mRNA_P-littoralis_Contig1653.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1653.1.1
Unique NamemRNA_P-littoralis_Contig1653.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1653.1.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.530e-40
Identity = 81/146 (55.48%), Postives = 102/146 (69.86%), Query Frame = 2
Query:   59 EGGLRGHFATWSPYRIADLHIKQLGFKEMPRPDVELTGVSGSSKLYQFMGISDQQE-SRGVGVGVQAAVENSAAIGGEKELLATPENWVVGQAFPSRLRA-SRKYELRVRQTSCYCSMCRVGAYEDCIPAIKYNTLVGMVKNRSGK 490
            +GG  GHF+TWSPYRI   HIK LG +E+PRP V+LTG+SGSSKLYQFMG   Q+E S GV V VQ        +GGE E++  P  W   ++    + A +++Y+LRVRQ SCYCS C VGAY+DC+PA KY  +VGMVK+ SGK
Sbjct:  751 DGG--GHFSTWSPYRIRRFHIKLLGHREIPRPFVDLTGISGSSKLYQFMGAEVQEEESSGVSVEVQKESGVPPLVGGENEVVVNPLRWQADESIVLTVPAVTKRYKLRVRQASCYCSKCSVGAYDDCVPAKKYEGMVGMVKDVSGK 894          
BLAST of mRNA_P-littoralis_Contig1653.1.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.840e-40
Identity = 81/146 (55.48%), Postives = 102/146 (69.86%), Query Frame = 2
Query:   59 EGGLRGHFATWSPYRIADLHIKQLGFKEMPRPDVELTGVSGSSKLYQFMGISDQQE-SRGVGVGVQAAVENSAAIGGEKELLATPENWVVGQAFPSRLRA-SRKYELRVRQTSCYCSMCRVGAYEDCIPAIKYNTLVGMVKNRSGK 490
            +GG  GHF+TWSPYRI   HIK LG +E+PRP V+LTG+SGSSKLYQFMG   Q+E S GV V VQ        +GGE E++  P  W   ++    + A +++Y+LRVRQ SCYCS C VGAY+DC+PA KY  +VGMVK+ SGK
Sbjct: 1375 DGG--GHFSTWSPYRIRRFHIKLLGHREIPRPFVDLTGISGSSKLYQFMGAEVQEEESSGVSVEVQKESGVPPLVGGENEVVVNPLRWQADESIVLTVPAVTKRYKLRVRQASCYCSKCSVGAYDDCVPAKKYEGMVGMVKDVSGK 1518          
BLAST of mRNA_P-littoralis_Contig1653.1.1 vs. uniprot
Match: A0A6H5J993_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J993_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.410e-39
Identity = 77/146 (52.74%), Postives = 103/146 (70.55%), Query Frame = 2
Query:   59 EGGLRGHFATWSPYRIADLHIKQLGFKEMPRPDVELTGVSGSSKLYQFMGISDQQESRGVGVGVQAAVENSAA-IGGEKELLATPENWVVGQAFPSRLRA-SRKYELRVRQTSCYCSMCRVGAYEDCIPAIKYNTLVGMVKNRSGK 490
            +GG  GHF++WSPYR    HIK LG++E+ RP V+LTG+SGSSK +QFMG ++ QE    GVGV+  +EN    +GGEKE++A P+ W   ++    L A +++Y+LRVRQ SC+ S C VGAY DC+PA KY  +VGMVK  SGK
Sbjct:  159 DGG--GHFSSWSPYRTKRFHIKLLGYREITRPFVDLTGISGSSKQHQFMG-AEVQEEESSGVGVEVQLENDVPLVGGEKEVVANPQRWQADESTVLTLLAVTKRYKLRVRQASCHRSKCSVGAYNDCVPAKKYAGMVGMVKAVSGK 301          
BLAST of mRNA_P-littoralis_Contig1653.1.1 vs. uniprot
Match: A0A6H5KXK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK6_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 2.300e-37
Identity = 81/180 (45.00%), Postives = 111/180 (61.67%), Query Frame = 2
Query:   59 EGGLRGHFATWSPYRIADLHIKQLGFKEMPRPDVELTGVSGSSKLYQFMGISDQQE-SRGVGVGVQAAVENSAAIGGEKELLATPENWVVGQAFPSRLRA-SRKYELRVRQTSCYCSMCRVGAYEDCIPAIK-YNTLVGMVKNRSGKENPILESRSEDDPFVPPHTFVQF*YDACMLSKC 589
