mRNA_P-littoralis_Contig1611.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1611.4.1
Unique NamemRNA_P-littoralis_Contig1611.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A6G6D7D1_ECTSI (Cytochrome c biogenesis protein CcsA n=7 Tax=Ectocarpales TaxID=2877 RepID=A0A6G6D7D1_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 4.160e-91
Identity = 144/169 (85.21%), Postives = 160/169 (94.67%), Query Frame = 1
Query:    1 MSIISEHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVILEYE 507
            MSI+SE+I+ ++NS+FISCF+CT  YWSIIS+RDT++ R IAKITSRFATLS+F LL DRW+EFGYFPLSNLYESLLFLSCLLLFVYQVLEYKI+SPVFGGIILPIVLFIT FAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLL++GSSLAILYLVV LE+E
Sbjct:    1 MSIVSENISLVSNSVFISCFVCTSAYWSIISMRDTKILRDIAKITSRFATLSLFVLLADRWIEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIQSPVFGGIILPIVLFITAFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLMVGSSLAILYLVVFLEFE 169          
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A6B7IK16_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7IK16_9PHAE)

HSP 1 Score: 273 bits (699), Expect = 3.890e-89
Identity = 143/169 (84.62%), Postives = 156/169 (92.31%), Query Frame = 1
Query:    1 MSIISEHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVILEYE 507
            MSIISEHIN  +NSIF+SCF  TL YW+I+S++D+ + R I KITSRFATLSIF LL DRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKI++PVFGGIILPIVLFIT FAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLI+GSSLAILYLV+ LE+E
Sbjct:    1 MSIISEHINLFSNSIFVSCFFSTLAYWTILSMKDSNILRTIGKITSRFATLSIFILLTDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIQTPVFGGIILPIVLFITAFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIVGSSLAILYLVLFLEFE 169          
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A1I9LVC5_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVC5_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 6.340e-88
Identity = 137/169 (81.07%), Postives = 156/169 (92.31%), Query Frame = 1
Query:    1 MSIISEHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVILEYE 507
            MS++SE++N +NNS+F+SCFLCTL YWSII ++DT++ R IAK+TSRFAT+SIF LL DRW+EFGYFPLSNLYESLLFL+CLLLFVYQVLEYKI+SP+FGGIILPIVLFIT F +F LPL MQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLV  LE+E
Sbjct:    1 MSLVSENLNLVNNSVFVSCFLCTLAYWSIIYMKDTQILRTIAKLTSRFATVSIFILLTDRWIEFGYFPLSNLYESLLFLACLLLFVYQVLEYKIQSPIFGGIILPIVLFITAFTIFNLPLAMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVGFLEFE 169          
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A516ICR2_9PHAE (Cytochrome c biogenesis protein CcsA n=27 Tax=Laminariales TaxID=2886 RepID=A0A516ICR2_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 3.530e-62
Identity = 108/161 (67.08%), Postives = 130/161 (80.75%), Query Frame = 1
Query:   25 NWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVILEYE 507
            N  NN +F  C + T+ YW  +  ++ ++F  +AKITSRFATLS+F  L++RW++FGYFPLSNLYESLLFLSC+LLFV Q LE K +S +FG II+PIVLFITGFA   LPLEMQKASALVPALQSNWLMMHVSLMMLSY++LIIGSS AI+Y+   LE E
Sbjct:   14 NIFNNILFACCLVSTIFYWFSLGFKNIKVFSTLAKITSRFATLSLFVFLLNRWIQFGYFPLSNLYESLLFLSCILLFVSQALESKTQSLLFGCIIVPIVLFITGFAALTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILIIGSSFAIVYVGSFLELE 174          
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A8F0F9V5_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9V5_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 3.530e-62
Identity = 104/158 (65.82%), Postives = 131/158 (82.91%), Query Frame = 1
Query:   34 NNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVILEYE 507
            NN +FISC + T+ YW  +  ++ ++F  +AK+TSRFA+L +F  L +RW+E GYFPLSNLYESLLFLSC+LLFVYQ+LEYK +S +FG II+PIVLFITGFA   LPLEMQKA+ALVPALQSNWLMMHVSLMMLSY++LI+GS+ +I+Y+   LE E
Sbjct:   17 NNILFISCLVSTVFYWFSLGFKNIKIFGSLAKVTSRFASLILFVFLSNRWLESGYFPLSNLYESLLFLSCILLFVYQILEYKTQSSLFGCIIVPIVLFITGFAALTLPLEMQKANALVPALQSNWLMMHVSLMMLSYAILIMGSAFSIVYVGAFLELE 174          
