mRNA_P-littoralis_Contig158.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.62.1
Unique NamemRNA_P-littoralis_Contig158.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig158.62.1 vs. uniprot
Match: D8LN40_ECTSI (60S ribosomal protein L7a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN40_ECTSI)

HSP 1 Score: 397 bits (1020), Expect = 2.820e-129
Identity = 207/219 (94.52%), Postives = 214/219 (97.72%), Query Frame = 2 
Query: 1106 QPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGNEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMGVPYCIVKGRARLGTLVHQKNAAVICLTSVNKEDESKLNTLKSNFNAQFNEGFQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 1762
            QPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFS+AIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAG EPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDV PIELVVWLPALCRKMG+PYCI+KG+ARLGTLVHQKNAAVICLT+VNKEDESKL+ LKSNF AQFNEGF RKWGGG+MGLKTQRKLEKRQKAIEAELAKKAQY
Sbjct:   38 QPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGKEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVTPIELVVWLPALCRKMGIPYCIMKGKARLGTLVHQKNAAVICLTTVNKEDESKLSNLKSNFTAQFNEGFVRKWGGGVMGLKTQRKLEKRQKAIEAELAKKAQY 256
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BLAST of mRNA_P-littoralis_Contig158.62.1 vs. uniprot
Match: A0A6V1R9A7_HETAK (60S ribosomal protein L7a n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R9A7_HETAK)

HSP 1 Score: 301 bits (771), Expect = 1.770e-92
Identity = 161/220 (73.18%), Postives = 190/220 (86.36%), Query Frame = 2 
Query: 1112 KVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEA-GNEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMGVPYCIVKGRARLGTLVHQKNAAVICLTSVNKEDESKLNTLKSNFNAQFNEGFQRKWGGGIMGLKTQRKLEKRQKAIEAELAKK--AQY 1762
            K DLSR+VKWPR +R+QRQRKIL+QRLKVPP+I QFSQ ++KNQATEL K+L+KYQPE KKAKQQRLKE+AAA    G +P P+     +K+GLKHVTTLIE+++A LV IAHDVNP+ELVVWLPALCRKMGVP+C+VK +ARLGTL H+KNAAV+ LT VNKED++KL+TL +NF AQFN+   RKWGGGIMGLKTQRKLEKRQKA+EAELAKK  AQY
Sbjct:   41 KRDLSRYVKWPRNVRIQRQRKILLQRLKVPPAIQQFSQPLEKNQATELFKLLVKYQPETKKAKQQRLKEMAAAGATKGEKPGPT-----LKYGLKHVTTLIEQKEAKLVCIAHDVNPLELVVWLPALCRKMGVPFCVVKDKARLGTLCHKKNAAVVALTEVNKEDKAKLDTLGANFTAQFNDTPVRKWGGGIMGLKTQRKLEKRQKALEAELAKKTSAQY 255
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BLAST of mRNA_P-littoralis_Contig158.62.1 vs. uniprot
Match: A0A0P1B814_PLAHL (60S ribosomal protein L7a n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1B814_PLAHL)

HSP 1 Score: 288 bits (738), Expect = 1.580e-87
Identity = 155/221 (70.14%), Postives = 179/221 (81.00%), Query Frame = 2 
