mRNA_P-littoralis_Contig159.60.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig159.60.1
Unique NamemRNA_P-littoralis_Contig159.60.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig159.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig159contigP-littoralis_Contig159:248977..251278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size474
Hectar predicted targeting categoryother localisation
Exons2
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789757.8948421-CDS-P-littoralis_Contig159:248976..2490561680789757.8948421-CDS-P-littoralis_Contig159:248976..249056Pylaiella littoralis U1_48CDSP-littoralis_Contig159 248977..249056 +
1680789757.9048762-CDS-P-littoralis_Contig159:250885..2512161680789757.9048762-CDS-P-littoralis_Contig159:250885..251216Pylaiella littoralis U1_48CDSP-littoralis_Contig159 250886..251216 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789757.9179988-UTR-P-littoralis_Contig159:251216..2512781680789757.9179988-UTR-P-littoralis_Contig159:251216..251278Pylaiella littoralis U1_48UTRP-littoralis_Contig159 251217..251278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig159.60.1prot_P-littoralis_Contig159.60.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig159 248977..251216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig159.60.1

>prot_P-littoralis_Contig159.60.1 ID=prot_P-littoralis_Contig159.60.1|Name=mRNA_P-littoralis_Contig159.60.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp
GVDSSIGVRPVCRATIRRPARPLQQNGRYHPRNPAAVCTRAFFGVTPHRH
LWRWVGQRWSSGQRRSKQQKRDARQQRPRETSTLHVPGLHVTHDSRHRSL
FLQKYGREHRPPPGSVQQRQRSVHEAAAETLQRRRR*
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mRNA from alignment at P-littoralis_Contig159:248977..251278+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig159.60.1 ID=mRNA_P-littoralis_Contig159.60.1|Name=mRNA_P-littoralis_Contig159.60.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2302bp|location=Sequence derived from alignment at P-littoralis_Contig159:248977..251278+ (Pylaiella littoralis U1_48)
GGTGTAGATAGCTCCATCGGAGTGCGCCCTGTATGTCGGGCAACAATCCG
TCGCCCCGCCCGACCACTCCAGCAAAACGGGTAAGCGACTCTTTGTCTCC
GTCCTCAGAAGCAAGTGCATCTGGGGTTCCGTTCGTGTTGTGTCCCCCGT
CAAGCGGACCACTAGTCGTTTCGTTGGCGCAGCAACCTAGCAGCACCGTA
ACAACTTCAACAGGGGTGCTGTTTTCACTCTCTACTTCGTTTACTGGCGA
TTCACCAATCGTTTCGTTGGTACAGTACAGCAATCTACATAGCAACACCA
ACACCACCATTTCTTTGACGACAGACGCGCACACGCACGCTGCGAGGTGC
CAATGCTGTAGCACCCGTGTCTGCACAACTGCCGTTCCCGTCCACAGCAG
CAATAGCAGCAGTCGGATCAGGGGTCATCCCAGCACCCGTTCCAGGTGTA
TCATACTCCCTCCGCGACCGTACGCCCCCCAGGCAGCCACCGTTTCCACA
AACTCAGCCGATCTCCTCAGCTTCCGGTCAAGCGATATTCGTATTTGTAT
