mRNA_P-littoralis_Contig162.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig162.42.1
Unique NamemRNA_P-littoralis_Contig162.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig162.42.1 vs. uniprot
Match: D7FMF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF4_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 2.710e-40
Identity = 98/140 (70.00%), Postives = 111/140 (79.29%), Query Frame = 2 
Query:  221 MRLSTSILVIICCQAVALFNVGYAFVVSKSSIQRAAFLSEGRERALRADITDQLERIVDGPVVDLRGGKTT-RKKGKESSTSAAXXXXXXXXXXMKKGPKKPSFVTTIKAFFQSLINPNFVLKLKAKKEKHNTVHGSGSA 637
            MRLST+  VIICC A A  N  +AFVVSKSSI+RA  LSEGRE A+ A +  Q+E++VDGPVVDLRGGKTT  KKGKESS    XXXXXXXXXX  K    PSF+ TIKAFFQSL+NP+F LKL+AKKE+HNTVHGSGSA
Sbjct:    1 MRLSTAASVIICCHAAATLNSSHAFVVSKSSIRRAGALSEGRESAVAATM-GQMEQVVDGPVVDLRGGKTTGSKKGKESSAKXXXXXXXXXXXXXXK----PSFIATIKAFFQSLVNPHFALKLQAKKEQHNTVHGSGSA 135
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BLAST of mRNA_P-littoralis_Contig162.42.1 vs. uniprot
Match: A0A6H5KGU7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU7_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.230e-16
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 2 
Query:  221 MRLSTSILVIICCQAVALFNVGYAFVVSKSSIQRAAFLSEGRERALRADITDQLERIVDGPVVDLRGGKTTRKK 442
            MRLST    IICC A A  N  +A VVSKSSI+RA  LSEGRE A+ A + DQ+E++VDGPVVDLRGGKTT  K
Sbjct:    2 MRLSTVSSAIICCHAAATLNSSHALVVSKSSIRRAGALSEGRESAVAAAM-DQMEQVVDGPVVDLRGGKTTGSK 74
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig162.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMF4_ECTSI2.710e-4070.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGU7_9PHAE2.230e-1664.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig162contigP-littoralis_Contig162:220744..226292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1704
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_000940.1
Cds size420
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig162.42.1prot_P-littoralis_Contig162.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig162 221522..225228 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789782.4695878-UTR-P-littoralis_Contig162:220743..2208261680789782.4695878-UTR-P-littoralis_Contig162:220743..220826Pylaiella littoralis U1_48UTRP-littoralis_Contig162 220744..220826 +
1680789782.482959-UTR-P-littoralis_Contig162:221384..2215211680789782.482959-UTR-P-littoralis_Contig162:221384..221521Pylaiella littoralis U1_48UTRP-littoralis_Contig162 221385..221521 +
