mRNA_P-littoralis_Contig1608.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1608.1.1
Unique NamemRNA_P-littoralis_Contig1608.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1608.1.1 vs. uniprot
Match: A0A6H5JQW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW6_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 4.720e-7
Identity = 28/92 (30.43%), Postives = 50/92 (54.35%), Query Frame = 3 
Query:  267 SGSSRIEIRQKTDVRPWTGNFSKGESVEIALRVFKGSVFAWLNSEGLDGFMDSQMEIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKI 542
            S ++ + + +   + PW G + +GE  +    +F  ++ A    EG+   + S   IPVG+E I+M+ LR  +  D+V K++  WNMLI  +
Sbjct:   99 SSAATLRMTEVKRLAPWDGMYRQGEDEQERFSIFPSNMIAMFAQEGVREVVLSDHIIPVGLEGIDMEDLRRMHSPDSVEKAITAWNMLITSV 190
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1608.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JQW6_9PHAE4.720e-730.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1608contigP-littoralis_Contig1608:1476..2146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size672
Hectar predicted targeting categoryother localisation
Exons1
Cds size615
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789776.2216804-UTR-P-littoralis_Contig1608:1475..15311680789776.2216804-UTR-P-littoralis_Contig1608:1475..1531Pylaiella littoralis U1_48UTRP-littoralis_Contig1608 1476..1531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789776.2359562-CDS-P-littoralis_Contig1608:1531..21461680789776.2359562-CDS-P-littoralis_Contig1608:1531..2146Pylaiella littoralis U1_48CDSP-littoralis_Contig1608 1532..2146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1608.1.1prot_P-littoralis_Contig1608.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1608 1532..2146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1608.1.1

>prot_P-littoralis_Contig1608.1.1 ID=prot_P-littoralis_Contig1608.1.1|Name=mRNA_P-littoralis_Contig1608.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=205bp
MSLPGQGEGENRQGTPPQPAADGSSGHHETPVGALSLSPGDLAGIASIVD
QVMRNAPAQAAAQDRGQPHQSGSSRIEIRQKTDVRPWTGNFSKGESVEIA
LRVFKGSVFAWLNSEGLDGFMDSQMEIPVGVENINMQQLRLDYGSDNVTK
SLKVWNMLIQKICCQPIQQQVLACRTPQQAWRVFLSHYAVKRSDERNQLE
EEWTY
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mRNA from alignment at P-littoralis_Contig1608:1476..2146+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1608.1.1 ID=mRNA_P-littoralis_Contig1608.1.1|Name=mRNA_P-littoralis_Contig1608.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=671bp|location=Sequence derived from alignment at P-littoralis_Contig1608:1476..2146+ (Pylaiella littoralis U1_48)
TAACACGCTAGCGAGTTCGAACGACGGTGGACTTCTGTGTGAGCGGCCGC
TAGGCCATGTCTCTGCCGGGACAAGGAGAAGGAGAGAACAGACAAGGAAC
ACCACCACAACCAGCAGCTGACGGCAGCAGCGGGCATCATGAGACCCCGG
TCGGCGCGCTCTCGTTATCGCCAGGCGACCTGGCCGGGATTGCCTCGATT
GTCGACCAAGTTATGCGGAACGCACCCGCCCAGGCAGCTGCCCAGGACCG
AGGGCAGCCCCACCAGTCAGGTTCTTCTAGGATTGAGATTAGGCAGAAAA
CTGATGTTCGGCCTTGGACGGGGAATTTTTCGAAGGGAGAGAGTGTTGAG
ATTGCCCTGCGTGTGTTCAAGGGTTCGGTTTTCGCTTGGCTGAATTCTGA
AGGGCTTGATGGATTTATGGATAGCCAGATGGAGATTCCTGTAGGAGTGG
AGAACATCAACATGCAACAACTCAGACTTGACTATGGTAGTGATAACGTC
ACAAAATCCCTCAAAGTGTGGAACATGCTCATCCAGAAAATCTGCTGCCA
GCCTATCCAGCAACAGGTGCTCGCGTGTAGAACCCCTCAGCAGGCATGGC
GTGTGTTTTTGTCTCATTACGCAGTGAAGAGGTCGGACGAGAGAAACCAG
CTAGAAGAGGAATGGACTTAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1608:1476..2146+

>mRNA_P-littoralis_Contig1608.1.1 ID=mRNA_P-littoralis_Contig1608.1.1|Name=mRNA_P-littoralis_Contig1608.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=615bp|location=Sequence derived from alignment at P-littoralis_Contig1608:1476..2146+ (Pylaiella littoralis U1_48)
ATGTCTCTGCCGGGACAAGGAGAAGGAGAGAACAGACAAGGAACACCACC
ACAACCAGCAGCTGACGGCAGCAGCGGGCATCATGAGACCCCGGTCGGCG
CGCTCTCGTTATCGCCAGGCGACCTGGCCGGGATTGCCTCGATTGTCGAC
CAAGTTATGCGGAACGCACCCGCCCAGGCAGCTGCCCAGGACCGAGGGCA
GCCCCACCAGTCAGGTTCTTCTAGGATTGAGATTAGGCAGAAAACTGATG
TTCGGCCTTGGACGGGGAATTTTTCGAAGGGAGAGAGTGTTGAGATTGCC
CTGCGTGTGTTCAAGGGTTCGGTTTTCGCTTGGCTGAATTCTGAAGGGCT
TGATGGATTTATGGATAGCCAGATGGAGATTCCTGTAGGAGTGGAGAACA
TCAACATGCAACAACTCAGACTTGACTATGGTAGTGATAACGTCACAAAA
TCCCTCAAAGTGTGGAACATGCTCATCCAGAAAATCTGCTGCCAGCCTAT
CCAGCAACAGGTGCTCGCGTGTAGAACCCCTCAGCAGGCATGGCGTGTGT
TTTTGTCTCATTACGCAGTGAAGAGGTCGGACGAGAGAAACCAGCTAGAA
GAGGAATGGACTTAT
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