mRNA_P-littoralis_Contig1609.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1609.1.1
Unique NamemRNA_P-littoralis_Contig1609.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1609.1.1 vs. uniprot
Match: A0A7S3LZE3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZE3_9STRA)

HSP 1 Score: 154 bits (389), Expect = 9.610e-43
Identity = 78/134 (58.21%), Postives = 96/134 (71.64%), Query Frame = 1
Query:    4 QDKKKSKDAEKEAVRLQIQAENSGPSRRDIELQQINGKLAGDGLHVKTIISDGNCLYRAIADQLQVLSIGSKEDHNALRGIAAGYIRTHPEEFCPFLGYELGSTEFEEYCDKVASLTDAEWGGQPRTESTFSSI 405
            QDK      E  +V+ Q++ +NSGPS R+IEL +IN KLA D + VKTIISDGNCLYRAIADQLQ       ED+ +LRGIAA YIR H E+F PF+G E  S EF+ YCDKVASLTDAEWGGQ   ++  +++
Sbjct:  135 QDKXXXXXXELASVKQQLKDDNSGPSAREIELAKINAKLAQDSVAVKTIISDGNCLYRAIADQLQYTGSSHSEDYQSLRGIAAAYIRNHAEDFSPFIGVEAPSPEFDAYCDKVASLTDAEWGGQLEVKALSAAL 268          
BLAST of mRNA_P-littoralis_Contig1609.1.1 vs. uniprot
Match: A0A7S4B021_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B021_CHRCT)

HSP 1 Score: 93.6 bits (231), Expect = 2.740e-19
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   70 SGPSRRDIELQQINGKLAGDGLHVKTIISDGNCLYRAIADQLQVLSIGSKEDHNALRGIAAGYIRTHPEEFCPFLGYELGSTEFEEYCDKVASLTDAEWGGQ 375
            SGPS R +E +++  KL   GL V+ + +DG+CLYR++ADQLQ    G   D    R +AA YIRTHP++F P+L  E G+T  + YC +V S   +EWGGQ
Sbjct:  214 SGPSARAVETERLMAKLEPLGLAVQEVPADGHCLYRSVADQLQ--RSGDAADFQQCRRLAAEYIRTHPDDFMPYLPGEAGATTIDAYCAQVES--SSEWGGQ 311          
BLAST of mRNA_P-littoralis_Contig1609.1.1 vs. uniprot
Match: A0A7S1SQK9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SQK9_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 4.260e-18
Identity = 47/114 (41.23%), Postives = 74/114 (64.91%), Query Frame = 1
Query:    7 DKKKSKDAEKEAVRLQIQAENSGPSRRDIELQQINGKLAGDGLHVKTIISDGNCLYRAIADQLQVLSIGSKEDHNALRGIAAGYIRTHPEEFCPFLGYELG--STEFEEYCDKV 342
            DKKK++DAE+EA R+  + E  GP+ RD+E  +++  L    L +K I +DG+C+YRA+ DQL + S   K     LR +AA ++R+HP+++ PF+  E    + EFE+YC +V
Sbjct:   41 DKKKAQDAEREA-RIAAEKEAMGPTDRDVEAAKLDELLKPHQLRIKEIPADGHCMYRALEDQLVMTSEAPKGGFQGLRELAASFMRSHPDDYLPFVVEEREEPAEEFEKYCAEV 153          
BLAST of mRNA_P-littoralis_Contig1609.1.1 vs. uniprot
Match: F0W511_9STRA (Uncharacterized protein AlNc14C19G1982 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W511_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.510e-17
Identity = 53/132 (40.15%), Postives = 79/132 (59.85%), Query Frame = 1
Query:    1 IQDKKKSKDAEKEAVRLQIQAENSGPSRRDIELQQINGKLAGDGLHVKTIISDGNCLYRAIADQLQVLSIGSKE-DHNALRGIAAGYIRTHPEEFCPFLGYELG------STEFEEYCDKVASLTDAEWGGQ 375
            ++D+KK++  EKE      +A     S+RDIE++QI  KL    L ++ I SDGNCLY+A++DQL   +   K   +  LR +A+ YIRTH ++F PFL  ++       S +FEEYC  +  +  +EWGGQ
Sbjct:   96 MRDRKKNQ--EKERRERIDEANKHIVSKRDIEIEQIQRKLIPLNLEIREIPSDGNCLYQALSDQLHQENTALKAISYQELRQLASEYIRTHSDDFLPFLELDVSNSTKSESEQFEEYCKNI--VNSSEWGGQ 223          
BLAST of mRNA_P-littoralis_Contig1609.1.1 vs. uniprot
Match: A0A0D2X565_CAPO3 (OTU domain-containing protein 6B n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X565_CAPO3)