1680789782.5379007-UTR-P-littoralis_Contig162:225228..2262921680789782.5379007-UTR-P-littoralis_Contig162:225228..226292Pylaiella littoralis U1_48UTRP-littoralis_Contig162 225229..226292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789782.4914453-CDS-P-littoralis_Contig162:221521..2216101680789782.4914453-CDS-P-littoralis_Contig162:221521..221610Pylaiella littoralis U1_48CDSP-littoralis_Contig162 221522..221610 +
1680789782.5052874-CDS-P-littoralis_Contig162:222849..2229821680789782.5052874-CDS-P-littoralis_Contig162:222849..222982Pylaiella littoralis U1_48CDSP-littoralis_Contig162 222850..222982 +
1680789782.5143385-CDS-P-littoralis_Contig162:223389..2235201680789782.5143385-CDS-P-littoralis_Contig162:223389..223520Pylaiella littoralis U1_48CDSP-littoralis_Contig162 223390..223520 +
1680789782.5273175-CDS-P-littoralis_Contig162:225161..2252281680789782.5273175-CDS-P-littoralis_Contig162:225161..225228Pylaiella littoralis U1_48CDSP-littoralis_Contig162 225162..225228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig162.42.1

>prot_P-littoralis_Contig162.42.1 ID=prot_P-littoralis_Contig162.42.1|Name=mRNA_P-littoralis_Contig162.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MRLSTSILVIICCQAVALFNVGYAFVVSKSSIQRAAFLSEGRERALRADI
TDQLERIVDGPVVDLRGGKTTRKKGKESSTSAAKGKSSKTSKSMKKGPKK
PSFVTTIKAFFQSLINPNFVLKLKAKKEKHNTVHGSGSA*
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mRNA from alignment at P-littoralis_Contig162:220744..226292+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig162.42.1 ID=mRNA_P-littoralis_Contig162.42.1|Name=mRNA_P-littoralis_Contig162.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5549bp|location=Sequence derived from alignment at P-littoralis_Contig162:220744..226292+ (Pylaiella littoralis U1_48)
GGCAGCCAGGGATTTACCCACTTGACAGAGAGGGGCTAAATAATCTTAAA
CACAGAACCGAGCTTCCCTGCGGACTCTCTCAGGTGGAATGTCTTATTCA
ACAACGTCAGTGACTGCTCTGTGTGTCTGTATTTCACTGCTGTATAACTT
GTACAGGACGATAGCAGTACTGCTGTCAGTACTGCCGTACCGGTAAGATC
GGGAACCAAACATCACTGATGTTAGATATATAATGCCACGGAGAGGGGAG
GAGGCATGCGACTGCCTGTGTCGGAGAGAGCACATACATGTGATATGATA
CACACGACGTGTGTCCTTGTAGTATACTACAAGAGGGAGGGTAGTTAAAG
AAACAGACAAGGAACGAACACTATATGTAGGACAAGGGGGCATGGCGGCA
TGGGCAGCAAACGATTTTGCGGTAAACATTTCATAATTTCGCGCACCTGC
TAGGCCCCCCTACAAGCTTTGTTGAAGCCAGAGAGGATTACACACAGGGT
GGCAAAAATACTTCCGTGCAAGTGGGAGTAGTCCAATCTTGGTTTGTGCG
CTTGATCCCCTCACACATGCAGATATACCGGTAGTCTCATCTCCTTCCCT
GCTTCTGCATTTGTTTTTAATTTTTTCTCTCCGCGCGCAAGGGGTTTCCG
TAGGTTCTGCCTGCAGTACTTTGGTTCGATCTGCTGCCCCACCACCAGAA
CGGCGCCCCGATTTCGATTTTCTGTGACCACGCCGCAACCCAACATTACC
AACTCAACTGAACCTTGCACGCGTCGCCATGAGGTTGAGCACTTCCATTT
TGGTGATCATCTGCTGCCAGGCCGTTGCACTGTTCAACGTGGGCTATGCT
TTCGTGGTTTCCAAAAGGTAGGAGAGGAAGAAAGAGAGGGTAAGAGAGGG
TAGATAAATCTATTGAGCTCGATGATACCAACTTGCTCTCCGTTCACTGG
GCAGCTGGGTTCATGATCTGACCAGGGGAAGAGGAGAGCCGATCACCCTC
TAGTCCAAACGAAATACTCTGTAACCAGGAGATTGCTCATGGAGATAGGG