Query: 1106 QPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGNEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMGVPYCIVKGRARLGTLVHQKNAAVICLTSVNKEDESKLNTLKSNFNAQFNE--GFQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 1762
            QPK DLSRFV+WPRY+RLQRQRKIL QRLKVPPSINQFS  +DKN AT+L K+L+KYQPE K AK  RL+ IAA K+    P     P V+KFGL HVT+LIE +KA LVVIAHDVNPIELVV+LPALCR+  +PYCIVKG+ARLG LVHQKNAAV+ LT VNKED++K ++L   F A+FNE    +RKWGGGIMGLKTQ+KLE R+KAI AE AKKAQY
Sbjct:   49 QPKRDLSRFVRWPRYVRLQRQRKILYQRLKVPPSINQFSNTVDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKQEATAP-----PAVVKFGLNHVTSLIENKKAKLVVIAHDVNPIELVVFLPALCRQFDIPYCIVKGKARLGQLVHQKNAAVVALTHVNKEDKAKFDSLSQVFRAKFNEDSATRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 264
[Close]
BLAST of mRNA_P-littoralis_Contig158.62.1 vs. uniprot
Match: F0Y2N8_AURAN (60S ribosomal protein L7a (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2N8_AURAN)

HSP 1 Score: 287 bits (735), Expect = 3.090e-87
Identity = 150/218 (68.81%), Postives = 176/218 (80.73%), Query Frame = 2 
Query: 1106 QPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGNEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMGVPYCIVKGRARLGTLVHQKNAAVICLTSVNKEDESKLNTLKSNFNAQFNEGFQ--RKWGGGIMGLKTQRKLEKRQKAIEAELAKK 1753
            QP  DLSRFVKWPRY+RLQRQ+KIL QRLKVPP++NQF+  +DKNQA EL K+LMKYQPEDK AK  R+K +A AK AG      KAP V+KFGLKHVT L+E +KA LV IA DV+PIELVVWLPALC+KM VPYCIVK ++RLGT+VHQK AAV CLT+V KED+  L+ L+SNF A +N+     RKWGGGIMGLKTQ KL KR+KA++AELAKK
Sbjct:   37 QPTRDLSRFVKWPRYVRLQRQKKILQQRLKVPPALNQFATTLDKNQAAELFKLLMKYQPEDKAAKADRVKALAEAKAAGGAAPEGKAPTVVKFGLKHVTYLVENKKAKLVCIASDVDPIELVVWLPALCKKMDVPYCIVKNKSRLGTVVHQKTAAVCCLTTVKKEDQHSLDQLRSNFKAMYNDNVAHARKWGGGIMGLKTQAKLAKREKALQAELAKK 254
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BLAST of mRNA_P-littoralis_Contig158.62.1 vs. uniprot
Match: A0A7S3HBR5_9STRA (60S ribosomal protein L7a n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBR5_9STRA)

HSP 1 Score: 286 bits (733), Expect = 6.910e-87
Identity = 146/214 (68.22%), Postives = 175/214 (81.78%), Query Frame = 2 
Query: 1118 DLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGNEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMGVPYCIVKGRARLGTLVHQKNAAVICLTSVNKEDESKLNTLKSNFNAQFNEGFQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQ 1759
            DLSR+V+WPRY+R+QRQ+KIL+QRLKVPPSINQF + +DKNQA+EL K+L+KYQPE K AK  RL+ +A A  A         P  +KFGLKHVTTLIE++KA LVVI HDV+PIELV+WLPALCRKM VP+ IVKG++RLGTL H+K  +V+CLTSVNKEDESKL TL  NF AQFN+  +RKWGGGIMGLKTQ KL+KR KA+E E AKKA+
Sbjct:   42 DLSRYVRWPRYVRIQRQKKILLQRLKVPPSINQFQRTLDKNQASELFKLLVKYQPETKAAKTTRLEALAQATAAKESTPSGPPPATLKFGLKHVTTLIEQKKAKLVVIPHDVDPIELVLWLPALCRKMNVPFAIVKGKSRLGTLTHKKTCSVVCLTSVNKEDESKLKTLGENFKAQFNDNVERKWGGGIMGLKTQAKLDKRAKALEVEEAKKAE 255