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A2R4QPY5_9PHAE (Cytochrome c biogenesis protein CcsA n=4 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPY5_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 2.150e-61
Identity = 104/158 (65.82%), Postives = 129/158 (81.65%), Query Frame = 1
Query:   16 EHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLV 489
             + N +NNS+FI  F+ T  YW  +S +   +F  I KITSRFATLSIF  L+ RW+++GYFPLSNLYESLLFLS +LLF+YQ LE K +SP+FGGI+LP+VL I+GF+   LPLEMQKASALVPALQSNWLMMHVSLMMLSY++L+IGS+ +I+YLV
Sbjct:    5 NYCNLLNNSLFILVFISTALYWFRLSFKSITIFNTIGKITSRFATLSIFLFLLIRWIDYGYFPLSNLYESLLFLSFILLFLYQFLESKAQSPIFGGIVLPLVLLISGFSELTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLV 162          
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A1L2F1W2_9PHAE (Cytochrome c biogenesis protein CcsA n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1W2_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 1.370e-59
Identity = 104/165 (63.03%), Postives = 129/165 (78.18%), Query Frame = 1
Query:   16 EHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVILEYEF 510
             + N +NN +F   F+ T  YW  +S +   +F  I +ITSRFAT++IF  L+ RWVE+GYFPLSNLYESLLFLS +LLF YQ LE K +SP+FGGIILPIVL I+GFA   LPLEMQKA ALVPALQSNWLMMHVSLMMLSY++L+IGS+ +I+YLV +L + +
Sbjct:    5 NYFNLLNNILFFLVFISTAIYWFRLSFKFVTIFNIIGEITSRFATINIFLFLLIRWVEYGYFPLSNLYESLLFLSFILLFSYQFLESKAKSPIFGGIILPIVLLISGFAELTLPLEMQKAGALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVTLLVFSY 169          
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A8F0FAP1_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAP1_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 5.990e-57
Identity = 96/162 (59.26%), Postives = 126/162 (77.78%), Query Frame = 1
Query:   16 EHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVILE 501
             + N+ +NSIFI   + T+ YW  +     + +   AK+ SR AT+ +F  L+ RW++ GYFPLSNLYESLLFLSC++LFVYQ +EYK +S +FG I+LP+VLFITGFA   LPLEM+KASALVPALQSNWLMMHVSLMMLSY++LI+GS ++IL+L++ L 
Sbjct:    5 NYCNFFSNSIFIFLLISTVFYWFSLRFTKVDFYYKFAKLNSRVATIILFVFLLSRWIQNGYFPLSNLYESLLFLSCIILFVYQFIEYKTKSKIFGAILLPLVLFITGFADLTLPLEMRKASALVPALQSNWLMMHVSLMMLSYAILIVGSLVSILFLIIFLS 166          
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A8F0F862_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F862_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.510e-52
Identity = 94/161 (58.39%), Postives = 120/161 (74.53%), Query Frame = 1
Query:   16 EHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVIL 498
             + N   NS+FI  F+ ++ YW  + I   ++   +AK T+R A LS+F  L  RW  +GYFPLSNLYESLLFL+CLL  V+Q+LEY+ +S  FG IILPI+LFIT FA   LPLEMQKASALVPALQSNWLMMHVSLMMLSY++L++GS  +I++L+  L
Sbjct:    5 NYFNIFKNSLFICLFISSIFYWVSLRITKFKMLYTVAKFTARIANLSLFIFLATRWGNYGYFPLSNLYESLLFLACLLSLVHQILEYQTQSKFFGTIILPIILFITSFADLTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLLGSLFSIIFLITFL 165          
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A2I4Q2E4_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2E4_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 2.340e-50
Identity = 88/167 (52.69%), Postives = 122/167 (73.05%), Query Frame = 1
Query:    7 IISEHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVILEYE 507
            I+ ++     N +F   F  T+ YW  +  +  +     A+I S FAT  +F  L++RWV +GYFP+SNLYESLLFLSCLLL ++Q+LEY+ +S +FG ++LP +LFIT FA   LPLEMQKA+ALVP+LQSNWLMMHVSLM+LSY++L++GS  +I++LV+ L  E
Sbjct:    2 IMDDYFTGFKNILFFCLFSSTIFYWFSLKFQILKKLHDFARINSIFATFLLFFFLLNRWVTYGYFPISNLYESLLFLSCLLLIIHQILEYQTQSRIFGALLLPSILFITSFADLTLPLEMQKATALVPSLQSNWLMMHVSLMLLSYAILLLGSLFSIIFLVLFLPSE 168          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G6D7D1_ECTSI4.160e-9185.21Cytochrome c biogenesis protein CcsA n=7 Tax=Ectoc... [more]
A0A6B7IK16_9PHAE3.890e-8984.62Cytochrome c biogenesis protein CcsA n=1 Tax=Clado... [more]
A0A1I9LVC5_9PHAE6.340e-8881.07Cytochrome c biogenesis protein CcsA n=1 Tax=Pleur... [more]
A0A516ICR2_9PHAE3.530e-6267.08Cytochrome c biogenesis protein CcsA n=27 Tax=Lami... [more]
