mRNA_P-littoralis_Contig16.6.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig16.6.1 vs. uniprot
Match: A0A6H5K8N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N6_9PHAE) HSP 1 Score: 163 bits (412), Expect = 1.220e-44 Identity = 109/239 (45.61%), Postives = 132/239 (55.23%), Query Frame = 1
Query: 4 GTEGYTPLHIACSRGHTSIISALLAGGADKDAKDNRGAIXXXXXXXXXXXXXXXXXXXXXA---NITIGGSFTPFS----------------------------GSTALHAAAIGNLSSCSSPSSFGGAASAISAIDALMDAGADVDAQRLDGGAPLHYAAAF---NSLCSRFDVILALLRRGASVDLVHSKTAQTPLHVACQHKKRGVDAVVDLLLRWGADEAAVGGDGRTALELLEI 618
G EGY PLH+A SRGH I++ LL+ GA +DA DNRGA A SF P G+TALHAAA +C AS SA+ AL+DAGA+++ QR DGG+PLHYAAA +S S F+ ILALL+RGASV+ VHS TAQTPL +ACQH+ RG+ +VVDLLLRWG D+ VGGDGRTA ELLE+
Sbjct: 64 GEEGYAPLHVASSRGHVGILTTLLSFGAHRDAVDNRGARPLHHAIAEDRVAATEALLVAGALGATPEDSSSFRPLVLAACKGSIDIINVLLKHGVDVNSRDDVVGATALHAAA-----NC---------ASGASAVHALVDAGAEINVQRKDGGSPLHYAAASRASSSPSSPFETILALLQRGASVNQVHSGTAQTPLLLACQHRPRGLGSVVDLLLRWGGDDTVVGGDGRTASELLEL 288
BLAST of mRNA_P-littoralis_Contig16.6.1 vs. uniprot
Match: D7FYF2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF2_ECTSI) HSP 1 Score: 137 bits (344), Expect = 1.000e-34 Identity = 100/239 (41.84%), Postives = 117/239 (48.95%), Query Frame = 1
Query: 4 GTEGYTPLHIACSRGHTSIISALLAGGADKDAKDNRGAIXXXXXXXXXXXXXXXXXXXXXA---NITIGGSFTPFS----------------------------GSTALHAAAIGNLSSCSSPSSFGGAASAISAIDALMDAGADVDAQRLDGGAPLHYAAAFNSL---CSRFDVILALLRRGASVDLVHSKTAQTPLHVACQHKKRGVDAVVDLLLRWGADEAAVGGDGRTALELLEI 618
G EGY PLH+ A +DA DNRGA A SF P G+TALHAAA N SS S A+ AL+DAGA+++ QR DGG+PLHYAAA + S F+ ILALL RGASV+ VHS TAQTPL +ACQH+ RG+ +VVDLLLRWG DE VGGDGRTA ELLE+
Sbjct: 64 GEEGYAPLHVXXXXXXXXXXXXXXXXXAHRDALDNRGARPLHHAIAEDRVAATETLLAAGALSATADDSSSFRPLVLAACKGSIDIINILLKHGVDVNSRDDVVGATALHAAA--NWSSGSG------------AVHALIDAGAEINVQRKDGGSPLHYAAASRASPPSSSPFETILALLERGASVNQVHSGTAQTPLLLACQHRPRGLGSVVDLLLRWGGDEKVVGGDGRTASELLEL 288
BLAST of mRNA_P-littoralis_Contig16.6.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 1.040e-13 Identity = 68/209 (32.54%), Postives = 96/209 (45.93%), Query Frame = 1
Query: 7 TEGYTPLHIACSRGHTSIISALLAGGADKDAKDNRGAIXXXXXXXXXXXXXXXXXXXXXANITIGGSF--TPFSGSTALHAAAIGNLSSCSSPSSFGGAASAISAIDALMDAGADVDAQR---LDGGAPLHYAAAFNSLCSRFDVILALLRRGASVDLVHSKTAQTPLHVACQHKKRGVDAVVDLLLRWGADEAAVGGDGRTALELLEI 618
+ G +PL +A GH S + ALL GAD + + GA A + GG+ T G TALH A A+D L+DAGADV+A+ L G PL NS + ++ALL+RG +V+ + + LH+ C RG+D +VDLLLRWGA E AV +G T ++L++
Sbjct: 204 SRGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGA--HLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHAR------------------GAQAVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSC----EAVVALLKRGGNVNDTNCG-GLSALHLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDILKV 387
BLAST of mRNA_P-littoralis_Contig16.6.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 3.820e-12 Identity = 68/205 (33.17%), Postives = 96/205 (46.83%), Query Frame = 1
Query: 10 EGYTPLHIACSRGHTSIISALLAGGADKDAKDNRGAIXXXXXXXXXXXXXXXXXXXXXANITIGGSFTPFS-GSTALHAAAIGNLSSCSSPSSFGGAASAISAIDALMDAGADVDAQRLDGGAPLHYAAAFNSLCSRF--DVILALLRRGASVDLVHSKTAQTPLHVAC-QHKKRGVDAVVDLLLRWGADEAAVGGDGRTALELL 612
+G TPLH+A GH S + ALLA AD D + I A + G + G T+LH AA+ N ++AID L++AGA V+ + D P F CS + LAL + GA+++ +TPL +A Q ++GV A+VD+LLR GADE A+ DGRTA E++
Sbjct: 119 QGRTPLHLAVENGHLSTVKALLA--ADPDTSVHY-RIWNRSYSVLDFAAQKGDACVLRAILQHGVDVNRRTDGYTSLHVAALNNR---------------VAAIDVLVEAGAHVEVEDDDDCTP------FLDACSNHCHEAALALFKHGANIE-ARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVV 298
BLAST of mRNA_P-littoralis_Contig16.6.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 5.750e-11 Identity = 63/207 (30.43%), Postives = 92/207 (44.44%), Query Frame = 1