[Close]
BLAST of mRNA_P-littoralis_Contig158.62.1 vs. uniprot
Match: A0A3R7JAR0_9STRA (60S ribosomal protein L7a n=8 Tax=Peronosporaceae TaxID=4777 RepID=A0A3R7JAR0_9STRA)

HSP 1 Score: 286 bits (733), Expect = 8.740e-87
Identity = 151/221 (68.33%), Postives = 181/221 (81.90%), Query Frame = 2 
Query: 1106 QPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGNEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMGVPYCIVKGRARLGTLVHQKNAAVICLTSVNKEDESKLNTLKSNFNAQFNEG--FQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 1762
            QPK DLSRFV+WPRY+RLQRQRKIL QRLKVPPS+NQFS  +DKN AT+L K+L+KYQPE K AK  RL+ IAA KE  + P     P V+KFGL HVT+L+E +KA LVVIAHDV+PIELVV+LPALCR+  +PYCIVKG++RLG LVHQKNAAV+ LT VNKED++K ++L   F+A+FNE    +RKWGGGIMGLKTQ+KLE R+KA+ AE AKKAQY
Sbjct:   50 QPKRDLSRFVRWPRYVRLQRQRKILYQRLKVPPSVNQFSNTLDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PAVVKFGLNHVTSLVENKKAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIVKGKSRLGQLVHQKNAAVVALTHVNKEDKAKFDSLSEAFHAKFNEDSTIRRKWGGGIMGLKTQKKLELREKAVAAEAAKKAQY 265
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BLAST of mRNA_P-littoralis_Contig158.62.1 vs. uniprot
Match: K3WB90_GLOUD (60S ribosomal protein L7a n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WB90_GLOUD)

HSP 1 Score: 282 bits (721), Expect = 5.560e-85
Identity = 153/221 (69.23%), Postives = 178/221 (80.54%), Query Frame = 2 
Query: 1106 QPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGNEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMGVPYCIVKGRARLGTLVHQKNAAVICLTSVNKEDESKLNTLKSNFNAQFNEGF--QRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 1762
            QPK DLSRFV+WPRY+R+QRQRKIL QRLKVPPSINQF+  IDKN A +L K+L+KYQPE K AK  RL+ IAA KE  + P     P VIK+GL HVT+LIE +KA LVVIAHDVNPIELVV+LPALCRK  +PY IVKG+ARLG LVH+KNAAV+ LT VNKED+SK ++L S F  +FN+    +RKWGGGIMGLKTQ+KLE R+KAI AE AKKAQY
Sbjct:   54 QPKRDLSRFVRWPRYVRIQRQRKILYQRLKVPPSINQFTNTIDKNTAADLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PAVIKYGLNHVTSLIENKKAKLVVIAHDVNPIELVVFLPALCRKFDIPYTIVKGKARLGQLVHKKNAAVVALTHVNKEDKSKFDSLASAFKTKFNDDSTTRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 269
[Close]
BLAST of mRNA_P-littoralis_Contig158.62.1 vs. uniprot
Match: A0A7S0LF41_9EUKA (60S ribosomal protein L7a n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LF41_9EUKA)

HSP 1 Score: 281 bits (720), Expect = 5.570e-85
Identity = 142/214 (66.36%), Postives = 174/214 (81.31%), Query Frame = 2 