HSP 1 Score: 85.1 bits (209), Expect = 2.400e-16
Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   73 GPSRRDIELQQINGKLAGDGLHVKTIISDGNCLYRAIADQLQVLSIG-SKEDHNALRGIAAGYIRTHPEEFCPFLGYELGS----TEFEEYCDKVASLTDAEWGGQPRTESTFSSI 405
            GPS RD+E  Q+   L    L +KTI SDG+CLY A+ADQL+  ++  +  D  ALR + A +I  H ++F PFL  + G     TE ++YC+++AS   A WGGQ   ++  + +
Sbjct:  164 GPSARDVEANQLKQALQKADLAIKTITSDGHCLYNAVADQLRRNAVARAPTDFAALRKLTASFILAHQDDFLPFLVTDSGDMYTETELKKYCNEIAST--AAWGGQIEAQALSAGL 277          
BLAST of mRNA_P-littoralis_Contig1609.1.1 vs. uniprot
Match: A0A176VN84_MARPO (OTU domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VN84_MARPO)

HSP 1 Score: 84.7 bits (208), Expect = 3.440e-16
Identity = 56/127 (44.09%), Postives = 75/127 (59.06%), Query Frame = 1
Query:   28 AEKEAVRLQ-IQAE-NSGPSRRDIELQQINGKLAGDGLHVKTIISDGNCLYRAIADQLQVLSIGSKEDHNALRGIAAGYIRTHPEEFCPFLGYELGS---------TEFEEYCDKVASLTDAEWGGQ 375
            A++EA R Q IQ E N+  S R +E QQ+ GKLA  G  +K I SDG+CLYRA+ DQ+ +     +  +  LR +AA Y+RTH ++F PF+G E            T+FE YC +V S   A WGGQ
Sbjct:  138 AQQEAEREQRIQEEQNNVVSERVLEDQQLEGKLAPLGYTLKEIKSDGHCLYRAVEDQIGLHPELVQYSYQELRILAANYMRTHADDFMPFIGAETTEGDNPDETLQTKFERYCGEVEST--AAWGGQ 262          
BLAST of mRNA_P-littoralis_Contig1609.1.1 vs. uniprot
Match: A0A835WC86_CHLIN (OTU domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835WC86_CHLIN)

HSP 1 Score: 80.1 bits (196), Expect = 1.020e-14
Identity = 52/131 (39.69%), Postives = 76/131 (58.02%), Query Frame = 1
Query:   10 KKKSKDAEKEAVRLQIQAENS---GPSRRDIELQQINGKLAGDGLHVKTIISDGNCLYRAIADQLQVLSIGSKE--DHNALRGIAAGYIRTHPEEFCPFLGYELGSTE----FEEYCDKVASLTDAEWGGQ 375
            K++ K A++EA R    AE     GPS + +E +++   LA  GL ++ I +DG+C+YRA+ DQL     G+    DH ALR +AAGYIR+H ++F PF+  E    E     E YC+++     A WGGQ
Sbjct:   91 KRREKHAQQEAEREARIAEEQAALGPSDKALEEERLAALLAPLGLAIREIRADGHCMYRAVEDQLGQAGAGAAPPPDHLALRRLAAGYIRSHADDFLPFIFDEDEKGEPGEQLEAYCEELEGT--AAWGGQ 219          
BLAST of mRNA_P-littoralis_Contig1609.1.1 vs. uniprot
Match: I0YST0_COCSC (Cysteine proteinase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YST0_COCSC)