AAAACAAGGAATGCTCACGCACTCTGGGTACGTCGTGTAGACGGACCGGC
AAAGTTCTTGCTGTGAAAATACGAAAGATGCTGTCATCTGGTACTTCCAC
TTGTCAAAAACCGTGTGGTATCAGACATACTCCAGTATCATATTGTACGT
GTAATACGGCAACAGCCCCCGCGACTCAGATATACCCCAAGCTCAGCAGT
TGGTGCACGGCCCGGCTCCACGGGGGTACTGACGACGGCCGCTGAAGATT
TTCTGTTGAGGCCGTTGTGGTCCAGTGGTGCCATTAGGTGTTGACTATCA
TTCGGAGAGAAGCGGGGTATAATATGTCGCTACTCCAGTATATACGAATC
GCATATCACCCAAGATACCACGCCCCCCCTCTTGAACCGATTTTCAATTT
TCAATTTTCAAAGCTCGATTTCTCCTACAACGAAGGGGGGTGAAGTCCAA
TACGAAGCAAAAACGGTCTCTGAATCCTCTCGACGAAATGGCTCCAACGA
CGATCACCCGATCACCCTGTTCGGCTCAACAACTTCTCTCTGCTGTTGGA
GTCCTCAAGTTTTGAACGTCTGTTCAGGGGGTCCCGTGGTATCTTCATAG
CTCTATTTGTGCGTGTGCAGCACTTCTGTCGTACGAGTATAATGGTACTG
TATCATGGCATAGTTTAGGTTTGAAGGGCATTCTCTGAGGGCCGAGCGTG
GCTGCTATCTGGGATAACACGTACTTCGAAGTAGTACCCTGTATCATTTC
CAGACCTATTTTCTGCGTGAAACTGCGCTCGAGAGATTGTCAGACACCTG
CAAAATGACTCGTTTCTTATCTATGTAGTTCTATACGCGCCTGGTATACT
CGCAGTCACAGGTAACTATGCTGTGGCCTCCACTGCTGCCTGGTGGTCTG
ATGGCACGTCAAAATCAATTTCGCCTCGCCTTTTTGCGTGCAAGACCGCA
CTTTCTGGTTGACCTTAAAGTTCTGGCCAGCCTTGCAAACCTGGGAAACT
GAATACTTATTTCATTGTTTTTGTAATGCGGTTGGTACTGGTGCGTGGCA
CTGCAGTTCTATCCAGAGGGCGGCATTTTTATCTGAGGGCCGAGAGAGAG
CACTACGCGCCGACATAACGGACCAGCTGGAGCGGATCGTGGACGGGCCA
GTGGTTGACCTGAGGGGGGGCAAGACAACGCGGAAAAAAGTGAGTACCGT
AGGGCGAAAAGTTATGCTTATGCGGCAGACTTGACCACAATGGTAGTAGT
GCGCGTGCATGGAATGTGATTGTTCCGTTCTTGTCATGATGCCGATATCT
GCACTGTTAAAGCAGCAGTAGTGCTTTTAGATCATGCAAAAGGAAAAGGG
TTGATGCACCTCAGATGTGGAAACCCCCGAGATTTGTTTTCTATGCAGTA
TGATACGAAAGGGGTTTTACACACCCTTTGGTCTAGATATGTCATTGGCA
AGTATGCCTACAAAGGTGCTACCGAAGTGTGCTTCCCGAAGAGCATCATG
GCCGAAGACCTGACTTACCCTGTGTTACCAATCTGCCGCCGCGCGTTTAC
TTTTGTGTTTAAATCTCCGTCGTTTTTTATTGGTCATCTGCAAAAGGGCA
AGGAATCATCGACATCGGCGGCAAAAGGCAAGAGCTCCAAAACGTCCAAA
TCTATGAAGAAGGGACCCAAGAAACCGTCCTTCGTGACCACCATCAAGGC
CTTCTTCCAGTCGCTCATCAACCCAAAGTAAGAAATGTTTTTCGATGCGT
CTAGCATTGCAGGGCATCTGAATTTGTTTCCTATATTTTTTTTGTACTCG
CCCCGTGAAATAAAGCAGCCGCCGTCGGTTTGGGTTATCACTCTGTACGA
TACATACACGGCAGTGTGTGTTGTGCATCGTGACCCACGGCAGCATCACC
TTTACTCCCTCCCACGACGAAGGTGTTTCGTGATACATTTTGTGGTGGCG
GGAAATGCGATCATTTGTACGTGTGCGTGTGTGCATGTGTGCGTATGCGC
GCGGGCGTGTGTGTGTGTGTTGCATCGTGATCCACGCAGCATCATCAGAA
CTTCTTCGAGTGATTTGGTTTGTGAAAGTTTTTTCGGGGGCGGGATGTGC
GGGCATCTAGTTGCATAATTTTAAATCTAAGATACTTGTTGCTGCTGTGT
ATCATATCACACTCGTCGCACATCTCTCTCTCTGTTTCTAAAACATTATG
ATGGATATCATGCCGAAAGGCGCCAGACACCTCACAACGATTTGCACCGA
TCGCGCGTGCATATGGTCACTCCTGCTTTCCAATCCATGATAATACGTAG
AGTGATCTACCACGACCTGACCCCCATATTTCCTCAGCTCCGCTCCTGCC
ATAAAGGTGCGTTCGCCATATGTGCTGGTACCAATAGAAAAAAATGCCAC
GTTTTGTTTTTTTTGTCCACAAAATATACCATTGCGCAGAGCCTCCGACC
TCGATTTTCCTGTGAATTATCCAATCAATCTGCTGGTTCATCGGCTGCAA
GACTGATCCCGAAACCGGCAAACTTTTAATGGGTACGATAGTATATCGAC
CAAGCTACACACCCTGCGGGTTTCAGCCGACTTGGTCGATTCTACGAGTC
CGCAAAAGTGATCTGAAGTATTTTTTTGGAGCACCAAACCCGATATTTGC
