mRNA_P-littoralis_Contig163.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig163.3.1
Unique NamemRNA_P-littoralis_Contig163.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig163.3.1 vs. uniprot
Match: A0A6H5JZ07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ07_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.220e-6
Identity = 20/32 (62.50%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:  193 WENAPRVDLVLRTYSNGLKIFWNVFFPTYLVS 288
            W+NAPRVDLV RT++ G+K FW++F P++LVS
Sbjct:   37 WKNAPRVDLVTRTFAGGVKAFWDIFLPSFLVS 68
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BLAST of mRNA_P-littoralis_Contig163.3.1 vs. uniprot
Match: D7FRJ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRJ7_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 3.670e-5
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:  193 WENAPRVDLVLRTYSNGLKIFWNVFFPTYLV 285
            W+NAPR+DLV RTY   ++IFW  F PTYL+
Sbjct:   52 WQNAPRIDLVCRTYGAAIQIFWQTFIPTYLM 82
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig163.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZ07_9PHAE3.220e-662.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRJ7_ECTSI3.670e-561.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig163contigP-littoralis_Contig163:17639..19910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size357
Hectar predicted targeting categoryother localisation
Exons2
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789784.9033625-CDS-P-littoralis_Contig163:17638..176691680789784.9033625-CDS-P-littoralis_Contig163:17638..17669Pylaiella littoralis U1_48CDSP-littoralis_Contig163 17639..17669 +
1680789784.9159641-CDS-P-littoralis_Contig163:19584..199101680789784.9159641-CDS-P-littoralis_Contig163:19584..19910Pylaiella littoralis U1_48CDSP-littoralis_Contig163 19585..19910 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig163.3.1prot_P-littoralis_Contig163.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig163 17639..19910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig163.3.1

>prot_P-littoralis_Contig163.3.1 ID=prot_P-littoralis_Contig163.3.1|Name=mRNA_P-littoralis_Contig163.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
VYQVTISRPGGIVPFEQEWNRRRVQVAHFSTKAADPVEEQRRYALEGATD
GQQQPFLQQPANDVWENAPRVDLVLRTYSNGLKIFWNVFFPTYLVSALLK
PMAAVQFHNPPVEVCGQV*
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mRNA from alignment at P-littoralis_Contig163:17639..19910+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig163.3.1 ID=mRNA_P-littoralis_Contig163.3.1|Name=mRNA_P-littoralis_Contig163.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2272bp|location=Sequence derived from alignment at P-littoralis_Contig163:17639..19910+ (Pylaiella littoralis U1_48)
GTCTACCAGGTGACCATCTCTAGGCCCGGAGGTATGTGTGTTGACAGGCT
GCATCTAGCGAAGTGGACGTTCAGTCATGTGTTTTGGCAGTCGTGGCGGT
GGAACGCCGTTCGAGCGTAAAAAGACCGCAAATCCCGCGAATAATATTGA
