mRNA_P-littoralis_Contig161.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig161.7.1
Unique NamemRNA_P-littoralis_Contig161.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig161.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig161contigP-littoralis_Contig161:21357..23457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size550
Hectar predicted targeting categorysignal peptide
Exons2
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789776.4147027-UTR-P-littoralis_Contig161:21356..214381680789776.4147027-UTR-P-littoralis_Contig161:21356..21438Pylaiella littoralis U1_48UTRP-littoralis_Contig161 21357..21438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789776.4329855-CDS-P-littoralis_Contig161:21438..215971680789776.4329855-CDS-P-littoralis_Contig161:21438..21597Pylaiella littoralis U1_48CDSP-littoralis_Contig161 21439..21597 +
1680789776.4413073-CDS-P-littoralis_Contig161:23148..234571680789776.4413073-CDS-P-littoralis_Contig161:23148..23457Pylaiella littoralis U1_48CDSP-littoralis_Contig161 23149..23457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig161.7.1prot_P-littoralis_Contig161.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig161 21439..23457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig161.7.1

>prot_P-littoralis_Contig161.7.1 ID=prot_P-littoralis_Contig161.7.1|Name=mRNA_P-littoralis_Contig161.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
MQSAPRRRLGPSTTVAAALVLAACLGQGAGSSSGYAGAGGGGGAPAPQRP
GQPSGGGYPHQQYQQQQQQYRPGAGPGQGQGPPSSQGPPPSGPGGAGAAA
GGGAGGPPSQQQQQALYGRGGPGAPGQQHQQQQGYRGGPPSHSQQYGQGQ
GRGSYG
back to top

