mRNA_P-littoralis_Contig1581.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1581.2.1
Unique NamemRNA_P-littoralis_Contig1581.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1581.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1581contigP-littoralis_Contig1581:7733..8404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size265
Hectar predicted targeting categoryother localisation
Exons2
Cds size243
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789757.1931894-UTR-P-littoralis_Contig1581:7732..77541680789757.1931894-UTR-P-littoralis_Contig1581:7732..7754Pylaiella littoralis U1_48UTRP-littoralis_Contig1581 7733..7754 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789757.2083857-CDS-P-littoralis_Contig1581:7754..78071680789757.2083857-CDS-P-littoralis_Contig1581:7754..7807Pylaiella littoralis U1_48CDSP-littoralis_Contig1581 7755..7807 -
1680789757.2212868-CDS-P-littoralis_Contig1581:8214..84041680789757.2212868-CDS-P-littoralis_Contig1581:8214..8404Pylaiella littoralis U1_48CDSP-littoralis_Contig1581 8215..8404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1581.2.1prot_P-littoralis_Contig1581.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1581 7755..8404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1581.2.1

>prot_P-littoralis_Contig1581.2.1 ID=prot_P-littoralis_Contig1581.2.1|Name=mRNA_P-littoralis_Contig1581.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=81bp
SSLSQPYDKSCISCTTALLQELLHLVWSATATTAQCGSVNWTSDRATSST
ATSTASCVTALPKCHFQPAFRNGAAGSSGS*
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mRNA from alignment at P-littoralis_Contig1581:7733..8404-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1581.2.1 ID=mRNA_P-littoralis_Contig1581.2.1|Name=mRNA_P-littoralis_Contig1581.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=672bp|location=Sequence derived from alignment at P-littoralis_Contig1581:7733..8404- (Pylaiella littoralis U1_48)
TCTTCCCTGTCGCAGCCATACGACAAGTCGTGCATATCGTGCACGACTGC
CCTGCTACAGGAGCTTCTGCATCTGGTCTGGTCAGCGACGGCAACAACCG
CTCAGTGTGGCAGTGTAAACTGGACAAGCGATCGCGCTACCTCCTCAACG
GCTACTTCCACAGCATCGTGCGTGACCGCATTGCCTAAATGTGAGTCCAC
GCGATTCGATTGAAAGATATTCGCCACCTCCCCTCCTCCCAGACAACCCT
ATTGTTATATCCTATAAGCTATGAACGGCATGCTGTGGTTTGCAAATAAC
ACCAAATTTTACCCCCGCTCCCCCGCTCTGAAACCAAGTGCGGTCGAAAG
TCGTCAGCGATGGGGAACACATGTTCCGACGGGACGCAAAAGTAAAATCC
AATCATCTCATTTTTTAGTTTCATGCGTACTTGAACGAACACCGAGACCG
CTGATCGGTTGTTTCTCCGTGGTAGAATGCGCCAAAGACTTTTAAAAGGG
GCTGTGATATCCGGAAGAGTAATATTCACACTCCTCGACGACCCCCCCCC
CCCCCCCCAAACTACAACTGCCACCGACTTTCACCGATATTTAGCAGGTC
ATTTTCAACCCGCGTTCAGGAATGGGGCAGCCGGAAGCAGCGGTAGTTGA
GATACCGACGTCCTGCTCGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1581:7733..8404-

>mRNA_P-littoralis_Contig1581.2.1 ID=mRNA_P-littoralis_Contig1581.2.1|Name=mRNA_P-littoralis_Contig1581.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=243bp|location=Sequence derived from alignment at P-littoralis_Contig1581:7733..8404- (Pylaiella littoralis U1_48)
TCTTCCCTGTCGCAGCCATACGACAAGTCGTGCATATCGTGCACGACTGC
CCTGCTACAGGAGCTTCTGCATCTGGTCTGGTCAGCGACGGCAACAACCG
CTCAGTGTGGCAGTGTAAACTGGACAAGCGATCGCGCTACCTCCTCAACG
GCTACTTCCACAGCATCGTGCGTGACCGCATTGCCTAAATGTCATTTTCA
ACCCGCGTTCAGGAATGGGGCAGCCGGAAGCAGCGGTAGTTGA
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