A0A8F0F9V5_9PHAE3.530e-6265.82Cytochrome c biogenesis protein CcsA n=1 Tax=Chord... [more]
A0A2R4QPY5_9PHAE2.150e-6165.82Cytochrome c biogenesis protein CcsA n=4 Tax=Fucac... [more]
A0A1L2F1W2_9PHAE1.370e-5963.03Cytochrome c biogenesis protein CcsA n=13 Tax=Sarg... [more]
A0A8F0FAP1_9PHAE5.990e-5759.26Cytochrome c biogenesis protein CcsA n=1 Tax=Desma... [more]
A0A8F0F862_9PHAE1.510e-5258.39Cytochrome c biogenesis protein CcsA n=1 Tax=Proto... [more]
A0A2I4Q2E4_9PHAE2.340e-5052.69Cytochrome c biogenesis protein CcsA n=1 Tax=Dicty... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1611contigP-littoralis_Contig1611:4262..4871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D1J757
Preferred nameccsA
PFAMsCytochrom_C_asm
Model size610
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0008150,GO:0008152,GO:0009536,GO:0015886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051181,GO:0051234,GO:0055114,GO:0071702,GO:0071705,GO:1901678
Exons1
Evalue4.02e-92
EggNOG OGsCOG0755@1|root,2QU0T@2759|Eukaryota
Descriptioncytochrome complex assembly
Cds size516
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789779.76782-UTR-P-littoralis_Contig1611:4261..43551680789779.76782-UTR-P-littoralis_Contig1611:4261..4355Pylaiella littoralis U1_48UTRP-littoralis_Contig1611 4262..4355 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789779.7780824-CDS-P-littoralis_Contig1611:4355..48711680789779.7780824-CDS-P-littoralis_Contig1611:4355..4871Pylaiella littoralis U1_48CDSP-littoralis_Contig1611 4356..4871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1611.4.1prot_P-littoralis_Contig1611.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1611 4356..4871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1611.4.1

>prot_P-littoralis_Contig1611.4.1 ID=prot_P-littoralis_Contig1611.4.1|Name=mRNA_P-littoralis_Contig1611.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=172bp
MSIISEHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFAT
LSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFG
GIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSL
LIIGSSLAILYLVVILEYEFI*
back to top

mRNA from alignment at P-littoralis_Contig1611:4262..4871-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1611.4.1 ID=mRNA_P-littoralis_Contig1611.4.1|Name=mRNA_P-littoralis_Contig1611.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=610bp|location=Sequence derived from alignment at P-littoralis_Contig1611:4262..4871- (Pylaiella littoralis U1_48)
ATGTCAATTATAAGTGAACATATCAATTGGATTAACAATAGCATATTTAT ATCTTGTTTTCTTTGCACGTTAACATATTGGAGTATTATATCAATAAGAG ATACAGAACTTTTCAGAGGTATAGCAAAAATTACTTCGCGGTTTGCAACT TTAAGTATTTTTTCTCTTTTGATAGACCGTTGGGTTGAGTTTGGATATTT TCCTCTAAGTAATTTATATGAATCATTACTTTTTTTGTCTTGTTTGCTTT TATTTGTCTATCAAGTTTTAGAATACAAAATTGAAAGCCCTGTATTTGGT GGAATTATTTTACCAATAGTTTTATTTATTACAGGTTTTGCAGTTTTTAA GTTACCTCTTGAAATGCAAAAGGCAAGTGCCTTAGTTCCTGCCCTGCAGT CAAATTGGTTAATGATGCATGTTAGTTTAATGATGTTAAGTTATTCTTTA TTAATTATTGGATCATCTTTAGCAATTCTTTATTTAGTTGTTATTTTAGA ATACGAATTTATATAATATTGATAGTTGGAGTTTCCGTTCAATAAGTTTA GGTTTTCCTTTTTTAACAATTGGTATAATCGCAGGAGCTGTTTGGGCAAA TGAAGCTTGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1611:4262..4871-

>mRNA_P-littoralis_Contig1611.4.1 ID=mRNA_P-littoralis_Contig1611.4.1|Name=mRNA_P-littoralis_Contig1611.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=516bp|location=Sequence derived from alignment at P-littoralis_Contig1611:4262..4871- (Pylaiella littoralis U1_48)
ATGTCAATTATAAGTGAACATATCAATTGGATTAACAATAGCATATTTAT
ATCTTGTTTTCTTTGCACGTTAACATATTGGAGTATTATATCAATAAGAG
ATACAGAACTTTTCAGAGGTATAGCAAAAATTACTTCGCGGTTTGCAACT
TTAAGTATTTTTTCTCTTTTGATAGACCGTTGGGTTGAGTTTGGATATTT
TCCTCTAAGTAATTTATATGAATCATTACTTTTTTTGTCTTGTTTGCTTT
TATTTGTCTATCAAGTTTTAGAATACAAAATTGAAAGCCCTGTATTTGGT
GGAATTATTTTACCAATAGTTTTATTTATTACAGGTTTTGCAGTTTTTAA
GTTACCTCTTGAAATGCAAAAGGCAAGTGCCTTAGTTCCTGCCCTGCAGT
CAAATTGGTTAATGATGCATGTTAGTTTAATGATGTTAAGTTATTCTTTA
TTAATTATTGGATCATCTTTAGCAATTCTTTATTTAGTTGTTATTTTAGA
ATACGAATTTATATAA
back to top