            +GG  GHF++WSPYRI   HIK LG +E+PRP V+LTG+SGSSKLYQFMG   Q+E S GVGV VQ   +  + +GGEKE++  P+ W   ++    L A +++Y+LRVRQ SCYCS C VGAY+DC+P +     +V   +     E+ +L       P V     ++    +C  SKC
Sbjct:  148 DGG--GHFSSWSPYRIKRFHIKLLGHREIPRPFVDLTGISGSSKLYQFMGAEVQEEESSGVGVEVQKE-DGVSLVGGEKEVVVNPQRWQADESTVLTLPAVTKRYKLRVRQASCYCSKCSVGAYDDCVPLVGGEKEVVANPQRWQADESTVLTL-----PAVTKRYKLRVRQASCYCSKC 319          
BLAST of mRNA_P-littoralis_Contig1653.1.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 2.000e-35
Identity = 73/132 (55.30%), Postives = 95/132 (71.97%), Query Frame = 2
Query:   59 EGGLRGHFATWSPYRIADLHIKQLGFKEMPRPDVELTGVSGSSKLYQFMGISDQQESRGVGVGVQAAVENSAA-IGGEKELLATPENWVVGQAFPSRL-RASRKYELRVRQTSCYCSMCRVGAYEDCIPAIK 448
            +GG  GHF++WSPYRI   HIK LG +E+PRP V+LTG+SGSSKLYQFMG ++ QE    GVGV+   EN    +GGEKE++A P+ W   ++    L   +++Y+LRVRQ SCYCS C VGAY+DC+PA K
Sbjct:  485 DGG--GHFSSWSPYRIKRFHIKLLGHREIPRPFVDLTGISGSSKLYQFMG-AEVQEEESSGVGVEVQTENGVPLVGGEKEVVANPQRWQADESTVLTLPTVTKRYKLRVRQASCYCS-CSVGAYDDCVPAKK 612          
BLAST of mRNA_P-littoralis_Contig1653.1.1 vs. uniprot
Match: A0A6H5KR28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR28_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.990e-33
Identity = 74/139 (53.24%), Postives = 86/139 (61.87%), Query Frame = 2
Query:   74 GHFATWSPYRIADLHIKQLGFKEMPRPDVELTGVSGSSKLYQFMGISDQQESRGVGVGVQAAVENSAAIGGEKELLATPENWVVGQAFPSRLRASRKYELRVRQTSCYCSMCRVGAYEDCIPAIKYNTLVGMVKNRSGK 490
            GHF+TW PYRI   HIK LG +E+PRP V+LTG+SGSSKLYQFMG   QQE    GVGV+A          E  +L  P               +++YELRVRQ SC CS C VGAY+DC PA KY  +VGMVK  SGK
Sbjct:  151 GHFSTWFPYRIKSFHIKLLGHREIPRPIVDLTGISGSSKLYQFMGAEVQQEESS-GVGVEAD---------ESIVLTLPA-------------VTKRYELRVRQASCCCSKCSVGAYDDCFPARKYAGVVGMVKAVSGK 266          
BLAST of mRNA_P-littoralis_Contig1653.1.1 vs. uniprot
Match: A0A6H5KXG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG9_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 3.410e-33
Identity = 72/133 (54.14%), Postives = 90/133 (67.67%), Query Frame = 2
Query:   59 EGGLRGHFATWSPYRIADLHIKQLGFKEMPRPDVELTGVSGSSKLYQFMGISDQQE-SRGVGVGVQAAVENSAAIGGEKELLATPENWVVGQAFPSRLRA-SRKYELRVRQTSCYCSMCRVGAYEDCIPAIKY 451
            +GG  GHF+TWSPYRI   HIK LG +E+PRP V+LTG+SGSSKLYQFMG   Q+E S GV V VQ           E  ++A P+ W   ++    L A +++Y+LRVRQ SCYCS C VGAY+DC+PA KY
Sbjct:  493 DGG--GHFSTWSPYRIRRFHIKLLGHREIPRPFVDLTGISGSSKLYQFMGAEVQEEESSGVSVEVQK----------ESGVVANPQRWQADESIVRTLPAVTKRYKLRVRQASCYCSKCSVGAYDDCVPAKKY 613          
BLAST of mRNA_P-littoralis_Contig1653.1.1 vs. uniprot
Match: A0A6H5JJA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA7_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 8.000e-32
Identity = 64/140 (45.71%), Postives = 87/140 (62.14%), Query Frame = 2
Query:   74 GHFATWSPYRIADLHIKQLGFKEMPRPDVELTGVSGSSKLYQFMGISDQQESRGVGVGVQAAVENSAAIGGEKELLATPENWVVGQAFPSRLRASRKYELRVRQTSCYCSMCRVGAYEDCIPAIKYNTLVGMVKNRSGKE 493
