mRNA_P-littoralis_Contig164.64.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig164.64.1
Unique NamemRNA_P-littoralis_Contig164.64.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig164.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig164contigP-littoralis_Contig164:317151..321373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size242
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789790.6756768-UTR-P-littoralis_Contig164:317150..3172251680789790.6756768-UTR-P-littoralis_Contig164:317150..317225Pylaiella littoralis U1_48UTRP-littoralis_Contig164 317151..317225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789790.6873581-CDS-P-littoralis_Contig164:317225..3172291680789790.6873581-CDS-P-littoralis_Contig164:317225..317229Pylaiella littoralis U1_48CDSP-littoralis_Contig164 317226..317229 -
1680789790.7046912-CDS-P-littoralis_Contig164:321212..3213731680789790.7046912-CDS-P-littoralis_Contig164:321212..321373Pylaiella littoralis U1_48CDSP-littoralis_Contig164 321213..321373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig164.64.1prot_P-littoralis_Contig164.64.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig164 317226..321373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig164.64.1

>prot_P-littoralis_Contig164.64.1 ID=prot_P-littoralis_Contig164.64.1|Name=mRNA_P-littoralis_Contig164.64.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
RDDEIAGEDAVDEDRSAAAQEKETYASGGIAREHEMRKAAAAGEEVTDKV
RQKV*
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mRNA from alignment at P-littoralis_Contig164:317151..321373-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig164.64.1 ID=mRNA_P-littoralis_Contig164.64.1|Name=mRNA_P-littoralis_Contig164.64.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4223bp|location=Sequence derived from alignment at P-littoralis_Contig164:317151..321373- (Pylaiella littoralis U1_48)
AGAGACGATGAGATTGCTGGAGAGGATGCCGTAGATGAGGATCGCAGTGC
CGCTGCTCAGGAGAAGGAGACGTACGCGTCTGGCGGTATCGCCAGAGAGC
ACGAGATGAGGAAGGCCGCTGCTGCTGGGGAGGAAGTGACCGATAAAGTT
CGCCAAAAGGTGCAGTCCTTTTCGAAATGGTTCATTTTTTGTGTATGATT
GATAAGTCTGTCCCGCGTTGGCAATGGTTCGTGTCCGTAATTCGGTTAAT
TGTAGAGCTTTCCCTCTAATTTCAAGTACTTGTAGTAAGCGAGAGACAGC
GAGAGACATTGCCGCATGATAAAGATAGTAAGATACGACACCCGCTGAAG
