mRNA_P-littoralis_Contig166.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig166.24.1
Unique NamemRNA_P-littoralis_Contig166.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig166.24.1 vs. uniprot
Match: D8LSI7_ECTSI (Rho-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI7_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.050e-23
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:   31 NDKLVQLKKEKRVLHIMLKNFEKDFKEKNGREVSCPEDIAPVEGEYQKYKMIKKRLAQLT 210
            NDKLVQLKKEKRVLH+MLKNFEK+FKEKNGREVSCPEDIAPVEGEYQKYKMIKKRLAQLT
Sbjct:  651 NDKLVQLKKEKRVLHVMLKNFEKEFKEKNGREVSCPEDIAPVEGEYQKYKMIKKRLAQLT 710
[Close]
BLAST of mRNA_P-littoralis_Contig166.24.1 vs. uniprot
Match: A0A6H5K4W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4W5_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 6.290e-23
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:   31 NDKLVQLKKEKRVLHIMLKNFEKDFKEKNGREVSCPEDIAPVEGEYQKYKMIKKRLAQLT 210
            NDKLVQL +EKRVLH+MLKNFEK+FKEKNGREV CP+DIAPVEGEYQKYKMIKKRLAQLT
Sbjct:  315 NDKLVQLNREKRVLHVMLKNFEKEFKEKNGREVGCPKDIAPVEGEYQKYKMIKKRLAQLT 374
[Close]
BLAST of mRNA_P-littoralis_Contig166.24.1 vs. uniprot
Match: A0A7S2UXR7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXR7_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 5.890e-16
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:   49 LKKEKRVLHIMLKNFEKDFKEKNGREVSCPEDIAPVEGEYQKYKMIKKRLAQLTN 213
            LK +KR LHIMLKN+E+ FKEK+GREVSCPEDIAPVE EYQ+YK IK++L ++ N
Sbjct:   42 LKSDKRKLHIMLKNYERQFKEKHGREVSCPEDIAPVESEYQRYKEIKRQLIRIQN 96
[Close]
BLAST of mRNA_P-littoralis_Contig166.24.1 vs. uniprot
Match: A0A7R9U7W0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7W0_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.900e-9
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:   13 AGPVAV-NDK---LVQLKKEKRVLHIMLKNFEKDFKEKNGREVSCPEDIAPVEGEYQKYKMIKKRLA 201
            A P+ V ND+   LV L+KE+++LH +L+ FE+DFK +NGR+VSC EDIAPV  EY KYK IKK L+
Sbjct:  422 ANPIIVFNDRHISLVDLRKERKILHRVLRQFEEDFKFRNGRDVSCAEDIAPVAQEYTKYKEIKKILS 488
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig166.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSI7_ECTSI1.050e-2396.67Rho-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5K4W5_9PHAE6.290e-2390.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2UXR7_9STRA5.890e-1670.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9U7W0_9STRA1.900e-958.21Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig166contigP-littoralis_Contig166:137903..141403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LSI7
Model size2675
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Evalue3.45e-21
EggNOG OGs2E3C3@1|root,2SAFP@2759|Eukaryota
Cds size144
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789802.0507052-UTR-P-littoralis_Contig166:137902..1398041680789802.0507052-UTR-P-littoralis_Contig166:137902..139804Pylaiella littoralis U1_48UTRP-littoralis_Contig166 137903..139804 -
