mRNA_P-littoralis_Contig163.68.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig163.68.1
Unique NamemRNA_P-littoralis_Contig163.68.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig163.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig163contigP-littoralis_Contig163:446634..447569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size376
Hectar predicted targeting categorymitochondrion
Exons2
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789785.0681586-UTR-P-littoralis_Contig163:446633..4466541680789785.0681586-UTR-P-littoralis_Contig163:446633..446654Pylaiella littoralis U1_48UTRP-littoralis_Contig163 446634..446654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789785.0771403-CDS-P-littoralis_Contig163:446654..4469431680789785.0771403-CDS-P-littoralis_Contig163:446654..446943Pylaiella littoralis U1_48CDSP-littoralis_Contig163 446655..446943 +
1680789785.0854309-CDS-P-littoralis_Contig163:447504..4475691680789785.0854309-CDS-P-littoralis_Contig163:447504..447569Pylaiella littoralis U1_48CDSP-littoralis_Contig163 447505..447569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig163.68.1prot_P-littoralis_Contig163.68.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig163 446655..447569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig163.68.1

>prot_P-littoralis_Contig163.68.1 ID=prot_P-littoralis_Contig163.68.1|Name=mRNA_P-littoralis_Contig163.68.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
MSRFCASKHTTYTRLATLVYPTTLSVTSPSKHPCVHQEPTRGTHRHPQHR
PQHSTPMSAILTKEECDAEYSKAMTGLRPQAAEFVPGQSWQCSGLTALPT
IEFDESRASVIHVGRATI
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mRNA from alignment at P-littoralis_Contig163:446634..447569+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig163.68.1 ID=mRNA_P-littoralis_Contig163.68.1|Name=mRNA_P-littoralis_Contig163.68.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=936bp|location=Sequence derived from alignment at P-littoralis_Contig163:446634..447569+ (Pylaiella littoralis U1_48)
CAGTTTTCGGGCGATCTCCTCATGTCGCGTTTTTGTGCCTCAAAACACAC
GACGTACACCCGCCTCGCAACCCTCGTCTATCCCACAACACTCTCTGTGA
CCTCGCCATCAAAGCACCCGTGCGTTCACCAAGAGCCTACCCGAGGTACA
CACCGACATCCACAGCATCGCCCACAGCACAGCACGCCGATGTCGGCGAT
TCTCACCAAGGAAGAGTGCGACGCGGAGTACAGCAAGGCGATGACGGGCC
TTCGCCCCCAGGCCGCTGAATTCGTACCCGGACAGAGCTGGCAATGCTCC
GGACTCACTGGTGAGAGTGTACCATCGCTGCTACCAGTAGATGCGCCCGC
GAGGCACACGGGGGCTCCCAGCAGTGTAGCAGCTTTCGTTGCATGAGTAG
AGCAGCATACCGTGGGTAAAAACGGTTGACGAGAGGTCCCGTGGGAAAGA
GGTGGTGGCCGATATCGTTTTGATTCTCTACTCTCTGGCTTGCTCCCCTG
CGTCGTTACTGCCAGTATTCATATCATCGGAACTGCTGTAGCGTTCCGCT
TTGGGTGTTTTTGGCTCGTCCGTGAGGCGGTTGATGGACCACCCCATCGT
AGAGGACAGCACCCCTACAACTCTTCGCCTGCGCCTGTCACTTACAATCT
TCTGACCATTACCGCAGCCTCCTCTCTCTTGTCTTCCGCACTCGCTCGTC
GTCCACTCAGTCTGGCTTTCCTTCGTTGTCTTGTTTGTGTGCATCACATC
ATATGTTAGTACAGTAGGCAAATCATCATCATTCACTGCCAGAACTGCTG
CTGCTGCTGCTGCTAACGCAGTTTGTCCGCCCCCGCTCTTCACGCCCGGT
CATTCCTCTCTCTCCGCACAGCGTTGCCCACGATAGAGTTCGACGAAAGC
CGTGCTTCGGTAATACACGTCGGGAGGGCGACTATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig163:446634..447569+

>mRNA_P-littoralis_Contig163.68.1 ID=mRNA_P-littoralis_Contig163.68.1|Name=mRNA_P-littoralis_Contig163.68.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig163:446634..447569+ (Pylaiella littoralis U1_48)
ATGTCGCGTTTTTGTGCCTCAAAACACACGACGTACACCCGCCTCGCAAC
CCTCGTCTATCCCACAACACTCTCTGTGACCTCGCCATCAAAGCACCCGT
GCGTTCACCAAGAGCCTACCCGAGGTACACACCGACATCCACAGCATCGC
CCACAGCACAGCACGCCGATGTCGGCGATTCTCACCAAGGAAGAGTGCGA
CGCGGAGTACAGCAAGGCGATGACGGGCCTTCGCCCCCAGGCCGCTGAAT
TCGTACCCGGACAGAGCTGGCAATGCTCCGGACTCACTGCGTTGCCCACG
ATAGAGTTCGACGAAAGCCGTGCTTCGGTAATACACGTCGGGAGGGCGAC
TATC
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