            G    WSPY+IA+  ++ +G  E+PRP V+LTG+ GSSKLYQFMG  +Q++     +GV+ A      + G +     PE  VVG A P   + +RKY  RVR+ SCYCS CRVG+Y DC+ A  Y  +VG V  +SGK+
Sbjct:   34 GCLGKWSPYKIANFKMELIGANEIPRPRVDLTGIPGSSKLYQFMGAENQEQRLRSSLGVEPADSGVVVVAGNEHANPGPE--VVGPA-PRPEKVTRKYTCRVRKASCYCSKCRVGSYPDCMVAKNYPEIVGKVHEKSGKD 170          
BLAST of mRNA_P-littoralis_Contig1653.1.1 vs. uniprot
Match: A0A6H5JJU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU0_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.190e-25
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 2
Query:  158 VELTGVSGSSKLYQFMGISDQQESRGVGVGVQAAVENSAAI-GGEKELLATPENWVVGQAFPSRLRA-SRKYELRVRQTSCYCSMCRVGAYEDCIPAIKYNTLVGMV 472
            ++LTG+SGSSKLYQFMG ++ QE    GVGV+   EN   + GGEKE++A P+ W   ++    L A +++Y+LRVRQ SCYCS C VGAY+DC+PA KY   V  V
Sbjct:  112 LDLTGISGSSKLYQFMG-AEVQEEESSGVGVEVQTENGVPLEGGEKEVVANPQRWQADESTVLTLPAVTKRYKLRVRQASCYCSKCSVGAYDDCVPAKKYAGTVATV 217          
BLAST of mRNA_P-littoralis_Contig1653.1.1 vs. uniprot
Match: A0A6H5KM72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM72_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.620e-22
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  155 DVELTGVSGSSKLYQFMGISDQQESRGVGVGVQAAVENSAAIGGEKELLATPENWVVGQAFPSRLRASRKYELRVRQTSCYCSMCRVGAYEDCIPAIKYNTLVGMVKNRSGK 490
            D +LTG+SGSSKLYQFMG ++ QE    GVGV+   EN   +  +  +L  P               +++Y+LRVRQ SCYCS C VGAY+DC+PA KY  +VGMVK  SGK
Sbjct:  319 DSDLTGISGSSKLYQFMG-AEVQEEESSGVGVEVQKENGVLLADKSTVLTLPA-------------VTKRYKLRVRQASCYCSKCSVGAYDDCVPAKKYAGMVGMVKAVSGK 416          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1653.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KT99_9PHAE2.530e-4055.48Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE2.840e-4055.48MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5J993_9PHAE1.410e-3952.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXK6_9PHAE2.300e-3745.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K491_9PHAE2.000e-3555.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR28_9PHAE2.990e-3353.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXG9_9PHAE3.410e-3354.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJA7_9PHAE8.000e-3245.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJU0_9PHAE4.190e-2552.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM72_9PHAE4.620e-2249.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1653contigP-littoralis_Contig1653:700..1310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size611
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789801.3741124-UTR-P-littoralis_Contig1653:699..7481680789801.3741124-UTR-P-littoralis_Contig1653:699..748Pylaiella littoralis U1_48UTRP-littoralis_Contig1653 700..748 -
