGGTTTTCCGGGCGGTCGATCATGCAATAGC
AGAGCAACCAGCTGCCAAACGTGCCAAAACTGGAGGGTCCGAGACGAATG
AAGCCATACATCCGAATCTTTCTGCCATGCCACCTCAGGAGGGTGACGAT
GACGCCAGCATGTTTGGAAAATCGGTCGGCGGCGCCCTCTTGGAGAAACG
GGCGGCCCTACACCGTGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig167:110100..110668+

>mRNA_P-littoralis_Contig167.22.1 ID=mRNA_P-littoralis_Contig167.22.1|Name=mRNA_P-littoralis_Contig167.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig167:110100..110668+ (Pylaiella littoralis U1_48)
ATGGTGCGGGCTTCAAGTCCGTCTCCAGGTGCCTTCTTGTTTATGCTCAG
CAAAGACATTGTGAGTGGATCGAGCACCTTCAAGCCGGCGAAGTGGGGGA
CCTTGCAAGATCGCCAGCACAGAGCCGTTTGTCGTTGGAAAGGAAGAGGC
CCCATCTTTGGTTCAGGCCCTGATTTGAGGGTGGGTCCAGGAAACCTTGT
AGTGGCACGTCGCAAAAGCTAG
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