mRNA_P-littoralis_Contig16.210.14 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig16.210.14 vs. uniprot
Match: D8LJC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC7_ECTSI) HSP 1 Score: 856 bits (2211), Expect = 3.660e-291 Identity = 599/1191 (50.29%), Postives = 705/1191 (59.19%), Query Frame = 2
Query: 8 MMAMGGAGGGIAASAPSSFRLKER--ASGSFLQGELERHPKRLPLASVVLPACYKGEKEELRLARTEGHLESLNIIDACAGEALEEAGKECIQEVSDFVAGWKFR-GCGGSAEEFGASDLVPLAIVDAGLQLGDRKSAVDHIKKGLEGEGGVGRRGGSFRCGPRVVAVLRAQDCSSVQASLEQISRQ-CHEKGGKRSHRPLFMDALEEWYNSYYPASYSTXXXXXXXXXXXXENEADVSRAGAAAAARR---------SRGPVVVLLEDVEDFDKQVLRDLMNVLAQPPSEGKNFSHRRKRGSS----SAPTPRHGSPVPMALVAIASARVGFPMGRLSPSAVRQLSPEYFVFPSSLECVEILYDKLFIQGRLPFWLGSRLLSWMKSTFNDKHLSVGTLSRQVKLEAFLHFNRPASYLCLHFCRPWLRRSAVGNCPTQTMKHMKYKLVRDSK-MPPDQLGAALQGVSPRLEHEQAVDLIEQGLRREASRALKLWFFHKVWEVLLGS-RNRETLLRDLRIENDVLGRP---AAAGNCSAGAGSHAGPRDSTRAAELGSPMRIVGLLSTTSKRTKRYYSEFKLVSEALAYLVPSDVSHLLGELLGALPPTASQSRAPTDPRTNPSTALSGPTNQEQPGAAVSANESTSLLSEPTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPASSLGLTERECTSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRATPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPQSIQGLHGAEASYLRRGAGRVLKLWAQADEDGWLEPDDGAIQHWSRPSSRLDGGGGDVTKSGGILRAGVGSG--KSAGSRGNRLFNSALHQTSATVSPHGNAEHGAPRSPHSGPDHRQASSGTRGGSVTDVDGKALRRACLVRELQVLFLHVMGEARDLPLGPGIGKPPPLTKHASVLAEVFCCDERDRETLETSLCPLARASVDLGMMEGACKGWSAVVQKRKEISKEQPVLDICALYSSYRGHGKTIDRSDWFADFRDETVKHRT----ATTPTELSAGLRTKSAKWEKKKKDKTCRPSKSSGRVSTXXXXXXXXXXXXXXXXXXXXXXXGVDPTGSVELLARFEHASDQLASMGYVRPLKRRKNLEREGRG---RGAGPKGEVTRLVFSYTMEDGAL 3487
M M G GG AP FR++ R ++ E +RHPK L S LP CY GE EE+RLARTEG E L+I+ C EA++EAG +CI+ VSDF+AGW+FR G GG A+ G SDLVPLA+VDAGLQLGDR+SAV H+K+GLE G G GG R P+VVAVLRAQDC +V+A+ +QI RQ CH +GG RS RPLFMDALEEWY S +S ST E+ V GA A RR GPVVVLLEDVE FDKQVLRDL+NVLAQPP + + RK G + +P+ALVAIASARVGFPM RLSPSAVRQLSPE F FPSS+EC+++LY+KLF+Q RLP W+G RLLSWMK+TF+D HLS+G SRQV + AFLHFNRPASYLCL CRPWL RS++ NCP + M HMKYKL RDSK MP + L A+L GV RL+ +QA LIE+GLRREAS AL++WFFHKVW VLL S RET + LR+ + VLGRP A AGAG G RA +LGS +RI+GLLS SK+++RYY+E K VSEALAYL+P +V LL ELL ALP ++ RA GA + S ++ SP S TS XXXXXXXXXXX XXXXXXXXXX + P AP +QGL EA YLRRGA RVL W +A+++GW EPDD I+ W R +S L+ SGG KSAGSRGNRLF+S Q P G+ GAP + D R+A L RACLVRELQ+LFLHVMGEAR LGPG+ PPPL +H SVLAE +CCDE++++ +E+SLCPLARA+VDLGMMEGACKG S V+ +R+ +S+E PVLD+CALYS YRGHGKTIDRSDWF DFR E +KH+T A T S G +TK XXXXXXXXXXXXXXXXX +DPTG ELLARFEHASDQLASMGYVRPLKRRK + GPKG VTRLVFSYTMEDGAL