Query: 1118 DLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGNEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMGVPYCIVKGRARLGTLVHQKNAAVICLTSVNKEDESKLNTLKSNFNAQFNEGFQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQ 1759
            DLSR+V+WPRY+R+QRQ+K+L+QRLKVPPSINQF + +DKNQA+EL K+L+KYQPE K AK  RL+ +A A  A         P  +K+GLKHVTTLIE++KA LV+I+HDV+PIELV+WLPALCRKM VP+CIVKG++RLGTL H+K  +V+ LT+VN EDESKL TL  N   QFNE  +RKWGGGIMGLKTQ KL KR +AIEAELAKKA+
Sbjct:   43 DLSRYVRWPRYVRIQRQKKVLLQRLKVPPSINQFRRTLDKNQASELFKLLVKYQPETKAAKATRLETLAKATAAKENTTSGPPPATLKYGLKHVTTLIEQKKAKLVIISHDVDPIELVLWLPALCRKMNVPFCIVKGKSRLGTLTHKKTCSVVALTAVNNEDESKLKTLAENCRVQFNENVERKWGGGIMGLKTQAKLTKRAQAIEAELAKKAE 256
[Close]
BLAST of mRNA_P-littoralis_Contig158.62.1 vs. uniprot
Match: M4B6Z0_HYAAE (60S ribosomal protein L7a n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6Z0_HYAAE)

HSP 1 Score: 281 bits (718), Expect = 1.280e-84
Identity = 150/221 (67.87%), Postives = 179/221 (81.00%), Query Frame = 2 
Query: 1106 QPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGNEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMGVPYCIVKGRARLGTLVHQKNAAVICLTSVNKEDESKLNTLKSNFNAQFNEGF--QRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 1762
            QPK DLSRFV+WPRY+R+QRQRKIL QRLKVPPSINQFS A+DKN AT+L K+L+KYQPE K AK  RL+ IAA KE  + P     P V+KFGL HVTTLIE ++A LVVIAHDV+PIELVV+LPALCR+  +PYCI+KG+ARLG LVHQKNAA + LT VNKED++K ++L     A++N+    +RKWGGGIMGLKTQ+KLE R+KAI AE AKKAQY
Sbjct:   49 QPKRDLSRFVRWPRYVRIQRQRKILYQRLKVPPSINQFSYALDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PSVVKFGLNHVTTLIETKRAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIIKGKARLGQLVHQKNAAAVALTHVNKEDKAKFDSLAGVVRAKYNDDSTSRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 264
[Close]
BLAST of mRNA_P-littoralis_Contig158.62.1 vs. uniprot
Match: T0QDT5_SAPDV (60S ribosomal protein L7a n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0QDT5_SAPDV)

HSP 1 Score: 281 bits (718), Expect = 1.370e-84
Identity = 162/278 (58.27%), Postives = 200/278 (71.94%), Query Frame = 2 
Query:  935 VPSQNIDRYLRYTSVPGSESLGKPSCRCGLFNSVLADLAYSTCSAPRYTLAQRRIM*QPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGNEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMGVPYCIVKGRARLGTLVHQKNAAVICLTSVNKEDESKLNTLKSNFNAQFNEG--FQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 1762
            +PS+ + +    T  P +    KP+ +        AD  +   SAP+       I  QPK DLSRFV+WP+ +RLQRQ KIL  RLKVPPSINQF+  +DKN AT+L K+L+KYQPE K AK QRL++IAA KE  + P     P VIK+GL HVT+LIE +KA +V IAHDV PIELVV+LPALCRKM +PYCIVKG+ARLG LVH+KNAAV+ LT VNKED++K ++L + F AQFN+    +RKWGGGIMGLKTQ+KLE R KA+ AELAKKAQY