1680789801.3940947-UTR-P-littoralis_Contig1653:1168..13101680789801.3940947-UTR-P-littoralis_Contig1653:1168..1310Pylaiella littoralis U1_48UTRP-littoralis_Contig1653 1169..1310 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789801.3851616-CDS-P-littoralis_Contig1653:748..11681680789801.3851616-CDS-P-littoralis_Contig1653:748..1168Pylaiella littoralis U1_48CDSP-littoralis_Contig1653 749..1168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1653.1.1prot_P-littoralis_Contig1653.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1653 749..1168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1653.1.1

>prot_P-littoralis_Contig1653.1.1 ID=prot_P-littoralis_Contig1653.1.1|Name=mRNA_P-littoralis_Contig1653.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MPRPDVELTGVSGSSKLYQFMGISDQQESRGVGVGVQAAVENSAAIGGEK
ELLATPENWVVGQAFPSRLRASRKYELRVRQTSCYCSMCRVGAYEDCIPA
IKYNTLVGMVKNRSGKENPILESRSEDDPFVPPHTFVQF*
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mRNA from alignment at P-littoralis_Contig1653:700..1310-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1653.1.1 ID=mRNA_P-littoralis_Contig1653.1.1|Name=mRNA_P-littoralis_Contig1653.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=611bp|location=Sequence derived from alignment at P-littoralis_Contig1653:700..1310- (Pylaiella littoralis U1_48)
GCCAGCGCATCCACGACACGGACGCGGTGCACAAGTTTCTTTCGGAGTAT GCCGATGCGAAGGGGGGCTTAGAGGGCACTTCGCAACCTGGTCTCCCTAC AGGATCGCGGACCTCCACATCAAGCAGCTTGGATTTAAAGAGATGCCTCG CCCGGATGTAGAGTTGACGGGCGTATCTGGCAGTTCCAAGTTGTATCAGT TCATGGGGATATCGGACCAGCAGGAGAGTCGGGGTGTTGGCGTAGGTGTG CAGGCAGCAGTAGAAAACAGTGCCGCCATTGGCGGGGAGAAGGAACTACT GGCTACCCCCGAAAACTGGGTGGTGGGTCAGGCTTTTCCTTCACGCCTCA GGGCTTCGAGAAAGTACGAGCTTCGTGTTCGCCAGACATCGTGTTACTGT TCGATGTGCAGGGTAGGAGCGTACGAGGACTGCATCCCAGCCATAAAGTA TAACACGTTGGTAGGCATGGTGAAGAACAGATCGGGGAAGGAGAATCCGA TTCTAGAATCGCGTTCGGAAGACGACCCTTTCGTGCCACCGCACACATTT GTTCAGTTTTAATATGATGCTTGTATGTTGTCAAAATGTCGTTTTCAAAC ACGGTTCCGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1653:700..1310-

>mRNA_P-littoralis_Contig1653.1.1 ID=mRNA_P-littoralis_Contig1653.1.1|Name=mRNA_P-littoralis_Contig1653.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig1653:700..1310- (Pylaiella littoralis U1_48)
ATGCCTCGCCCGGATGTAGAGTTGACGGGCGTATCTGGCAGTTCCAAGTT
GTATCAGTTCATGGGGATATCGGACCAGCAGGAGAGTCGGGGTGTTGGCG
TAGGTGTGCAGGCAGCAGTAGAAAACAGTGCCGCCATTGGCGGGGAGAAG
GAACTACTGGCTACCCCCGAAAACTGGGTGGTGGGTCAGGCTTTTCCTTC
ACGCCTCAGGGCTTCGAGAAAGTACGAGCTTCGTGTTCGCCAGACATCGT
GTTACTGTTCGATGTGCAGGGTAGGAGCGTACGAGGACTGCATCCCAGCC
ATAAAGTATAACACGTTGGTAGGCATGGTGAAGAACAGATCGGGGAAGGA
GAATCCGATTCTAGAATCGCGTTCGGAAGACGACCCTTTCGTGCCACCGC
ACACATTTGTTCAGTTTTAA
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