CGATTTAAAATCACAGATACTCCACAACGAAGAGAGTATCACCATAAAAA
AATACATTTACTCTCGACGAAACGTCTCTAATGCGCCCTTCTCGGCACCG
ACACATGTAATGAATCGTGCTTTGTGAATCGGTCCAAGGGGGTCCGTCGT
ATCTTACGGCACCCACGGAACACACGCGTCACGCCGCCACACACACCACG
CTGTAGAGCTGTATTCTGCTGTACAGTTGTATTCTACTTACTGCTGCTGC
TTGACTGCTGCTGGTGTACTGCTGGTGCTGCTGCGCTGCTCTTGCTGCTG
TACTGCTGCTGCTGCTACTTCGCTGCTGTTGCTGCTGCTGAGATGTGTAA
TGGTGTATCATCTCGAATCATACTTTCACTCGAGACGGAAAGCATAGCAG
TGGCACAGTTACAACAGCACAAGAACAGAAGAACAGCAAGATAAGAGCGT
TGTGTGTGCGGCAGGCTGCGGCGTGATGTGTAAATTCTGTGATGCGATAT
TTTAATAGGAAAACAAGTCATATTATCATCACCTACAGGCGTCAACAACA
GTAGTACAGCCGACCGTGGGAACGGACTGTAGACATGCTCGTAACGCTGG
TGTGGTGTCGCTGGCGTAGGGGTGAAAGGCTCGGGGGAAGTAGCATCCAG
GGCTGACAATGTCGTGAGGGAAGCAGCGGCAGGTGGGCGGACTGCTGCTG
CCGTTGAGCGTGCTGCCAAGGGCAAACAACCTGCAAGGGGTGGGAAGCTT
TCGAAGGAGTGAGTCCGTGTAACCTTTTTTTTTTGACTGTTTTTGTTTTT
TTTTGTTAGATAGAGAACAGTTAAAACTTCGCATTTGTGGAGTTGTTTTT
TCTGTTGTTGTGGATAGACACAATAACATTGTTGTGTTATTTAGTTCTTG
TGGATAAATACGTCGTGTCTAGTTGTCAACTGTTGCAAAAGGTTTGTGAG
TCGATTTGGTGTTGCTCAAGTTAAGCATTACGAGATCAAAGTTCAAATTT
CTTGCCAATCCAGCCGCATGCCGCATGCGGAGAAACCAGCACACCTGTGC
TGCTTTGGGTGTTTCTTTTTTTTTCAATACCGACAAAAGCTTTGGGCGGG
TACCACTTGACGAAACCCTGAGCCCCTCTCAGATTTGTGACTTTGTGCTG
CGAACACCATTCAGGGTCATGACCTTTGTCGCCAGCAGTACTCCTCACAC
AGACCCCAGCTTGCTACAATATTGACAGGAGGTCTCAAGAGGGTCGTGTT
CTACCTTCTCCAATAGCTTTTATGCTATGGTTTTGCTCCAAACTGCAGAT
ATGCTGCGACATCGCAACTGGAAGCAAGCCGTTTTTCTGTGCGTCTGGAG
CTCGTTTTTAGTTCTCGGGCGACAAACTTTGCGCCAAGGTTGTGACCTGG
TAGAACAACCAAATGGGCTGAAACTCGCAGGGTGTACACCTTGGTCGGTG
TACTACCCAAAAAAAGTTGACGAAATTTGGGATAAGCACCACAGCGCTGA
CAAAAAGCTTGCAAAAGTTCCCTAAAATCGACCAAAACCAGTCTAAACTC
CAGTGGTTACAGGTTGAACATTCCTTAAACGAGAACAACAAAATGTCTAC
CTCCAAAACTTTATCCAAAATTTCATCGTTTGGTGCTCAAAAAAAACTTT
AGATCAAGGTTGTGACCTGGAAGAAAACCAAAATGGGCTGAAACTCACAG
AGTAGCTTGGTCGATGCACTACCCAAAAAATGTTGGCATAATTCGGGATC
GGCACTACACCTGGCGAACCAGCTGATAATGAGTGATGTGTCACAGGAAA
ATCGGGGTTGGGGGCTCCGTGCAATGACAACTTTTGTCGCTATAAAAAAA
AAATGACGATTTTTCTCTAGGCAGCAGCACATGTGAGCAGCCGACTGGAC
GTTTGAGACCACTGGCTTCCCACTTTCGCCACCAAGAAGATGCCTGCATG
ATGCTTATGACGCATAGAAAGTTATACTCCGTATCTGCTATCTCATGCAA
CTTGTTTTAAAACATTCTGAGCTCTCAACAGGATAAGCATGTGTGTGTGT
TGTCATCTCTTTCATTGGACGCCACACTGCACCTTTCGGGCCTTTCGGGC
CTTTCGGGTAGGTAGACGCTCCAACCGGGGTCACACAGGGGGAAGTCAAC
ACAGGAGTTTTTTTTTTTTTTCTCCACTTCACTTTGCGGTGCTTGCCTTT