Sbjct:    1 MPSKKVLKGASTTQKPAA---AKPAAKSTASKKKGADPLFP--SAPKNFRLGGDI--QPKRDLSRFVRWPKNVRLQRQHKILTTRLKVPPSINQFTNTLDKNAATDLYKLLLKYQPESKAAKTQRLRDIAAGKEQVSAP-----PAVIKYGLNHVTSLIENKKAKMVCIAHDVTPIELVVFLPALCRKMDIPYCIVKGKARLGQLVHKKNAAVVALTQVNKEDKAKFDSLNTAFRAQFNDESTHRRKWGGGIMGLKTQKKLELRAKAVAAELAKKAQY 266
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN40_ECTSI2.820e-12994.5260S ribosomal protein L7a n=2 Tax=Ectocarpus TaxID... [more]
A0A6V1R9A7_HETAK1.770e-9273.1860S ribosomal protein L7a n=2 Tax=Heterosigma akas... [more]
A0A0P1B814_PLAHL1.580e-8770.1460S ribosomal protein L7a n=2 Tax=Peronosporaceae ... [more]
F0Y2N8_AURAN3.090e-8768.8160S ribosomal protein L7a (Fragment) n=1 Tax=Aureo... [more]
A0A7S3HBR5_9STRA6.910e-8768.2260S ribosomal protein L7a n=1 Tax=Spumella elongat... [more]
A0A3R7JAR0_9STRA8.740e-8768.3360S ribosomal protein L7a n=8 Tax=Peronosporaceae ... [more]
K3WB90_GLOUD5.560e-8569.2360S ribosomal protein L7a n=2 Tax=Pythiaceae TaxID... [more]
A0A7S0LF41_9EUKA5.570e-8566.3660S ribosomal protein L7a n=1 Tax=Coccolithus braa... [more]
M4B6Z0_HYAAE1.280e-8467.8760S ribosomal protein L7a n=1 Tax=Hyaloperonospora... [more]
T0QDT5_SAPDV1.370e-8458.2760S ribosomal protein L7a n=3 Tax=Saprolegniaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:261656..265427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LN40
Preferred nameDOCK4
PFAMsDHR-2,DOCK-C2,DOCK_N,Ribosomal_L7Ae
Model size2643
Max annot lvl2759|Eukaryota
KEGG rclassRC00020,RC00041
KEGG koko:K01054,ko:K02936,ko:K08272,ko:K11649,ko:K17697
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko03010,ko04015,ko04150,ko04152,ko04714,ko04723,ko04923,ko05225,map00561,map01100,map03010,map04015,map04150,map04152,map04714,map04723,map04923,map05225
KEGG ModuleM00098,M00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000470,GO:0000491,GO:0000492,GO:0002181,GO:0003008,GO:0003013,GO:0003018,GO:0003056,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005096,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006937,GO:0006940,GO:0008015,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009987,GO:0010467,GO:0012505,GO:0014910,GO:0014911,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016477,GO:0017016,GO:0017048,GO:0019229,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030054,GO:0030165,GO:0030234,GO:0030334,GO:0030335,GO:0030515,GO:0030695,GO:0030971,GO:0031090,GO:0031267,GO:0031974,GO:0031981,GO:0032420,GO:0032421,GO:0032501,GO:0032879,GO:0032991,GO:0034470,GO:0034512,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035150,GO:0035296,GO:0040011,GO:0040012,GO:0040017,GO:0042221,GO:0042254,GO:0042273,GO:0042330,GO:0042788,GO:0042995,GO:0043005,GO:0043043,GO:0043085