Query: 10 EGYTPLHIACSRGHTSIISALLAGGADKDAKD---NRGAIXXXXXXXXXXXXXXXXXXXXXANITIGGSFTPFSGSTALHAAAIGNLSSCSSPSSFGGAASAISAIDALMDAGADVDAQRLDGGAPLHYAAAFNSLCSRF--DVILALLRRGASVDLVHSKTAQTPLHVAC-QHKKRGVDAVVDLLLRWGADEAAVGGDGRTALELL 612
+G TPLH+A GH S + ALLA D + NR ++ G T+LH AA+ N ++AID L++AGA V+ + D P F C + LAL + G++++ +TPL +A Q ++GV A+VD+LLR GADE A+ DGRTA E++
Sbjct: 70 QGRTPLHLAVENGHLSTVKALLAADPDTSVRYRIWNRSYSVLDLAAQKGDACVLRAILQHGVDVN-----RRTDGYTSLHVAALNNR---------------VAAIDVLVEAGAHVEVEDDDDCTP------FLDACINHCHEAALALYKHGSNIE-ARDIRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVV 249
BLAST of mRNA_P-littoralis_Contig16.6.1 vs. uniprot
Match: D8LP53_ECTSI (EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP53_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 1.170e-7 Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 1
Query: 325 LMDAGADVDAQRLDGGAPLHYAAAFNSLCSRFDVILALLRRGASVDLVHSKTAQTPLHVACQHKKRGVDAVVDLLLRWGADEAAVGGDGRTALELL 612
L++AGA A+ G + L YAAA +S D+ L LLR GA V+ + LH AC ++ +A+VDLLLRWGADE V GRT + L
Sbjct: 289 LLEAGAAASAEDQTGTSSLSYAAASSS---SVDMALLLLRYGADVNTRCYLFGSSVLHNACTNRDN-TEALVDLLLRWGADETVVDSSGRTPMNHL 380
BLAST of mRNA_P-littoralis_Contig16.6.1 vs. uniprot
Match: A0A6H5JWW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 3.310e-7 Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 436 LLRRGASVDLVHSKTAQTPLHVACQHKKRGVDAVVDLLLRWGADEAAVGGDGRTALELLE 615
LL GAS+ TPLH+AC + G++A VDLLLRWGADE A+ DG+T +LL+
Sbjct: 539 LLGHGASLT-AQDVDGNTPLHLACYRQDSGLEAPVDLLLRWGADETALNNDGKTPADLLD 597
BLAST of mRNA_P-littoralis_Contig16.6.1 vs. uniprot
Match: A0A2S9JA25_9HYPH (Ankyrin repeat domain-containing protein n=4 Tax=Phyllobacterium TaxID=28100 RepID=A0A2S9JA25_9HYPH) HSP 1 Score: 57.4 bits (137), Expect = 8.020e-7 Identity = 38/95 (40.00%), Postives = 54/95 (56.84%), Query Frame = 1
Query: 325 LMDAGADVDAQRLDGGAPLHYAAAFNSLCSRFDVILALLRRGASVDLVHSKTAQTPLHVACQHKKRGVDAVVDLLLRWGADEAAVGGDGRTALEL 609
++ GADV+ + +G APLH AA + VI L+ +GA V++V TPLH+A + AVV LL+ GAD++A G+TALEL
Sbjct: 79 MLACGADVNQKTQEGWAPLHTAAYYGPA----SVIDLLVSKGAKVNIVGDYDKMTPLHMAASYSDD--PAVVQALLKHGADKSARTAGGKTALEL 167
BLAST of mRNA_P-littoralis_Contig16.6.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 1.800e-6 Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query: 436 LLRRGASVDLVHSKTAQTPLHVACQHKKRGVDAVVDLLLRWGADEAAVGGDGRTALELLE 615
LL GAS+ ++ TPLHVAC + +G++A VDLLLRWGADE A+ G+T LL+
Sbjct: 325 LLWHGASLTAQDTE-GNTPLHVACYRQHKGLEAPVDLLLRWGADETALNNAGKTPAGLLD 383
BLAST of mRNA_P-littoralis_Contig16.6.1 vs. uniprot
Match: A0A6H5JRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY1_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 3.150e-6 Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1
Query: 487 TPLHVACQHKKRGVDAVVDLLLRWGADEAAVGGDGRTALELLE 615
TPLH AC + RGV+A VDLLLRWGADE A+ D +T +LL+
Sbjct: 259 TPLHWACYWQVRGVEATVDLLLRWGADETALDNDSKTPADLLD 301 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig16.6.1 >prot_P-littoralis_Contig16.6.1 ID=prot_P-littoralis_Contig16.6.1|Name=mRNA_P-littoralis_Contig16.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=206bp SGTEGYTPLHIACSRGHTSIISALLAGGADKDAKDNRGAIPLHHTISQDHback to top mRNA from alignment at P-littoralis_Contig16:28455..29153+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig16.6.1 ID=mRNA_P-littoralis_Contig16.6.1|Name=mRNA_P-littoralis_Contig16.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=699bp|location=Sequence derived from alignment at P-littoralis_Contig16:28455..29153+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig16:28455..29153+ >mRNA_P-littoralis_Contig16.6.1 ID=mRNA_P-littoralis_Contig16.6.1|Name=mRNA_P-littoralis_Contig16.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=618bp|location=Sequence derived from alignment at P-littoralis_Contig16:28455..29153+ (Pylaiella littoralis U1_48)back to top |