AGGGGAATTGATAAACGGTGGTACTCCCCCTCCCATTTCAGACGGCGTGG
AGGAATGTCAGCAACGCGGCGGGTGGCTCAAACCCCCCTGTACTCAGTTC
TGGCGCGTTTGACAGCACGGTCGGTGACCATGCCGGGCCTGTACGACAGC
GTCGGCGGTTTTTTGGCACGTTTTTTCGGCCCAGCAAGATATGTTCTCTT
TTCAGCCCTCCTGTGCATTCCTGGGCCTACAATCGGCGCACCCAGCATCA
AGGCCCCCACCGGTCCACCCGCACCCCCGTTTGTCCGATATCCGGGTGGG
ATATCCGGGGGGGGGGATATACCCCGACAACTCTACTTTTTTTTCATCTA
TTCCCCCCTTTTGTCCGCGTTTTCCCCCTCGTTTGTGCAAAAAGTATGCC
CCCCGTTTGTCCGAAGGCATCTCTCCGCTTGGAAGCCATCCGCTACACGT
CCACGTTGCTGCCAAGCTGCCCGAACGGACGAACGGCACAACATGAATTG
GCCGTGCGCGCGGAGACCACTGTCAACCGACTCTCAACGCTCACGCACGG
CACTTACTGTACAGATATCGGTTTCCCCGTAGTTTACAGTACTCCCTCCC
TCGATGCGCCACACACTCACAAGCACCAACACACCGGCACACACCGAAGA
GCGCGTGCTCCCGCTGCAGCAGCATATAACAGAGACTGCGGACCTACGTA
GTCTGGTGGCCTTGCCTTGCGTATACACGTGCGGTCATCCCTGTTGCCCT
CTCGCAATGTTCTCAAACAATATTTCGGGCGTGCGTGCGTGCGTGCGTGC
GTGCGTGCGTGCGTGCGTGCGTGCGTGGTGTGTGTGTGTGTGTTGCGCAC
CGAGCAAGGGAGTACTGCAAGCTGCAGGGTGATCGAAACAGGTGTCGGTT
TTGTGCCGTGCGTAGGGGCGTCTAGAGCCGGGTGACAGTGGGGTCTCCAC
GCATGCCATCCGGCCTTCTGCCGTGCGTCCGTTGGGGCCGCTAAGCGATG
ATGTGGATGCATTGCACATAGTTTTCAAGACTGACAGACGGCGGATAGAT
GCCTTCGGACAGAAGGGGGCATTCTGTTTGGATAAGAGGAGGGGGGGGGA
ACGTTGGACAAGCGGGGGTAGAAGATAACAATGTGGAGTTGTCGGGGTAT
ACCCCCCCCGGGAATATCGGACAAAGGGGGGCATGCGGGTGAACCGGTGG
GCGCCTCGGTGCTGCTTGGTCGGAAAATTTGCCAAAAAAAACGCCGAAGC
GGTTGTGCAGGCTCGTCATGGTCCCTGACCGTGCTGTCAATGCGCCAGAA
TGGAGTTCGGAGGGGTTGGGACACCGCACCCGTGTGAAAATGGCGGGGGT
ATACCCCCGTTTGTCTATTCTACGTGATTTTTTCCCTAACCTTAGACAAC
TATTTGCACAGCTTTTTCAACCAGTCGTCTGGCGGCAACTAGTTGCACAG
CTTTCTGGACGGTAGTTGTCTGGCAGGCAGCTACTGTCCCGATAGTTGTG
GTTGCACAGGGTGTAAATTGGTTCGCTTGGTTTGGTGTTCTGTCCAGCGA
TTGCCTCCGGAGTCACACTCTCGGTGCGTCGAGACACTTCGAACAGGCAA
ACGGCTCTCCCACGAAAAAGGCATTCTGGCAAGATTGATACCTTCCGCAA
CAATCGTGTTCTGCCACACCCAGCGTTGACGCATCAATCGGTCTTGATTT
TCACCTGTACCAGGCATGACGCGTATATTCTTAAACGCAAAATCCGCTTC
CCAGTAACAAGTTTTTGTTGGATTGCCGCTGCTGGTGGACGACCAGGTAT
AGTCCCCTTCGAACAAGAGTGGAACAGGCGGAGAGTGCAGGTTGCGCACT
TTTCTACAAAGGCTGCTGATCCCGTCGAAGAGCAGCGGCGGTACGCACTG
GAGGGGGCCACGGACGGACAGCAACAACCGTTTTTGCAACAGCCTGCGAA
TGACGTTTGGGAAAACGCGCCTCGCGTTGACTTGGTGCTGCGCACCTACT
CTAATGGCTTGAAGATATTTTGGAACGTATTCTTTCCGACCTATCTTGTG
AGTGCCTTGTTGAAACCCATGGCTGCAGTGCAGTTTCATAACCCTCCCGT
AGAAGTGTGTGGACAGGTGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig163:17639..19910+

>mRNA_P-littoralis_Contig163.3.1 ID=mRNA_P-littoralis_Contig163.3.1|Name=mRNA_P-littoralis_Contig163.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig163:17639..19910+ (Pylaiella littoralis U1_48)
GTCTACCAGGTGACCATCTCTAGGCCCGGAGGTATAGTCCCCTTCGAACA
AGAGTGGAACAGGCGGAGAGTGCAGGTTGCGCACTTTTCTACAAAGGCTG
CTGATCCCGTCGAAGAGCAGCGGCGGTACGCACTGGAGGGGGCCACGGAC
GGACAGCAACAACCGTTTTTGCAACAGCCTGCGAATGACGTTTGGGAAAA
CGCGCCTCGCGTTGACTTGGTGCTGCGCACCTACTCTAATGGCTTGAAGA
TATTTTGGAACGTATTCTTTCCGACCTATCTTGTGAGTGCCTTGTTGAAA
CCCATGGCTGCAGTGCAGTTTCATAACCCTCCCGTAGAAGTGTGTGGACA
GGTGTAG
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