mRNA_P-littoralis_Contig167.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig167.14.1
Unique NamemRNA_P-littoralis_Contig167.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig167.14.1 vs. uniprot
Match: D7FIV0_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV0_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 5.220e-12
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 MRKREAWGNDDEGQRGRGGTLIAVRGSDRAAFEEFVNMHFPGCESFLLDNVDF 159
            M+KREAW  DD G+ G    L+A++ +DRA FEEFVNM+FPGCESF++D+V F
Sbjct:  482 MKKREAWAGDD-GKMG-AAVLVAIKDADRAPFEEFVNMYFPGCESFIMDSVKF 532
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BLAST of mRNA_P-littoralis_Contig167.14.1 vs. uniprot
Match: D7FIX7_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX7_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 1.270e-5
Identity = 23/54 (42.59%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    7 KREAWGNDDEG----QRGRGGTLIAVRGSDRAAFEEFVNMHFPGCESFLLDNVD 156
            KR AW   +EG    ++ R    + ++  D AAFEEFV+M+FP CE+F++++VD
Sbjct:  466 KRAAWARSEEGPVRNEKRRVKPRVTIKAGDCAAFEEFVDMYFPCCETFMMEHVD 519
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BLAST of mRNA_P-littoralis_Contig167.14.1 vs. uniprot
Match: A0A6H5JQU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU4_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.280e-5
Identity = 23/52 (44.23%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    1 MRKREAWGNDDEGQRGRGGTLIAVRGSDRAAFEEFVNMHFPGCESFLLDNVD 156
            M  R +W   ++ Q+      + ++  DR AFEEFV M+FPGCES +LD VD
Sbjct:  358 MATRASWAGSEKSQQVNEKPRVTMKVGDRVAFEEFVGMNFPGCESCILDFVD 409
[Close]
BLAST of mRNA_P-littoralis_Contig167.14.1 vs. uniprot
Match: D7FIX8_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX8_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 1.580e-5
Identity = 21/51 (41.18%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 MRKREAWGNDDEGQRGRGGTLIAVRGSDRAAFEEFVNMHFPGCESFLLDNV 153
            M KR  W +D++ +       + ++  DR AFEEFV+M+F GCESF++++V
Sbjct:  109 MAKRVRWADDEKLEGMNETPRVTIKAGDRFAFEEFVDMYFKGCESFIMEHV 159
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BLAST of mRNA_P-littoralis_Contig167.14.1 vs. uniprot
Match: A0A6H5LAP0_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAP0_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 8.350e-5
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    7 KREAWGNDDEGQRGRGGTLIAVRGSDRAAFEEFVNMHFPGCESFLLDNV 153
            KR AW   +  Q G   T + ++  DR AFEEFV+M+F GCESF++ +V
Sbjct:  523 KRAAWAGGENLQ-GMKETRVTIKPGDRVAFEEFVDMYFKGCESFIMAHV 570
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig167.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FIV0_ECTSI5.220e-1260.38TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIX7_ECTSI1.270e-542.59BTB_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JQU4_9PHAE1.280e-544.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIX8_ECTSI1.580e-541.18BTB_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5LAP0_9PHAE8.350e-546.94TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig167contigP-littoralis_Contig167:48567..48731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_007680.1
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789805.9290447-CDS-P-littoralis_Contig167:48566..487311680789805.9290447-CDS-P-littoralis_Contig167:48566..48731Pylaiella littoralis U1_48CDSP-littoralis_Contig167 48567..48731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig167.14.1prot_P-littoralis_Contig167.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig167 48567..48731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig167.14.1

>prot_P-littoralis_Contig167.14.1 ID=prot_P-littoralis_Contig167.14.1|Name=mRNA_P-littoralis_Contig167.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
MRKREAWGNDDEGQRGRGGTLIAVRGSDRAAFEEFVNMHFPGCESFLLDN
VDFFN
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mRNA from alignment at P-littoralis_Contig167:48567..48731+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig167.14.1 ID=mRNA_P-littoralis_Contig167.14.1|Name=mRNA_P-littoralis_Contig167.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig167:48567..48731+ (Pylaiella littoralis U1_48)
ATGAGGAAGCGAGAGGCGTGGGGCAACGATGACGAGGGGCAGCGGGGGCG
GGGGGGGACTCTCATCGCCGTCAGAGGTTCTGATCGCGCGGCGTTCGAAG
AGTTCGTCAACATGCACTTCCCAGGCTGCGAGAGCTTTCTCCTGGACAAC
GTTGACTTTTTCAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig167:48567..48731+

>mRNA_P-littoralis_Contig167.14.1 ID=mRNA_P-littoralis_Contig167.14.1|Name=mRNA_P-littoralis_Contig167.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig167:48567..48731+ (Pylaiella littoralis U1_48)
ATGAGGAAGCGAGAGGCGTGGGGCAACGATGACGAGGGGCAGCGGGGGCG
GGGGGGGACTCTCATCGCCGTCAGAGGTTCTGATCGCGCGGCGTTCGAAG
AGTTCGTCAACATGCACTTCCCAGGCTGCGAGAGCTTTCTCCTGGACAAC
GTTGACTTTTTCAAC
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