mRNA_P-littoralis_Contig159.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig159.10.1
Unique NamemRNA_P-littoralis_Contig159.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig159.10.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.460e-15
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   22 AGIRMQDVLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVFA 207
            AG+  + VLDRQ     D GYCLA RVRNQVY++ + DL C+G GNQC A  CM AAL VFA
Sbjct:  101 AGVLSRKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFA 162
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BLAST of mRNA_P-littoralis_Contig159.10.1 vs. uniprot
Match: A0A6H5KG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG83_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.870e-15
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 LHQAN--IIAGIRMQDVLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVFA 207
            LHQ+   ++A +R+QDV  R     +D GYC+A RVRNQ Y++ AKDLGC+G GNQ KA +CM AA  VFA
Sbjct:   95 LHQSASAVLAAVRLQDVFTRYK---DDPGYCVAKRVRNQGYYDTAKDLGCFGRGNQLKAGECMCAATKVFA 162
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BLAST of mRNA_P-littoralis_Contig159.10.1 vs. uniprot
Match: A0A6H5KKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ8_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.250e-14
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   31 RMQDVLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVFA 207
            R QDV  R     +D GYC+A RVRNQVY++ AKDLGC+G GNQ KA +CM AA  VFA
Sbjct:   16 RQQDVCTRYK---DDPGYCVAKRVRNQVYYDTAKDLGCFGRGNQLKAGECMRAATKVFA 71
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BLAST of mRNA_P-littoralis_Contig159.10.1 vs. uniprot
Match: D7G5X1_ECTSI (Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5X1_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 6.010e-13
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:   34 MQDVLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVFA 207
            +Q VLDR+  R  D GYCLA RVR+QVY+ A+ DL C G GNQC A  CM AA  V+A
Sbjct:   63 VQKVLDREVSRDGDAGYCLAKRVRHQVYYGASADLLCKGMGNQCTAGACMRAAAQVYA 120
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BLAST of mRNA_P-littoralis_Contig159.10.1 vs. uniprot
Match: A0A6H5KBF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF5_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.490e-12
Identity = 33/54 (61.11%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   43 VLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVF 204
            VLDRQ  R  D GYCLA RVR QVY+EA+ DL C G  NQC A  CM AA  V+
Sbjct:    3 VLDRQVSRDGDAGYCLANRVRYQVYYEASADLLCKGMDNQCTAGACMRAAAQVY 56
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BLAST of mRNA_P-littoralis_Contig159.10.1 vs. uniprot
Match: A0A6H5JMB2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB2_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.760e-11
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   52 RQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVF 204
            RQ +   D GYCLA RVRNQVY++   DL   GAGNQC AA+CM AAL VF
Sbjct:    9 RQLKLDGDPGYCLAKRVRNQVYYDTPTDLLAKGAGNQCTAAECMVAALKVF 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig159.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KHG3_9PHAE4.460e-1559.68Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG83_9PHAE5.870e-1554.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKJ8_9PHAE2.250e-1461.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5X1_ECTSI6.010e-1358.62Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBF5_9PHAE1.490e-1261.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMB2_9PHAE3.760e-1162.75Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig159contigP-littoralis_Contig159:50763..51734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size209
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789758.8105948-CDS-P-littoralis_Contig159:50763..509311680789758.8105948-CDS-P-littoralis_Contig159:50763..50931Pylaiella littoralis U1_48CDSP-littoralis_Contig159 50764..50931 -
1680789758.8215694-CDS-P-littoralis_Contig159:51695..517341680789758.8215694-CDS-P-littoralis_Contig159:51695..51734Pylaiella littoralis U1_48CDSP-littoralis_Contig159 51696..51734 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig159.10.1prot_P-littoralis_Contig159.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig159 50764..51734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig159.10.1

>prot_P-littoralis_Contig159.10.1 ID=prot_P-littoralis_Contig159.10.1|Name=mRNA_P-littoralis_Contig159.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
LHQANIIAGIRMQDVLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYG
AGNQCKAAKCMSAALGVFA
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mRNA from alignment at P-littoralis_Contig159:50763..51734-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig159.10.1 ID=mRNA_P-littoralis_Contig159.10.1|Name=mRNA_P-littoralis_Contig159.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=972bp|location=Sequence derived from alignment at P-littoralis_Contig159:50763..51734- (Pylaiella littoralis U1_48)
CTTCACCAGGCTAACATCATAGCCGGGATACGCATGCAGGTTGGTCAGGC
AAAAAATAAAAGCATACCGCCGGAACAACAGCAGCAGCAGCAGACTTATC
CAGTTGAAAACATACCGTCCAATGTATAGTAGTGGCACATGAACATGAGC
ATCACATGTGGTATACACTGAGACATCATAGTCTTGTACTTCGAGTCTGT
ATGTGTAGTTAGGAGTATGTATGTATGCGTATATATGTATGATATGGATG
TATATATACTTGGTATATGTATTGTTTGTGTGCAATATACCGGTACTGCT
GTATTTGTAATTAGCAATATGTTTATGTTTACATATACTTCGTATGTACG
GCTGTACTGCTGTATACTCCGTGCGAGTATTTATATTACACGTTTTCTAT
GTAAATATAATATCATACACGCAGTATACTTCGTGTACGATGTACTGCTG
TATGCCTAGTCCGGGCTTGAAAATGCGGTGGCGGCAGTGGGGGACTGTTT
GCACTGTCCTAAAGTAAAAAGAGCTTTTGTTATATATACATAGGATGTAT
CCAATTTTGTAGATACCAATATTGAGAGTGTATGCCGCCTGTACAGAGAT
ACCCTCCCCCCCCCTGCCGTGTCGTTGGTAAAGCAGTGCACAGCAGTCGC
CCTCCTGGGTTACTTCTAGCCTCGCAGCCAACTGAAAATGGTCGTTTGTC
CAATGGTGTTTGCGTCCTACAAAAGTGCATCAGGAATAACTTTGTCCTGG
CAGGCGAGCAAATTCCCAATTCCCCTGCCCTCCACGCGCGGTTCCTTGAA
CAGGATGTTCTCGACCGGCAGACGCAAAGGGGTGAAGATGTTGGGTACTG
CCTCGCGACGCGTGTGCGCAACCAGGTGTATCATGAGGCCGCAAAGGACC
TCGGGTGCTATGGAGCCGGCAACCAGTGCAAGGCTGCGAAGTGCATGAGT
GCAGCTCTTGGCGTTTTCGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig159:50763..51734-

>mRNA_P-littoralis_Contig159.10.1 ID=mRNA_P-littoralis_Contig159.10.1|Name=mRNA_P-littoralis_Contig159.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig159:50763..51734- (Pylaiella littoralis U1_48)
CTTCACCAGGCTAACATCATAGCCGGGATACGCATGCAGGATGTTCTCGA
CCGGCAGACGCAAAGGGGTGAAGATGTTGGGTACTGCCTCGCGACGCGTG
TGCGCAACCAGGTGTATCATGAGGCCGCAAAGGACCTCGGGTGCTATGGA
GCCGGCAACCAGTGCAAGGCTGCGAAGTGCATGAGTGCAGCTCTTGGCGT
TTTCGCC
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