1680789802.0670455-UTR-P-littoralis_Contig166:139813..1403641680789802.0670455-UTR-P-littoralis_Contig166:139813..140364Pylaiella littoralis U1_48UTRP-littoralis_Contig166 139814..140364 -
1680789802.0933971-UTR-P-littoralis_Contig166:141325..1414031680789802.0933971-UTR-P-littoralis_Contig166:141325..141403Pylaiella littoralis U1_48UTRP-littoralis_Contig166 141326..141403 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789802.075812-CDS-P-littoralis_Contig166:140364..1404601680789802.075812-CDS-P-littoralis_Contig166:140364..140460Pylaiella littoralis U1_48CDSP-littoralis_Contig166 140365..140460 -
1680789802.084264-CDS-P-littoralis_Contig166:141277..1413251680789802.084264-CDS-P-littoralis_Contig166:141277..141325Pylaiella littoralis U1_48CDSP-littoralis_Contig166 141278..141325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig166.24.1prot_P-littoralis_Contig166.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig166 140365..141325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig166.24.1

>prot_P-littoralis_Contig166.24.1 ID=prot_P-littoralis_Contig166.24.1|Name=mRNA_P-littoralis_Contig166.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=48bp
MLKNFEKDFKEKNGREVSCPEDIAPVEGEYQKYKMIKKRLAQLTNGS*
back to top

mRNA from alignment at P-littoralis_Contig166:137903..141403-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig166.24.1 ID=mRNA_P-littoralis_Contig166.24.1|Name=mRNA_P-littoralis_Contig166.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3501bp|location=Sequence derived from alignment at P-littoralis_Contig166:137903..141403- (Pylaiella littoralis U1_48)
GCGGGGGCGGGCGCGGGGCCTGTGGCGGTGAACGATAAGCTGGTGCAGCT
CAAGAAGGAGAAACGAGTGCTGCACATCATGCTGAAGAATTTCGAGAAGG
ATTTCAAGGAGAAGAACGGCCGTGAGGTGAGGGCAAGGGTTGGGGGGCGA
GGGACGGGGGGTGGGTTCGGTGTTTTTCAGGGACACCTGTTCTCGTGTGC
ACGGAACGTGAGTTGGCTGAAGCTTCGACTTGGTGTTGCCGTTGCAGGAA
TGTTTCCACTGCTGAAGAATACAGACGGGCCGCGCTAGGAGAGGACGGGG
GGGGGGGGGGCTTGAATGCACGCGCCGTTTATATTTTCGGCGATCGTGAC
TCGTAATGTTGGTACTCGGGGTGAGGGCCATGCGCGTTGACGCGTGCGTG
TCTTGCTTCCCTCTGCTCTCGGTTGTAGGGTTCTTTCTCAATTTTTGACG
TCTTGATAGCCGACGATGCCGGCAAATATGCGACCGATTTCTAGCCTCGC
GTAAAACGTCACGTGTTCCGTGGCGATCGGGTAGATTGTAGAACCCTCAC
GTAGCACACCGACACGAGGAGCTAAACCTGTTTTTCGGTGGTCCAGAAAG
AATCAGCAGGAGCAGGAGCAGCAGCAGTGACACTAGCGGTGGCGGTAGCT
TTGTTCGGCCAGTGTTTTAGTTTTTCCCATACATGCCTATGCCGTAACTT
AGCCGAACGGCCCATAAGATAAATGTAACCACGCCTATGTCCGTTTTGCG
CGCGCTTCTTTTCGGGTACGATTGAACCAAAACTGAAAGCCTGTTGTTGT
TGTTGTCGTGTTGTCAAGCTCGGTACCAAACCAATCCAAGCACACCCTGT
TGTGCACTGCTGTGCTGTGATGCGCTCCTACTTCATGCTACTGTCCGTCA
TCGTTTTATTTTTGCAAAACTCGAAACCGCAACAACGTAACAGGTGAGCT
GTCCGGAAGACATCGCTCCGGTGGAAGGAGAATACCAAAAGTACAAGATG
ATAAAAAAGCGACTGGCTCAGCTAACCAACGGGTCGTGAACGCAACGCTG
CTCGGCCGGGTGGACGTTGTTTTTGTTTCTATCACGGCGAGGCCATGCCC
GAGGAGACCCCGATGGTGGCATTTTTTCCAGGCGACGGGTTGATAAAGAG
AGAGAGGGGAGAGCGAGGGAGCGAGAGAAAGAAAAGAGAAATAGAGCAGG