,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043547,GO:0043603,GO:0043604,GO:0043933,GO:0044057,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045906,GO:0045932,GO:0045986,GO:0046483,GO:0048365,GO:0048518,GO:0048519,GO:0048522,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050880,GO:0050896,GO:0051020,GO:0051179,GO:0051239,GO:0051241,GO:0051270,GO:0051272,GO:0051336,GO:0051345,GO:0051674,GO:0051716,GO:0055044,GO:0060326,GO:0060589,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090066,GO:0090257,GO:0090304,GO:0097159,GO:0097458,GO:0097746,GO:0097755,GO:0098588,GO:0098772,GO:0098805,GO:0098858,GO:0098862,GO:0120025,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903522,GO:1903523,GO:1904694,GO:1904752,GO:1904754,GO:1990782,GO:1990904,GO:2000145,GO:2000147
Exons4
Evalue7.31e-102
EggNOG OGsCOG1358@1|root,KOG3166@2759|Eukaryota
EC3.1.1.23
Descriptionmaturation of LSU-rRNA
Cds size498
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01002,ko03009,ko03011,ko03021,ko03036,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.62.1prot_P-littoralis_Contig158.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 263318..264549 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789755.725789-UTR-P-littoralis_Contig158:261655..2628291680789755.725789-UTR-P-littoralis_Contig158:261655..262829Pylaiella littoralis U1_48UTRP-littoralis_Contig158 261656..262829 +
1680789755.736269-UTR-P-littoralis_Contig158:263224..2633171680789755.736269-UTR-P-littoralis_Contig158:263224..263317Pylaiella littoralis U1_48UTRP-littoralis_Contig158 263225..263317 +
1680789755.7779198-UTR-P-littoralis_Contig158:264549..2654271680789755.7779198-UTR-P-littoralis_Contig158:264549..265427Pylaiella littoralis U1_48UTRP-littoralis_Contig158 264550..265427 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789755.7489989-CDS-P-littoralis_Contig158:263317..2634221680789755.7489989-CDS-P-littoralis_Contig158:263317..263422Pylaiella littoralis U1_48CDSP-littoralis_Contig158 263318..263422 +
1680789755.759419-CDS-P-littoralis_Contig158:263756..2639151680789755.759419-CDS-P-littoralis_Contig158:263756..263915Pylaiella littoralis U1_48CDSP-littoralis_Contig158 263757..263915 +
1680789755.7690847-CDS-P-littoralis_Contig158:264315..2645491680789755.7690847-CDS-P-littoralis_Contig158:264315..264549Pylaiella littoralis U1_48CDSP-littoralis_Contig158 264316..264549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.62.1

>prot_P-littoralis_Contig158.62.1 ID=prot_P-littoralis_Contig158.62.1|Name=mRNA_P-littoralis_Contig158.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=166bp