TTGGTTGAGCTTTTACCGCGAGAAAGGGGACATCAATCCCTTTCCTTCGT
CATCGAATTTGGTTTACTCACGAATTGATCGCTTTCCACTTTCGCGCGCA
ATGTGATGGACATGAGAAATAGATTTGTATATACGGAGTATCAAATGTCG
GACAAAAGGCAGGGTTCTGTTGTCGTGTGGGAAACATGTGCGTGGCAGCT
TGCTGCAAAATAATCTTATATTGGCCCAACCTTGGACGAATCACCGCGAG
TCCACTGATGTTGTGGCTCAGGATCTCGCCTTATGCACCACAACAGGAAC
TAGCTATTGTAATGCGGGTACAATGAGATGCACGTCTATTCAAGTTCAAT
ATCAGCACGACATCTCGTGCTTTGTTTAACGCAAACAAGGAGCCACAGTG
GTTGCGGTGCCATCCCGGCCCAAGCGTGTGTGTCGCTGTAGTCCTTAATT
GTTTTTGGTGTTTATGCGTCGATACCGTTAATTGTCCATTCAGGTCGAAA
TTGATGATATTTGATATCCCCGAGCTCGATCGAGCTGCTGCTACAGGGTC
TTGAATGACAAAATAAAAAAGGGGGCGACGAGACAGAAGGTGTTTTCCAT
CCCGTCCGAAAATACCACAACAAAAAAGGCGACCAACAAGACGGGAAGGC
CATCGGCGCTGAAGGATTCCGCCGCCAATGTCCGTATGGGGGGGGGGGGA
ATCCAAGTCGTTCCTGCTCAACGTTTGGGACCTTGTAAGCGCGACGGGAT
CGTTAGAGCCGGGGCAGGTGCTAGGGATGATGTCGGCGATCGGCACGACG
ACACCTTACTGCATGGCGAACGCATACAGGTGGCCACTGGGACACGTGAT
GGCAGCTTATTATTTTTCGCAGCGTAGAGAGGTTGTGAAGGGTTGTGGGG
TGGCTATGGGAGGACGGAATCGATCTGAAGCCTTTTTTTGTGTGCTGCCA
GCCCGCCCTGTTGGTTGCATCAAAAATATTAGTACTAATATTGTTGGCCC
CAAAGAAAAAATATAGGGTTCAGGTCGATTCCGTTCTCGCATAACCACCC
CCAACCTTCCACAACCTTCCTAGGTTGGGCCATATGCATAACCTGCGACA
ACATACCCCAGTGGCCACCTGTGCATCTGGAGGTACAAGTGGTACAGGAT
TTCCAAACGACCTCCACTGTGAAATGCGAATGCCCCGATAATTTCCGATG
TTGAGAGAGTTTTCGTGCGTCGTGGAGTAGAAAATAAAACGATTGGGTTG
CATATCAATTCGGGGTTGCTGTGTGCAGAATCGCACGTACAGGGCGACGG
CGACATCGTTAATTCCTATGCGTCTAGAGGTCTTTTACTTGTGCTCTTTT
CTCGCCTCAATTTCAGTGACCGCAGGGATGTATGAATAGGGACTACGAAA
AAAATCGATATTATATGGGAAATGGCCCAAGCCCTCATCTGGAATCATTT
CTACGTTAATATATACGAAGTTTATATTTCTATGATGAACCCACGCTTGA
TTTTATGTGAATATATATTTTTTCATTTTTATGATGAAACCACGCTTGCC
CTCATATCTCTTCCGCACACACCCCACCGGGCTTTTTGCAGGAGCTAAGC
ACGCCGACAAAGCCTAAGGTCCGTTGAAGTTTCTCGAGGATCATCCTCAG
GATGGGTTCGCCTACGACCAGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig164:317151..321373-

>mRNA_P-littoralis_Contig164.64.1 ID=mRNA_P-littoralis_Contig164.64.1|Name=mRNA_P-littoralis_Contig164.64.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig164:317151..321373- (Pylaiella littoralis U1_48)
AGAGACGATGAGATTGCTGGAGAGGATGCCGTAGATGAGGATCGCAGTGC
CGCTGCTCAGGAGAAGGAGACGTACGCGTCTGGCGGTATCGCCAGAGAGC
ACGAGATGAGGAAGGCCGCTGCTGCTGGGGAGGAAGTGACCGATAAAGTT
CGCCAAAAGGTCTAA
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