mRNA from alignment at P-littoralis_Contig161:21357..23457+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig161.7.1 ID=mRNA_P-littoralis_Contig161.7.1|Name=mRNA_P-littoralis_Contig161.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2101bp|location=Sequence derived from alignment at P-littoralis_Contig161:21357..23457+ (Pylaiella littoralis U1_48)
TGTAGTGAGAGAGAGAGAGAGAGAGAGAGGGAAATAGACGAAGAGAGGAA
GAGCAGGGCATCTACGTGATCTACATACAATCATGCAGTCTGCGCCAAGA
AGGCGCCTCGGGCCTTCCACGACGGTCGCTGCAGCTCTCGTCCTCGCTGC
CTGCCTTGGACAGGGAGCTGGTTCATCGTCGGGCTACGCCGGAGCGGGTG
GTGGCGGTGGGGCTCCTGCGCCCCAACGACCAGGACAACCGGTACGTGTT
TTGCAGCAGCACCCCGAACCGGGAGCAGCATCGAACTTGGGATTCTCTTT
TTTTGGTCTGTTTGCCGACATTGTTTTGCACACACGTTTGGATCTCTCAA
TAATACTCGGAGGGGTATATACTGCAAACCGTCTGTGTTCCCAAAGGCGT
GAGTGCTGACCGTGCGTGCTCAACGGACTGCATTACCTCTCCTCTATTTT
ATAATTGTGCGAGGAAGGATTCTGTGTCGAAACCCTGGTTGCTTCATCTA
CATGTTCTGCAATACTATACGACTAATTGCATCCTTGGTATTACATTGGT
GTGTGTACAAGGTCCGAACATGTTTTCAGAGGTGGTGGGGAGGGTCATGC
GCGCCTCGAATCTTGATCTTTTAAAAAAAACAGAAAAACAAAAAGCTCCC
TCTCGCGTCTCGCACACATCACAGCAATTGTACTTTCGCCTGAAGCCTGA
ATGCACAGGAGTAGCGGTGCCTTGAAATCGGCGGCAGCACCTGTTTTTTT
TTTCATCTAAAGGGAAACGGCAACGGTCATAAATTCTTGATAAATTCACT
CGCTCACCCTTGTTAATTCTGTATCATCGTAGTAGTAGCGGTCCCATCGT
TCACATGTCCAAGGAAGAAAGACCTAAGATATTTCCACACCATACCGGTA
CGAGAATGTATCGCAACTCCAAAACGTTTTCACGTCAGCTTGTACTCGAG
AGGACATGGTCTTTTTTTGATCCACACGCGACATGTGGATCCTTTCATGT
ATGTCCTTGCTGCACAGCAAGTTGTGCTTGTGCACGACATGACTGCCGTG
CGCATGCATGCATTACCCACCGCACAAACCCGCTTGAAACCTTTGAAGAC
GCGGCTACCCTGTGATGGGCGTCGATGCGGACAGACTCGCGTTGGTGTCG
TGAGCGACGCCGCGTGACATGTAGCCGACTGGATCTCGCCGCGTGGTTGT
GAGGATGATCGTATTCTAGCATCGGCGCGTCGCTGTGCGTCTCCTAAACA
AGCGACGCAACGGCGGCGGAGCGCAGTACCGCTGCAGTGAACGGGGCTCT
CAATGGTGCAAGGGCGTGTTTCTTGGAGCTCAACAGCATAGTTCGGCCAT
CGTGTCTTCAATGCAGCGTAGTCCGCCAGTATCATATTCCCGTCTGAGAC
ATAGTATCTTTAGAATTTCCTTCGATGACTATCGATTAAACAGGACAAGA
GCGATCAATTGTATGTACCAGGTGTCACACTGCTCTCTCACATCTACGTG
TGTTTCCCACCTTTTTCTGGGCGCCGATCGATACGTTGCGGTATGTGCAG
ACCCATCGGCCGGGGTATCACAAGCGGATTTTGGACCACAGAATGTCTCT
ACTACCACCGTCGGGACCGCTCCACGCCTTGCATTTCGCTGAACACCGCA
ATGTGCATCGCACCTAGCGCCGCGACCCTCCCCTCCCCTCCCCAACTCGA
AACACAACCGCCGACTACTGTATTGTTTGTATGTACCAGCTGGTATGCGA
GCCGAACCACCCTCCTCCCTCCCCCCCCCGCTGTCTTCATAGAGTGGCGG
AGGGTACCCCCACCAACAATACCAGCAGCAGCAACAGCAGTACCGACCAG
GGGCAGGACCAGGCCAAGGTCAAGGTCCACCCTCATCTCAAGGCCCCCCT
CCTTCGGGGCCAGGCGGAGCAGGAGCAGCAGCTGGGGGGGGCGCCGGTGG
GCCTCCTTCCCAACAACAGCAGCAGGCGTTGTACGGGCGGGGGGGACCAG
GAGCGCCGGGTCAGCAGCACCAGCAGCAGCAAGGGTACCGGGGCGGTCCT
CCCTCACACAGTCAGCAGTATGGCCAGGGACAGGGAAGGGGGAGCTACGG
G
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig161:21357..23457+

>mRNA_P-littoralis_Contig161.7.1 ID=mRNA_P-littoralis_Contig161.7.1|Name=mRNA_P-littoralis_Contig161.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig161:21357..23457+ (Pylaiella littoralis U1_48)
ATGCAGTCTGCGCCAAGAAGGCGCCTCGGGCCTTCCACGACGGTCGCTGC
AGCTCTCGTCCTCGCTGCCTGCCTTGGACAGGGAGCTGGTTCATCGTCGG
GCTACGCCGGAGCGGGTGGTGGCGGTGGGGCTCCTGCGCCCCAACGACCA
GGACAACCGAGTGGCGGAGGGTACCCCCACCAACAATACCAGCAGCAGCA
ACAGCAGTACCGACCAGGGGCAGGACCAGGCCAAGGTCAAGGTCCACCCT
CATCTCAAGGCCCCCCTCCTTCGGGGCCAGGCGGAGCAGGAGCAGCAGCT
GGGGGGGGCGCCGGTGGGCCTCCTTCCCAACAACAGCAGCAGGCGTTGTA
CGGGCGGGGGGGACCAGGAGCGCCGGGTCAGCAGCACCAGCAGCAGCAAG
GGTACCGGGGCGGTCCTCCCTCACACAGTCAGCAGTATGGCCAGGGACAG
GGAAGGGGGAGCTACGGG
back to top