mRNA_P-littoralis_Contig158.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.26.1
Unique NamemRNA_P-littoralis_Contig158.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:41269..42968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size309
Hectar predicted targeting categoryother localisation
Exons2
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789752.5045905-CDS-P-littoralis_Contig158:41268..415201680789752.5045905-CDS-P-littoralis_Contig158:41268..41520Pylaiella littoralis U1_48CDSP-littoralis_Contig158 41269..41520 +
1680789752.5162046-CDS-P-littoralis_Contig158:42912..429661680789752.5162046-CDS-P-littoralis_Contig158:42912..42966Pylaiella littoralis U1_48CDSP-littoralis_Contig158 42913..42966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.26.1prot_P-littoralis_Contig158.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 41269..42966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.26.1

>prot_P-littoralis_Contig158.26.1 ID=prot_P-littoralis_Contig158.26.1|Name=mRNA_P-littoralis_Contig158.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
FPGRRKALKLPQKSPKLSASRRVSSRSVVPGCASYTASFHYDRPRRFSSW
GALCLYHRTITQTLAYSRNFHEPSPAGYGRVQGKAFRFHTIFFRRCLTMR
IL
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mRNA from alignment at P-littoralis_Contig158:41269..42968+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.26.1 ID=mRNA_P-littoralis_Contig158.26.1|Name=mRNA_P-littoralis_Contig158.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1700bp|location=Sequence derived from alignment at P-littoralis_Contig158:41269..42968+ (Pylaiella littoralis U1_48)
TTCCCGGGGCGACGCAAGGCTCTGAAGCTGCCGCAGAAGTCACCCAAGTT
ATCTGCTTCCAGAAGAGTTTCCTCAAGGAGCGTGGTGCCCGGATGCGCCT
CATATACAGCATCCTTTCATTACGATCGACCCCGAAGGTTTTCAAGCTGG
GGGGCCCTCTGTCTATACCACCGCACCATCACACAGACGTTAGCATACAG
TAGAAATTTCCACGAACCAAGCCCTGCGGGTTACGGTCGGGTTCAAGGCA
AGGTATGTGGTATATCGGGCATGCGGGCGTGCAATTCGATAATCATTTGT
AGATTGTTTGCAGCTTATCGTCGCGGAATTGGAGCCGCCTCATTATCTCA
GAAATCTAAATTTGCCTTCAAAATGCGCTGATCGGCCGCATTTTATTGGC
TGTGTTATTTTTGTGGTGTGTACAACGTGTACTCCTGCAGCCTGTTGTGT
TTCTGCAGCCCGACTTTCTCATGCTTTGCAATCGCCTCGTTAGAACTGCT
GTGTAATCAACTGTTTTTAAAGCGCAGCAGAGGCGGCGGAACAACCTCCT
CGTCCTTGTGTGGAGGACTAACCTTTACAAACAGCAGCAGAGCAGTCAAC
TTAATTTTGACAAACTTTAAAGTTGAGCAGGAATCTTCATTTTCTAAAAG
CGCGCATTGTACTGCGCAAAGAGTTTATCCATAACAACAATACAGTTGGT
ATGTGGATGCCAGGATATCGAACCTTGTTTACACACCGTACTCATATCAA
CATTATTTTGGTGGCGCGCATCATGTCGATAAACCGGCAGTGGTCGACTC
GAACGTTTGGCACGATACACGACCGCCGCCACTAAGTAAGATGTGTGGAG
ACCCTTGGGGCATTGTCATCCTCACGGTATATCTACAGTATTTCTGGACT
CAAGGGATTCATCAGTTGCTGCGCACTGCTGACGGAATCGGGGTTGTCGG
GGAAAAACAGTCCACGATGACTTGACTCCACTCCCGTCCTTACCCCAGCT
TATCTGAGTTCGCTCGGAGACGCTTGGCATTCCTCGCCTCCGTGATGGGT
CAGGACCGCGCCTGTCCGCGTACGCATAACCTAAAATGGCGTCGACGAAG
AGACTCGGACTCTCACGGGTACATCTTAACGGATTAGCTATTATTGTTGT
TCATGGTGTTGCAGTTGTCCCCGGTAGAAAAGTGGCACGCATTTTTCTGA
TTCAGCTACGATAGATTGCCATGCAGTAATATTTTTATCATACCAAGCAT
AATACTCGCAGCTCCATGAACCCGACGCCTGTGTGGTGCAGTAGAGACCC
TCCGCTTATATTCCGCGCTCATTTAGGTCGAAGTGCTAGAAGAAGAGGGT
GCAACTGGTATGTGTATATGTGCGTGTTTTCGTCCCATCTAATCTGGGCA
CCAGCTACACCTTTCGGCGGTAGTGGGCGCACCAGTCGGGGTTACACACA
AGGAAGGTTGATTGATCGTTTTTTCCTCCACCCACCTTCTGCGGTGCCTG
TGGTAGCCTTTATCGCGACGGTGCTTGTCTTTAGTTCCATCGCGAAAAGG
TGGACGGCAATAAATGGTGCTGTTCATCACGGATCAGAACGAGTGGTAGA
ATTGATAGCTATGTTTCCTCGCTAACCCTTGTATCATCCTGCAGGCGTTT
CGATTCCACACGATCTTCTTCAGGAGGTGCCTCACAATGCGCATTTTGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:41269..42968+

>mRNA_P-littoralis_Contig158.26.1 ID=mRNA_P-littoralis_Contig158.26.1|Name=mRNA_P-littoralis_Contig158.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig158:41269..42968+ (Pylaiella littoralis U1_48)
TTCCCGGGGCGACGCAAGGCTCTGAAGCTGCCGCAGAAGTCACCCAAGTT
ATCTGCTTCCAGAAGAGTTTCCTCAAGGAGCGTGGTGCCCGGATGCGCCT
CATATACAGCATCCTTTCATTACGATCGACCCCGAAGGTTTTCAAGCTGG
GGGGCCCTCTGTCTATACCACCGCACCATCACACAGACGTTAGCATACAG
TAGAAATTTCCACGAACCAAGCCCTGCGGGTTACGGTCGGGTTCAAGGCA
AGGCGTTTCGATTCCACACGATCTTCTTCAGGAGGTGCCTCACAATGCGC
ATTTTG
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