HSP 1 Score: 79.0 bits (193), Expect = 1.270e-14
Identity = 52/130 (40.00%), Postives = 75/130 (57.69%), Query Frame = 1
Query:    7 DKKKSKDAEKEAVRLQIQAENSGPSRRDIELQQINGKLAGDGLHVKTIISDGNCLYRAIADQLQVLS----IGSKEDHNALRGIAAGYIRTHPEEFCPFLGYELGS---TEFEEYCDKVASLTDAEWGGQ 375
            D K + +AE++A R+  + +  G S R IE +++   LA  GL V++I +DG+CLYRA+ +QL        +    D+ A+R  AA Y+RTHP++F PF+  E G      FE YC  VA    A WGGQ
Sbjct:   75 DAKAAAEAERDA-RIAEEQDAMGDSDRVIEERELAATLAPLGLAVRSIPADGHCLYRAVEEQLGAAGCEELLPPPRDYWAVRAKAAAYMRTHPDQFLPFIPQEDGEDVGAAFEAYC--VAVENSAAWGGQ 201          
BLAST of mRNA_P-littoralis_Contig1609.1.1 vs. uniprot
Match: A0A7S0NT02_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NT02_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 1.490e-14
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 1
Query:   70 SGPSRRDIELQQINGKLAGDGLHVKTIISDGNCLYRAIADQLQVLSIGSKEDHNALRGIAAGYIRTHPEEFCPFLGYE-----LGSTEFEEYCDKVASLTDAEWGGQ 375
            +GPS R++E++ +  KLA  GL V  I +DG+CLYR++ADQ+Q     +    +  R  AAGYIR+HP +F P+L  E       +   +EYCD +     AEWGGQ
Sbjct:  142 AGPSAREVEMEALMAKLAPLGLRVLEIPADGHCLYRSLADQMQRHGEQTATFQHCRRD-AAGYIRSHPADFLPYLVAEGAEGVADAQSVDEYCDVIEGK--AEWGGQ 245          
BLAST of mRNA_P-littoralis_Contig1609.1.1 vs. uniprot
Match: A0A507DY51_9FUNG (OTU domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DY51_9FUNG)

HSP 1 Score: 79.3 bits (194), Expect = 2.290e-14
Identity = 47/132 (35.61%), Postives = 73/132 (55.30%), Query Frame = 1
Query:   10 KKKSKDAEKEAVRLQIQAENSG-PSRRDIELQQINGKLAGDGLHVKTIISDGNCLYRAIADQLQVLSIGSKEDHNALRGIAAGYIRTHPEEFCPFL----GYELGSTEFEEYCDKVASLTDAEWGGQPRTES 390
            +K+ K AE EA+R     E +  P+++++E   I   L   GL +K I  DG+C+Y A+A QL V +    + +  +R +AA ++RTH ++F PFL    G  L   E++ YCD V    D  WGGQ   ++
Sbjct:  123 RKQRKVAEFEAMRRAAAEEAANMPNQKEVEDSAIAEMLVPLGLQIKQIAPDGHCMYNAVAHQLSVRAGDDSKTYKDIRSLAADFLRTHTDDFIPFLVNKNGDMLNPDEYQAYCDGVERTAD--WGGQTELQA 252          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1609.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3LZE3_9STRA9.610e-4358.21Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S4B021_CHRCT2.740e-1947.06Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S1SQK9_9CHLO4.260e-1841.23Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
F0W511_9STRA3.510e-1740.15Uncharacterized protein AlNc14C19G1982 n=1 Tax=Alb... [more]
A0A0D2X565_CAPO32.400e-1639.66OTU domain-containing protein 6B n=1 Tax=Capsaspor... [more]
A0A176VN84_MARPO3.440e-1644.09OTU domain-containing protein n=2 Tax=Marchantia p... [more]
A0A835WC86_CHLIN1.020e-1439.69OTU domain-containing protein n=1 Tax=Chlamydomona... [more]
I0YST0_COCSC1.270e-1440.00Cysteine proteinase n=1 Tax=Coccomyxa subellipsoid... [more]
A0A7S0NT02_9EUKA1.490e-1442.06Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A507DY51_9FUNG2.290e-1435.61OTU domain-containing protein n=1 Tax=Powellomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1609contigP-littoralis_Contig1609:3526..4158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog88036.EFJ16303
PFAMsOTU
Model size556
Max annot lvl35493|Streptophyta
KEGG koko:K18342
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.86e-19
EggNOG OGsCOG5539@1|root,KOG2606@2759|Eukaryota,37MPU@33090|Viridiplantae,3GDHZ@35493|Streptophyta
EC3.4.19.12
DescriptionOTU domain-containing protein
Cds size459
COG categoryOT
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789776.278872-CDS-P-littoralis_Contig1609:3525..37011680789776.278872-CDS-P-littoralis_Contig1609:3525..3701Pylaiella littoralis U1_48CDSP-littoralis_Contig1609 3526..3701 +
1680789776.2938123-CDS-P-littoralis_Contig1609:3778..40611680789776.2938123-CDS-P-littoralis_Contig1609:3778..4061Pylaiella littoralis U1_48CDSP-littoralis_Contig1609 3779..4061 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789776.303637-UTR-P-littoralis_Contig1609:4061..41581680789776.303637-UTR-P-littoralis_Contig1609:4061..4158Pylaiella littoralis U1_48UTRP-littoralis_Contig1609 4062..4158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1609.1.1prot_P-littoralis_Contig1609.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1609 3526..4061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1609.1.1