Sbjct: 4 MGTMAGMGGXXXGQAPQQFRIRTRPPTGPDMMEVEDDRHPKMSSLHSASLPPCYPGELEEVRLARTEGLRECLSIVKECGEEAVKEAGTDCIRSVSDFIAGWRFRDGDGGGAKHVGESDLVPLAVVDAGLQLGDRRSAVQHMKEGLER--GNGELGGRRR--PQVVAVLRAQDCRTVEAAFKQILRQKCHARGGARSRRPLFMDALEEWYGSCAISS-STSTWEPSGEEEGGEDGTAVD--GARAPGRRVAAXXXXXXXXGPVVVLLEDVEGFDKQVLRDLLNVLAQPPCKSRRVQ--RKTGGTVNRLXXXXXXXXRTLPLALVAIASARVGFPMDRLSPSAVRQLSPENFYFPSSVECIDLLYEKLFVQRRLPVWMGGRLLSWMKTTFDDTHLSLGMFSRQVIMAAFLHFNRPASYLCLQHCRPWLWRSSLSNCPVEAMTHMKYKLARDSKSMPANTLQASLPGVPARLDPQQAAGLIEKGLRREASMALRVWFFHKVWSVLLKSLEGRETPVELLRMADAVLGRPGRQAGGTREGAGAGLDVGTMRQ-RAVKLGSSVRILGLLSA-SKKSRRYYAELKEVSEALAYLLPGEVKGLLRELLRALP--SANQRAAXXXXXXXXXXXXXXXXXXXSGAISATTGSDDASTD-------------------------------------DRSPELS------GSTSPXXXXXXXXXXXXEISLKTTSPGPSSEXXXXXXXXXXGKKSSQERPPTISQERPAENSRDFSSSPT-------------------APLVVQGLDRTEADYLRRGAERVLGQWGRAEQEGWAEPDDNTIE-WGRSTSYLN----TCATSGGTXXXXXXXXXXKSAGSRGNRLFSSRSRQ------PAGSENGGAPSNAEDNQDQREA----------------LNRACLVRELQLLFLHVMGEARAASLGPGMVPPPPLAEHTSVLAEAYCCDEKEKDAIESSLCPLARANVDLGMMEGACKGSSRVILQRRSMSEEIPVLDLCALYSCYRGHGKTIDRSDWFLDFRKEALKHKTRIPAAAKATAPSTGGKTKXXXXX--------------XXXXXXXXXXXXXXXXXXXXXXVPDEEGAIDPTGGAELLARFEHASDQLASMGYVRPLKRRKRAXXXXXXXXXQAPGPKGSVTRLVFSYTMEDGAL 1078
BLAST of mRNA_P-littoralis_Contig16.210.14 vs. uniprot
Match: A0A6H5JMQ2_9PHAE (ORC3_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ2_9PHAE) HSP 1 Score: 596 bits (1537), Expect = 6.490e-195 Identity = 361/621 (58.13%), Postives = 423/621 (68.12%), Query Frame = 2
Query: 8 MMAMGGAGGGIAASAPSSFRLKER--ASGSFLQGELERHPKRLPLASVVLPACYKGEKEELRLARTEGHLESLNIIDACAGEALEEAGKECIQEVSDFVAGWKFR-GCGGSAEEFGASDLVPLAIVDAGLQLGDRKSAVDHIKKGLEGEGGVGRRGGSFRCGPRVVAVLRAQDCSSVQASLEQISRQCHEKGGKRSHRPLFMDALEEWYNSY-YPASYSTXXXXXXXXXXXXENEADVSRAGAAAAARRSRG-------PVVVLLEDVEDFDKQVLRDLMNVLAQPPSEGKNFSHRRKRGSSSAPTPRHGSP-------VPMALVAIASARVGFPMGRLSPSAVRQLSPEYFVFPSSLECVEILYDKLFIQGRLPFWLGSRLLSWMKSTFNDKHLSVGTLSRQVKLEAFLHFNRPASYLCLHFCRPWLRRSAVGNCPTQTMKHMKYKLVRDSK-MPPDQLGAALQGVSPRLEHEQAVDLIEQGLRREASRALKLWFFHKVWEVLLGS-RNRETLLRDLRIENDVLGRPAAAGNC--SAGAGSHAGPRDSTRAAELGSPMRIVGLLSTTSKRTKRYYSEFKLVSEALAYLVPSDVSHLLGELLGALPPT--ASQSRAPTDPR 1798
M MGG GGG AP FR++ R ++ E +R PK L S +LP CY GE EE+RLARTEG E LNI+ C EA++EAG +CI+ VS ++AGW+FR G GG A+ G SDLVPLA+VDAGLQLGDR+SAV HIK+GLE G G GG R P+VVAVLRAQDCS+V+A+ +QI RQCH +GG RS RPLFMDALEEWY+S P+S ST XXXX PVVVLLEDVE FDKQVLRDL+NVLAQPP + RR +G + R +PMALVAIASARVGFPM RLSPSAVRQLSPE F FPSS+ECV++LY+KLF+Q RLP W+G RLLSWMK+TF+D HLS+G SRQV + AFLHFNRPASYLCL CRPWL RS+V NCP + M HMKYKL RDSK MPP L A+L GV RL+ +QA LIE+GLRREASRAL+LWFFHKVW VLL S RE + LR+ + VLGRP G AGAG G R RA +LGS +RI+GLLS SK+++RYY+E K VSEALAYL+P +V LL ELL ALP +S S A TDPR
Sbjct: 7 MTGMGGGGGG---QAPQQFRIRTRPPTGPGMMEFEDDRQPKMSSLHSAILPPCYPGELEEVRLARTEGLRECLNIVKECVEEAVKEAGTDCIRSVSGYIAGWRFRDGEGGGAKHVGESDLVPLAVVDAGLQLGDRRSAVQHIKEGLER--GDGELGGRRR--PQVVAVLRAQDCSTVEAAFKQILRQCHARGGTRSRRPLFMDALEEWYSSCAIPSSTSTSTSKCSGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVVVLLEDVEGFDKQVLRDLLNVLAQPPCKS-----RRVQGRTGGTVNRXXXXXXXXXXTLPMALVAIASARVGFPMDRLSPSAVRQLSPENFHFPSSVECVDLLYEKLFVQRRLPVWMGGRLLSWMKATFDDTHLSLGMFSRQVIVAAFLHFNRPASYLCLQHCRPWLWRSSVSNCPVEAMTHMKYKLARDSKSMPPKTLQASLPGVPARLDPQQAAGLIEKGLRREASRALRLWFFHKVWNVLLKSLEGRENPVELLRMTDAVLGRPGRQGGPREGAGAGLDVG-RMRQRAVKLGSSVRILGLLSA-SKKSRRYYAELKEVSEALAYLLPGEVKGLLHELLCALPSADQSSASSAATDPR 613