MKYQPEDKKAKQQRLKEIAAAKEAGNEPAPSKAPKVIKFGLKHVTTLIEE
QKASLVVIAHDVNPIELVVWLPALCRKMGVPYCIVKGRARLGTLVHQKNA
AVICLTSVNKEDESKLNTLKSNFNAQFNEGFQRKWGGGIMGLKTQRKLEK
RQKAIEAELAKKAQY*
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mRNA from alignment at P-littoralis_Contig158:261656..265427+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.62.1 ID=mRNA_P-littoralis_Contig158.62.1|Name=mRNA_P-littoralis_Contig158.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3772bp|location=Sequence derived from alignment at P-littoralis_Contig158:261656..265427+ (Pylaiella littoralis U1_48)
CAGGTCAAGTCCACCCCTAAAAAGGTGGCTGACCCCCTCTTCCCCGCCAA
GAGGAAGAGCTTCCGCATCGGTCGCGACATCCAGGTAACACATGCCTGAC
AGGCGTTTTTGCCGTGAAGGGGACGGACGAACACAATCCCCTCTCCTTCT
CAGGCTTCTTAGCGACTGGCCAGTCGCGATGACACAAAGTCTACGGCCCC
CGGCGGAAAAGGAAGCATTCAGTGTTTTGAAGCGTCTCCTGTTCTGCTCT
GTCACTTGCTCTTTCCTTTCTTCCTTCTCCCGGTTTCTTTTCGTGCATAC
TGTCCCCTTGCTCCTGACCTTCGATCGCCGTAACACGGTGCGTTGGAGAA
GGCGAGAGGGGACGGTGTGTTGCGCAAAGGAAGCCGAGGGTGGAGGATCG
GAGGCGTGTGTGCAGGCAGACGGGGTATTCCCGGGTAATCAACCATTTTC
GAAGTTCTCTCAAAGGTTCTGAGAGAAAATAGTAGCGGCAGTTCCACCGC
GCCGTGATGACACAAGTAGCGGTGGTAGGATTAGCGCTGTCGCCCCGAGC
GTTATGAAACAAATGCGGTGGTTCACTAGGCAAGTCTTTGAGACGAGCGG
TTGCAAAAGCCGCGTTTTTCGACGATCCTAGAATGCGGCGCACGTCTTAG
GCGCTAAAAATTGAATGCTCGCTATTGTCGATGGTCGCGGCTACTGTTCA
AGCCCAGCCGAACTGTAGTGACTGTCCTCGTAGGCTTGAGACGCACCTTA
GACACTGTCAGGGAAGGGTTTGGCGTTCCCGTCTTTTTCTAGTGTCTCGA
TGTTGGCGTGTGTTGTACACACACGGCAGCGACTGTCATCTCATTTCACG
TTGCGGTTGTACACTTGTGTGTGTACAAGTTATGTTTAGCGTGAAGTCCC
CGGGCACGCGGATTTCCCACGTCGTTGCCCAACCGTTCCTAGCCAAAACA
TTGACAGGTATTTGAGGTACACATCTGTACCCGGATCGGAAAGCCTAGGC
AAACCGAGTTGTCGTTGTGGCCTGTTCAATTCTGTCCTCGCTGACCTCGC
ATATTCTACCTGCTCTGCACCCCGTTACACACTTGCCCAACGGCGAATAA
TGTAACAGCCCAAGGTTGACCTGTCGCGGTTCGTGAAGTGGCCTCGCTAC
ATCCGCCTTCAGCGCCAGCGCAAGGTGAGATTTTTTTAATCGTTCCGCAA
TATCCGTGCCGTTTTCCATGACAGGTCATCCGATCCCGTGTGTAGTTGGC
TTTTTTGTTCCCCGATCGCCCGTAGTGGTGGATCGCAAACCACAAAGTTT
ACCCGGTTTTGAGAGGCCGTTTATTTTATTTTCCACATGTATTTGTCCTC
GCCAAGTCTCCCGACGCTAACGTTACAGGACCCGTTCCTTTGCGTTACCT
TTTCGTTGTCGCTGGTTGTCAGTTCTTGACGTTTTTGTGTCATGAGCCCC
ACAAGTTGCTGATTTTCCCCCGAGCCACATTTTTGACCCCTCGTGACAAT
GTTGAATCTTGACTTTCCTGCCCGTTTCACGGTCTTGGGTTTTCTCCTTT
TCTTCTCGCACTTGAGCAGATCCTGGTGCAGCGCCTCAAGGTGCCTCCGT
CGATCAACCAGTTCTCCCAGGCCATCGACAAGAACCAGGCGACGGAGCTC
CTCAAGGTCCTCATGAAGTACCAGCCGGAGGACAAGAAGGCGAAGCAGCA
GCGCCTCAAGGAGATCGCCGCCGCTAAGGAGGCCGGCAACGAGCCTGCCC
CTTCCAAGGCACCCAAGGTTCGAGCCAGCAGGATTCAGTCAGTGGCACCT
TCAACTCTTTTATGAAAGTCTGGAAATTTGTTTTTCAAGTCTCCGATCGT
GTGAACGAGTAAAAGAGCTTGATGTACCGCCCGCTTCAAATATTGTGAAA
GAACGTAAAGAGCGAGTCTACCTCCATTGAACGAATACGAAGTATGCAAC
GAATACCCCCCCACACCATGTGTTTGAGTTTCCGTGGCCGTAAACCCGCG