>prot_P-littoralis_Contig1609.1.1 ID=prot_P-littoralis_Contig1609.1.1|Name=mRNA_P-littoralis_Contig1609.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=153bp
IQDKKKSKDAEKEAVRLQIQAENSGPSRRDIELQQINGKLAGDGLHVKTI
ISDGNCLYRAIADQLQVLSIGSKEDHNALRGIAAGYIRTHPEEFCPFLGY
ELGSTEFEEYCDKVASLTDAEWGGQPRTESTFSSIAPSNLNLLSRCTRIM
YE*
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mRNA from alignment at P-littoralis_Contig1609:3526..4158+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1609.1.1 ID=mRNA_P-littoralis_Contig1609.1.1|Name=mRNA_P-littoralis_Contig1609.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=633bp|location=Sequence derived from alignment at P-littoralis_Contig1609:3526..4158+ (Pylaiella littoralis U1_48)
ATACAGGATAAGAAGAAATCTAAAGATGCAGAAAAAGAAGCTGTTAGATT ACAAATTCAAGCAGAAAACTCTGGTCCTAGTCGACGAGATATCGAACTTC AACAGATAAACGGCAAGCTGGCAGGGGATGGCTTGCATGTCAAAACAATC ATATCGGATGGTAACTGTCTCTATCGGTTAGTTTATATAACACTATAATT GTTTTAGTGTTTTCATCACAATCTTATCTGCTATATTACTATACTTATTA TAGTGCTATAGCAGATCAATTGCAAGTGTTAAGCATAGGGTCAAAGGAAG ACCACAACGCTCTGCGCGGGATTGCTGCTGGATATATTCGAACACACCCG GAAGAGTTTTGTCCATTTCTCGGTTATGAGCTGGGTAGTACGGAATTTGA AGAATATTGTGATAAAGTTGCATCACTTACAGATGCCGAGTGGGGTGGGC AACCTCGAACTGAAAGCACTTTCAGCAGCATTGCACCGTCCAATCTTAAT CTACTCAGCAGATGCACCCGTATTATGTATGAATGATGCTAATGTGTCAG TTGAGACAAATACTTCTTTAAAAGTAACTTTTCATAAGCATTATTATGCT TTGGGTGAGCATTATAACTCTGTAGAACCTGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1609:3526..4158+

>mRNA_P-littoralis_Contig1609.1.1 ID=mRNA_P-littoralis_Contig1609.1.1|Name=mRNA_P-littoralis_Contig1609.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig1609:3526..4158+ (Pylaiella littoralis U1_48)
ATACAGGATAAGAAGAAATCTAAAGATGCAGAAAAAGAAGCTGTTAGATT
ACAAATTCAAGCAGAAAACTCTGGTCCTAGTCGACGAGATATCGAACTTC
AACAGATAAACGGCAAGCTGGCAGGGGATGGCTTGCATGTCAAAACAATC
ATATCGGATGGTAACTGTCTCTATCGTGCTATAGCAGATCAATTGCAAGT
GTTAAGCATAGGGTCAAAGGAAGACCACAACGCTCTGCGCGGGATTGCTG
CTGGATATATTCGAACACACCCGGAAGAGTTTTGTCCATTTCTCGGTTAT
GAGCTGGGTAGTACGGAATTTGAAGAATATTGTGATAAAGTTGCATCACT
TACAGATGCCGAGTGGGGTGGGCAACCTCGAACTGAAAGCACTTTCAGCA
GCATTGCACCGTCCAATCTTAATCTACTCAGCAGATGCACCCGTATTATG
TATGAATGA
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