CGAGAACGAACGCCCGGTGGGGTTTCCGCCAGGCCGTTGCCATCATGCCA
TCATGCCCTTTGCAGCAGGCGATCGACCTTGCTGCAACTTTTTTATGGAG
GGCTTGGTTTGATTGACTGGGCGGTCGACGCAATGCTTTTCGAGGAAGTG
GTCCACGCCGGCCGCCTTGGCTCATGTCATTTGCACCAATTTGTCTTTGA
GAATAATATGGTGTGGTTTTTTCAGGCTGTGTGTGTTGAGGGCAAGAGAT
GATTCGATCGACGCTATACTTCGGGGACATGGGGATAGATAAGCTTTTCG
TTTCAGTGCCGGTATTACACGGGACATGGGGGTTTATGAGCTTCTCGTTT
CAGCGCCGGTATTACACGAGCTCTCTTTCTCTCTCTCTCTCTCTCTCACT
CCCTCTCTCTCTTTTTGTTCAGTGTTTGTTCAGTGAATGCGAAAGGGCGG
CAACACCATGTACCACTATTTTTTTGTGCAAAGCTCTTATTGCACACCTT
GCGGGGTTAATGGCAGAGGAGCATGAGAGAGAGGGGGGTCGATGCATCTA
TCCATGTAGTATCCGGGTACCACCGCGGCACCCCCAACCCGTTCGTGGAC
GTGGCGGTTCGGTTTGTTGGTCGGTGACCGAGGAGCACAGGTCATACGGT
AAGCTTCACACACACAAGAGTGTCAAGAGAGAGAGGGGGGGGAGAGAGAG
AAAGAGACAGTCGCAGTGCACAGATAGGCAGGTGTGGTTTGTTTACCAAG
CTCAGGCGATACTTGGACGCTAGGTTCATTGTTGCGTTGTGGTGCTTGCT
TTTTTCCCCTCTCTCGCGCCTCACGCGTTTTATTGACCCTTTTTTCTTAC
GGGTTTGTGAAACTGTGAAGAGAGGACATGATGCTGGAGACAAGACAGGC
AGACAGACGGACAGACGGACAGACGGACGGACCGTCAGGTCACGCATCTT
GCTTGCTGTGCGTGCGCGTGCGTTATTTTTTCGCTTGTTGCGTGCGTGTG
CGTGTGCGTGTGCGCGTGCGTGTGCGCGTGTGTGCGTGTGTTTTGTGTCA
AGTGCCTTTAAATTGACCCCCACGACCGGAATCTGTCCTCGTTCCAAAGG
AGGGAGCGGCGGGGGAGCAGGGGGTGAGACGAGTTTTTCCAGCAGCTCTG
GAATGCATGGTTGTTTTTTGGCGAAAAAGTCTCGTGTGTCTTACTTATCA
CCTACCTGGTACTCGTGAAGTGTAGTGTCATGCGCCCCATGCGCGGATGC
GAGATATTTCCGGTCAGGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTA
TTTGTTCTGCTCTGTTTGATTGCCTTTCTCTTGTTAGTCCTCCCGCCAGA
GTGGAGTCGAGTCGAGGGCCCGTGTGTTGGTGGTGGATAGAAAAGGGGGC
GTCTTCATCGAGCGTCCGTATCAGGTCCTGTGTGTCATGAACTAGCCGAG
ACAAACAGTCACCTCCCCCCCCCACCCTATCTTAATTCAAATCATTGGTC
GGTTTGGGGGTCGCTAGATTTGTTTTGTCTCTCCCTCGAGGCGTGTTGGG
TAGACATGGTGGTACCGTCGATCCGGGGCGTTTGTTGCATGCTGACATAA
CTCAGCGGATCGTTCCGTTGTATCTGTGTTGATTTTGGCGGCCTCGTCGA
TATGAACTCTTAACTCAGCAGGTGTTCGTTCTTTCGATGTTGGTTTTGAC
GCGTTTTTTTTTTCTTCTTTTTTTGAAAGGGGGTGGTAGGAGGGGTGGTC
AGGGTGAACAACATTTGTAGAGGAACAGCATCATATTTGTTGGAGTGCGC
GTTGCTTTGGATCGTTGATTGCTGCTTGCTCTGGGAGGAAAACGACAAAC
TCTCGTATCCTCTCCTGGCAAGTATGTTTGAAGCAAAGGGCCAGGTCAAG
GACACACACACACACGTTCACACACACGTACACCCGTACACCCCACCTGG
ACTGGCTGAAACGACGCATTCAGTGATGCCACCAAACTCGCAGGAATACC
TCGCGTTCGACATTTTTTCGTTTTCTTAGTAGGTTATCGACCCAGTACTG
ATTCTACCTGGCTGGTACAAGAGTAGCAAACGTGTGTGATTTTAGGGTAG
GGAGTTGGGGGGAACCGAAGCACATATCATATCGGATCACATGTATTCCG
GAACGGCAGCATGATTTTCCCATTTTGATGATGGATGTTTGCCGTTTCGT
ACCTTTTTTGGTTGATTTAGCAAGTGGGAGGGCACAGAGCGTTACGTGCC
CTGGTGTAGAAATAAATGGTGGGGGGTCCCGCAGAGAGTAAATGTGGAGG
A
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig166:137903..141403-

>mRNA_P-littoralis_Contig166.24.1 ID=mRNA_P-littoralis_Contig166.24.1|Name=mRNA_P-littoralis_Contig166.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=144bp|location=Sequence derived from alignment at P-littoralis_Contig166:137903..141403- (Pylaiella littoralis U1_48)
ATGCTGAAGAATTTCGAGAAGGATTTCAAGGAGAAGAACGGCCGTGAGGT
GAGCTGTCCGGAAGACATCGCTCCGGTGGAAGGAGAATACCAAAAGTACA
AGATGATAAAAAAGCGACTGGCTCAGCTAACCAACGGGTCGTGA
back to top