GTACTAGTGCTCATGTAATTCAGAGCGAAAAGCAGGGTACTCATCAGGAG
ATGCCGATTCATGTAGCTCATGTGCCTACGTGATCTGCATGTTTCGCGCA
GGTGATCAAGTTCGGCCTCAAGCACGTGACCACCCTCATCGAAGAGCAAA
AGGCGTCGCTCGTTGTGATCGCGCACGACGTGAACCCCATAGAGCTGGTG
GTCTGGCTTCCTGCCCTCTGCCGCAAGATGGGCGTGCCCTACTGCATCGT
CAAGGGCAGGGTGAGAAAGCCACAGCTGCATAAGAATAAACGAACGTTCG
GCGGTGTTTTCAACACGACGGGGATGTTTCTGAAGTACGTTTACGTAATG
TCCGGTATTACATGACGTTCGGACACGCAAGAAGCTTGACGTTGTTGGTA
ATCGTAGTGTTCCGTGTCTCCTCCCGCACTCGTCACTGCTACATTCGCCT
CCTACTGAACACCGCGATGTTGTTATAGTACACATGTTGAAGCGGGGCTC
ATGGCTTGTTTTTCACGTGAGCGTACTTGAAAGTCACTCCGCGCGCGCGA
AAATCTACGTCAGCCCCGTGGGCCATTATTCGGGGGTTCTTTTGGGTGAC
ATGAAATTTTGTCCGTGCTGATCAATGATGCTTATCTTTTGACCCTTTTC
CACGATGCAGGCTCGCCTCGGTACCCTGGTGCACCAGAAGAACGCCGCGG
TCATCTGCCTGACCTCCGTCAACAAGGAAGACGAGTCCAAGTTGAACACC
TTGAAGTCCAACTTCAACGCCCAGTTCAACGAGGGCTTCCAGAGGAAGTG
GGGCGGGGGTATCATGGGTCTCAAGACCCAGCGCAAGCTGGAGAAGAGGC
AGAAGGCCATCGAGGCCGAGCTTGCGAAGAAGGCTCAGTACTAGTTGAAT
CTTGTTCTTCCCCCCTTCTCTCTTCTTGATAGTTGGGTTCTTTTCTCTTG
GCACTTTCTGACAAGCTGAGGTACTTGCCGAGATTGGCTACGTTGCGGCT
CTGCTTTTTGAGGCCGTTGTATGGAATCATTTTGGCAGCGCCATAATGGT
CCTGGCAAGTCTTGTTTGATGAACTGGGGGAAGAGGGGAATCTGACTGGA
TTGTGCGTTGTCTGGCGGCGAAGTGATCCAACACGTTGAGGCTGAAAACG
TAAAAACAACACCGACGCATGTCATCATGGCGTCGTGAATACCCTTGGCT
CTCTCATCGACTGGCTTGGCCTGTGTCCTGTGTCCTGGAAGAACGAGGGT
CAGGCATGTCTCGTCTTGACACCAACAAATGCCCGTTATTTTGAACGTGG
CCCTCTAGTCGGGTGAAGTTGCATCCTTTCACAGCAGTCGGAGCATCCAT
GGTGATCACTCAACTGGCCGGTGTTGCTGTCGTGATCGTGGCATTGCATT
TTACACGAAACTCTTGTCTGCTGAGATGCCGGGAAGTATGTCATGGGTGG
CATGCACGAGGCTTTGCCGCCGACAAAGCAAGGGTAGTACAGACAAACAT
GTTGCCTCGAATCAGACTGGCGGAAGAAGCCTCCGAAACACGTGGTTCCA
TTGCCAGCCCCAAGAGAGGCGAAAAAAACACAAAACCAGTGCAGTACGTA
GTTGGAAATGCCAAAAACTCCCGAGTCGGTGACACGCCCTGTACAGAAAC
CAGCCGAGTCGCCCCCGTTGCTGATTGACGGTGAGTTCAGTGAATACCCC
TTTCGATGACCATCTAACCCATCGTTTTGTACAATGACGATATTGGAAAC
ACAAGAGTGTCGAACGAGGCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:261656..265427+

>mRNA_P-littoralis_Contig158.62.1 ID=mRNA_P-littoralis_Contig158.62.1|Name=mRNA_P-littoralis_Contig158.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig158:261656..265427+ (Pylaiella littoralis U1_48)
ATGAAGTACCAGCCGGAGGACAAGAAGGCGAAGCAGCAGCGCCTCAAGGA
GATCGCCGCCGCTAAGGAGGCCGGCAACGAGCCTGCCCCTTCCAAGGCAC
CCAAGGTGATCAAGTTCGGCCTCAAGCACGTGACCACCCTCATCGAAGAG
CAAAAGGCGTCGCTCGTTGTGATCGCGCACGACGTGAACCCCATAGAGCT
GGTGGTCTGGCTTCCTGCCCTCTGCCGCAAGATGGGCGTGCCCTACTGCA
TCGTCAAGGGCAGGGCTCGCCTCGGTACCCTGGTGCACCAGAAGAACGCC
GCGGTCATCTGCCTGACCTCCGTCAACAAGGAAGACGAGTCCAAGTTGAA
CACCTTGAAGTCCAACTTCAACGCCCAGTTCAACGAGGGCTTCCAGAGGA
AGTGGGGCGGGGGTATCATGGGTCTCAAGACCCAGCGCAAGCTGGAGAAG
AGGCAGAAGGCCATCGAGGCCGAGCTTGCGAAGAAGGCTCAGTACTAG
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