CAATATGTGCAGAGGTACTAATGTACATACATCTGTTTCGCGCAAAAATG
CTCAACTTTGTGAACCAGTTTAGAGGAGGTTTGGGTCGATATAAGGCAAT
TTTTGCAGGCCCATCGTCAGCGCTGTAGTGCTGATCCCGAAACTGGCAGA
CATTATTTGGGTGGTGCATTCACCAAGCTACACTGCCTCCGAGTTTCAGT
CGATTTGGTTGATTCTACGAGTGCGCAAAACTGATCCCAAGTTTTTCTCC
CGAGAACTGAAAACGAGCTCTGGACGCCCAGAAATAATTGAGGAAAACGG
CTTGCTTTTAGTTGCGATAGCGCAGCATTCCTGCATTTTGAAGCAAAATG
ATGGCATATGAACTGTTGAAGCCTCCTAGAGATTTTCGCAGCAAGCCGCG
GTCTGTGCGAGGAGCACCAGCGGCGACAAGGGTCGTGACCCCAAGATGGC
AGTGTCGAGTACTGGCACCCAAAATTTTGGAGAGGCTCTGAGTTTCGAAG
CGTTAACACGTGGCACCCAGTACCAGCTGTTGTGGACAGAAAAAAAGGGC
CAAACCAGCAACCAGCACGTGCCAATTTTTACTTTTTTAGAGCAGACAAC
AACAGAGGCACCAGTATCTCTTTTTGACACATCTCTGCGCCCTCCCTTGC
CGGGTACCGACCCCCCTTCCCTCCCTTCCCTTCCGGCGCGCGGTGTCTCC
TCGAATGCAACCCCTCAGCTTTGTCTTGAAGCTGAAAGCCAAGAAGGAGA
AGCACAACACGGTGCACGGATCGGGCTCCGCATGATGCCGCTGGAGGCTG
GACAACAAAATTTCGTTACGGATGTGTGTTTTTGTTAAACCGGTCCCATA
ATTCACGCGGTTTTTGACGTTGGTCACACACTGCTGTGGTTCACCGCGGA
GTTCAGCCATCACTGCTGTTAATGCACGGCATTTGTCTGGTGGTACTCGG
CCACACACGGTAACTTGCGCAGCTTAACTACCAGTGGATTTTACGCGGTT
TGAAGTCTCGCGGTAATCTGCGGTTTTAGGGACATCTTGATGTTTTTTTA
GGTTGCTGTGGGATGTTCGAATGCTCGGGCTGTGCCCTGACGCAAGTGAG
GAATACTGATGAACGAAATGAGTCACACGGACAGTAGTCGACTAGTGGCC
ATGCGACACTGCTAAGATCAGGCACATGTAGTAGGGAAAAATATTTCGCG
GCGAGGTTTGCACATCATACGCCTGATGATGAAAAAAACTTGTGGTTCGA
AAAGTTGGCGCGTCTCTCCGGGCGTGTGCTTGTTGAATTGCATGACTGAA
GTGGCCAACGAGTCGGTGTGGTCAGTGTGTGTGTGGTGCGTGCTATGTAA
AATTATTTCATTTTTTCATAATTTCATAGTTTCATAATTTCCGATTTTCT
GAAGCATCGATTCCCGAACTTGAGTCATTTTTTTCTTTTTTGATAGAACC
ATTGTTGTGACGCGGGCCGGCCGGTTGACGGCCGTACCGTACCTGTCTTG
GGTGTCTCCAATCTTACCGTACTATAGTAGTGACGGTAACATTGAGTTCA
TGATGTTTTTTTCTTTCATTTGTTTGTTTACTTGTAAAACTCCTGTGTTG
ACCTTGCTCCTGTGTGACTCCGGCTAGCGCGCCCAACTTACACCGAAAGG
TGTATGGACTGACGCCCAGAAAGTGGGTATGGCAATGCACACACGCACAT
CCTTAGATGATGGGGTAGGTAAGCAATGCGACGAGACGGCGGGGAGCTTT
GCAGACTGACCTCGAAAACGCGGGTACATTGCGAACCACATTTTCAATTT
TCGATTTCTCCATAAACAACGTGAATCAGATGCCAGTGGTGCTACGAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig162:220744..226292+

>mRNA_P-littoralis_Contig162.42.1 ID=mRNA_P-littoralis_Contig162.42.1|Name=mRNA_P-littoralis_Contig162.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig162:220744..226292+ (Pylaiella littoralis U1_48)
ATGAGGTTGAGCACTTCCATTTTGGTGATCATCTGCTGCCAGGCCGTTGC
ACTGTTCAACGTGGGCTATGCTTTCGTGGTTTCCAAAAGTTCTATCCAGA
GGGCGGCATTTTTATCTGAGGGCCGAGAGAGAGCACTACGCGCCGACATA
ACGGACCAGCTGGAGCGGATCGTGGACGGGCCAGTGGTTGACCTGAGGGG
GGGCAAGACAACGCGGAAAAAAGGCAAGGAATCATCGACATCGGCGGCAA
AAGGCAAGAGCTCCAAAACGTCCAAATCTATGAAGAAGGGACCCAAGAAA
CCGTCCTTCGTGACCACCATCAAGGCCTTCTTCCAGTCGCTCATCAACCC
AAACTTTGTCTTGAAGCTGAAAGCCAAGAAGGAGAAGCACAACACGGTGC
ACGGATCGGGCTCCGCATGA
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