BLAST of mRNA_P-littoralis_Contig16.210.14 vs. uniprot
Match: A0A6H5JQX5_9PHAE (ORC_WH_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQX5_9PHAE) HSP 1 Score: 162 bits (410), Expect = 4.050e-42 Identity = 100/183 (54.64%), Postives = 109/183 (59.56%), Query Frame = 2
Query: 2984 ISKEQPVLDICALYSSYRGHGKTIDRSDWFADFRDETVKHRTATTPTELSAGLRTKSAKWEKKKKDKTCRPSKSSGR------VSTXXXXXXXXXXXXXXXXXXXXXXXGV-------DPTGSVELLARFEHASDQLASMGYVRPLKRRKNLEREGRGRGA--GPKGEVTRLVFSYTMEDGAL 3487
+S+E PVLD+CALYS YRGHGKTIDRSDWF DFR E +KH+T P A T +K K KK + RP + G VS GV DPTG ELLARFEHASDQLASMGYVRPLKRRK E EG G+G GPKG VTRLVFSYTMEDGAL
Sbjct: 1 MSEEIPVLDLCALYSCYRGHGKTIDRSDWFLDFRKEALKHKTRIPP----AAKATAPSKGGKNKKQ-SFRPREIPGELGAYSGVSHVFVQAAPGGAGGAGVQTSSAAGGGVPDEEGAIDPTGGAELLARFEHASDQLASMGYVRPLKRRKRPEAEGAGKGQAPGPKGSVTRLVFSYTMEDGAL 178
BLAST of mRNA_P-littoralis_Contig16.210.14 vs. uniprot
Match: A0A6H5JMB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB7_9PHAE) HSP 1 Score: 139 bits (350), Expect = 2.800e-34 Identity = 70/125 (56.00%), Postives = 88/125 (70.40%), Query Frame = 2
Query: 2708 KALRRACLVRELQVLFLHVMGEARDLPLGPGIGKPPPLTKHASVLAEVFCCDERDRETLETSLCPLARASVDLGMMEGACKGWSAVVQKRKEISKEQPVLDICALYSSYRGHGKTIDRSDWFADF 3082
+AL RACLVRELQ+LFLHVMGEAR + LGPG+ PPPL +HA VLAE +CC+++D+E LE+SLCPLARA+VDLGMMEGACKG S V+ +R S QP + T+ DW ++
Sbjct: 41 EALNRACLVRELQLLFLHVMGEARAVSLGPGMVTPPPLAEHAPVLAEAYCCNDKDKEALESSLCPLARANVDLGMMEGACKGSSRVILQR---SVAQPAFALSV----------TVTHDDWELEY 152 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.210.14 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig16.210.14 >prot_P-littoralis_Contig16.210.14 ID=prot_P-littoralis_Contig16.210.14|Name=mRNA_P-littoralis_Contig16.210.14|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1161bp MMAMGGAGGGIAASAPSSFRLKERASGSFLQGELERHPKRLPLASVVLPAback to top mRNA from alignment at P-littoralis_Contig16:819359..888751- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig16.210.14 ID=mRNA_P-littoralis_Contig16.210.14|Name=mRNA_P-littoralis_Contig16.210.14|organism=Pylaiella littoralis U1_48|type=mRNA|length=69393bp|location=Sequence derived from alignment at P-littoralis_Contig16:819359..888751- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig16:819359..888751- >mRNA_P-littoralis_Contig16.210.14 ID=mRNA_P-littoralis_Contig16.210.14|Name=mRNA_P-littoralis_Contig16.210.14|organism=Pylaiella littoralis U1_48|type=CDS|length=3483bp|location=Sequence derived from alignment at P-littoralis_Contig16:819359..888751- (Pylaiella littoralis U1_48)back to top |