ACGCGAAAACCCATTTTCTAAGTTGGCACCTCGAACCGGAAAAACAGTAG
AACGCAATTCAATACACAATATGTACTGTAGGGTTATCAGACCCGCACAA
GAAGTTTGGAGCGTTGGAGCCGGAATAAACGCAACGTGTGAGAGGGGGAG
GTTGGGATGTTATCGTGACACGCATATTTTGGTTTCGAACTCTGCCATAT
TATCTCACTCAAATGCCAAGATGTTAAGGCCGACCCTAAATCCAAGACAA
ATACTGTAGGGAGCACTAGAGAGCGCTCAAATAAGAAGTGTGGTAGAGTG
GTGCCTAATCGAAAGCATGAAATACGGGGACGACATCATGTGCTAGTCAC
GTGCGTGTTGGCACGCTCAGATCTACGACTGGGGCCGAGATTTCCGTGGT
GGAAAAGATACCAAGTACTCGGAGTATGTGGTACAGCAGTCCAGAAACCG
TCCGCATCTCAGCCCGAAATATATCATACCATCCTCCAATGCTGTACTTG
TACTCATCGTCATGGACCCCAATGTCTGGACTGCGGGTCTGCTGCGTAGC
TCACACCACTAGCTACCTCCCATGAGGTGAAGATGATAGGTAAATTCGTT
TCGACCTCTGATATCTCGACCCCAGCAGTAGATATCAGCGTGCCAACACG
CAGGTCACTACAACGTAGTGCCCTCTATTTGGTTCAGCTGTGCATGTAGG
CACCACTACACGGGGAGGTCGACTTTCGAAAAACATCTTGAAGAATGACT
AGAAAAACGTCCTTAGGACTGGAACGGACCCTTAAACGGAGACATTGCGC
AGGATGTACCTGAGACGTGGATCCACTATCGCGTGGTTGTCGGGCTCAAA
GCAGCAGCAGTCTCGACAGACGAAGCTTTTGCAAACAACGTTGCGTAGAA
ACGCGTTGCATTCGGTAGGATCGGGAGAGGTGTTGACACTCGTCCACTAG
ATTTTGTCAGGACAGATCGGCTGCGAAAACGCAGTCGAAACACCCGACCC
AGCCATCCCTGGTTCGCACCCTCCCCCTCGCACCTGGCAAGCCATGGTAA
AAAAAAAGAAGCTCTCCTTGATTTTTTTCTGCCGACTAATTCACTTGAAG
AGGGAGAACACGCTATTGCCCTCTGTTTTCGTACCGTATTGTCACGTTTT
ATAGCTGCCGTCGAACGTTCGACCGGCAATCGTACCTCATGGAACTGTAT
GACGGTTGCCCTCTGGCAATTGGACTAAATCCTGCCATTCGTGTGGTACA
GATGACCGATACACCTGCTGTATATTTGTAGGTATGAGACAATCGGTTCA
GACGGAAACCAAGTCGTCAGCGCACTTATGTTCAATCCTCCCCTTCCCAA
ATCCACCAGCCGATACCACCCCCGTAACCCAGCAGCCGTTTGCACAAGGG
CTTTCTTCGGGGTCACCCCGCACCGTCACCTATGGCGGTGGGTGGGCCAA
CGGTGGAGCTCGGGCCAGCGAAGGAGCAAGCAGCAGAAGCGGGACGCGCG
CCAGCAACGGCCGCGAGAAACAAGCACTTTGCACGTACCCGGGCTGCATG
TCACACACGACTCACGACACCGCTCGTTGTTTCTGCAAAAATACGGAAGA
GAACATCGCCCGCCGCCTGGCAGCGTTCAACAGCGGCAGCGGAGCGTCCA
CGAAGCAGCAGCAGAAACGCTACAACGGAGGAGGCGATGACTCCGATTCC
GAATAGGGGTGCCCAGGTGCATTACCTGTTGCACTTGGGAAGAAAACTGC
CA
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Coding sequence (CDS) from alignment at P-littoralis_Contig159:248977..251278+

>mRNA_P-littoralis_Contig159.60.1 ID=mRNA_P-littoralis_Contig159.60.1|Name=mRNA_P-littoralis_Contig159.60.1|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig159:248977..251278+ (Pylaiella littoralis U1_48)
GGTGTAGATAGCTCCATCGGAGTGCGCCCTGTATGTCGGGCAACAATCCG
TCGCCCCGCCCGACCACTCCAGCAAAACGGCCGATACCACCCCCGTAACC
CAGCAGCCGTTTGCACAAGGGCTTTCTTCGGGGTCACCCCGCACCGTCAC
CTATGGCGGTGGGTGGGCCAACGGTGGAGCTCGGGCCAGCGAAGGAGCAA
GCAGCAGAAGCGGGACGCGCGCCAGCAACGGCCGCGAGAAACAAGCACTT
TGCACGTACCCGGGCTGCATGTCACACACGACTCACGACACCGCTCGTTG
TTTCTGCAAAAATACGGAAGAGAACATCGCCCGCCGCCTGGCAGCGTTCA
ACAGCGGCAGCGGAGCGTCCACGAAGCAGCAGCAGAAACGCTACAACGGA
GGAGGCGATGA
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