mRNA_P-littoralis_Contig1577.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1577.1.1
Unique NamemRNA_P-littoralis_Contig1577.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1577.1.1 vs. uniprot
Match: A0A496ZBS8_9DELT (UPF0102 protein DRH90_14980 n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A496ZBS8_9DELT)

HSP 1 Score: 67.0 bits (162), Expect = 6.220e-12
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   10 EKAAANYLRRKRYKVVETNVSTPVGEIDIVAVDDRTVVFVEVKTRRSNKKGSHGKQLISPNEKTAAPCRSLF 225
            E+ A  YL++K YKV+E N + PVGEIDI+A D +T++FVEVKTRRS   GS  +  I+P ++      +L+
Sbjct:   12 EELAVRYLKKKGYKVLEQNYTCPVGEIDIIARDKKTIIFVEVKTRRSMSYGS-ARLAITPRKQRKISMTALY 82          
BLAST of mRNA_P-littoralis_Contig1577.1.1 vs. uniprot
Match: A0A7X7ISK2_9BACT (UPF0102 protein GX621_17605 n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7X7ISK2_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 9.580e-12
Identity = 31/62 (50.00%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   10 EKAAANYLRRKRYKVVETNVSTPVGEIDIVAVDDRTVVFVEVKTRRSNKKGSHGKQLISPNE 195
            E  AA YLRR+RYK++  +V  P GE+D+VA+D +T+VFVEVKTR+S+++G H  + ++P +
Sbjct:   25 EALAARYLRRRRYKILGRHVRLPSGELDLVALDGKTIVFVEVKTRQSDRQG-HPSEAVTPEK 85          
BLAST of mRNA_P-littoralis_Contig1577.1.1 vs. uniprot
Match: A0A1F6GWG7_9BACT (UPF0102 protein A2798_02390 n=1 Tax=Candidatus Levybacteria bacterium RIFCSPHIGHO2_01_FULL_37_17 TaxID=1798588 RepID=A0A1F6GWG7_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 4.600e-11
Identity = 37/97 (38.14%), Postives = 55/97 (56.70%), Query Frame = 1
Query:    1 RIREKAAANYLRRKRYKVVETNVSTPVGEIDIVAVDDRTVVFVEVKTRRSNKKGSHGKQLISPNEKTAAPCRSLFETGRFE*PESSF*HRVGNLAGR 291
            R+ EK AA YL ++ YK++E N     GEIDI+A+DD+T+VFVEVKT+ SNK G+  + +     K        ++    E PE+     VG +  +
Sbjct:    9 RLGEKLAAEYLEKQGYKIIERNFRKGWGEIDIIALDDKTLVFVEVKTKTSNKFGTPFEAMTPFKIKALERTAMFYKKLHPELPEALRIDAVGVVLSK 105          
BLAST of mRNA_P-littoralis_Contig1577.1.1 vs. uniprot
Match: A0A5C9CFH5_9BACT (UPF0102 protein FD138_1333 n=4 Tax=Planctomycetes TaxID=203682 RepID=A0A5C9CFH5_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 6.040e-11
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = 1
Query:   10 EKAAANYLRRKRYKVVETNVSTPVGEIDIVAVDDRTVVFVEVKTRRS 150
            E+AAA +L+R+ Y++V+ N STP+GEIDIVA+D  T+VFVEVKTR S
Sbjct:   14 ERAAAKFLKRQGYRIVQRNYSTPLGEIDIVALDGTTIVFVEVKTRAS 60          
BLAST of mRNA_P-littoralis_Contig1577.1.1 vs. uniprot
Match: A0A1W9PW51_9DELT (UPF0102 protein B5M56_06055 n=1 Tax=Desulfococcus sp. 4484_241 TaxID=1968522 RepID=A0A1W9PW51_9DELT)

HSP 1 Score: 63.2 bits (152), Expect = 1.910e-10
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   10 EKAAANYLRRKRYKVVETNVSTPVGEIDIVAVDDRTVVFVEVKTRRSNKKGSHGKQLISPNEKTAAPCRSLFETGRF 240
            E  AA +L ++ YK+V+ N  TPVGEIDI+A D +T+VFVEVK RR+N+ G       +P   TA   R + +T ++
Sbjct:   13 EDLAARFLAKRGYKIVDRNYRTPVGEIDIIAKDRKTMVFVEVKARRTNRFGG------APYSITADKKRKITKTAQW 83          
BLAST of mRNA_P-littoralis_Contig1577.1.1 vs. uniprot
Match: A0A2G6G1W7_9BACT (YraN family protein (Fragment) n=1 Tax=bacterium DOLZORAL124_64_63 TaxID=2044883 RepID=A0A2G6G1W7_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 2.290e-10
Identity = 30/63 (47.62%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 RIREKAAANYLRRKRYKVVETNVSTPVGEIDIVAVDDRTVVFVEVKTRRSNKKGSHGKQLISP 189
            R  EK A +YL+R+ Y+++  N  TP+GE+DI+A D +T+VFVEVK RR+++ G H K  ++P
Sbjct:   10 RKNEKLALDYLKRQGYRILTRNYRTPMGEVDIIAEDGQTIVFVEVKARRTDRFG-HPKVAVTP 71          
BLAST of mRNA_P-littoralis_Contig1577.1.1 vs. uniprot
Match: A0A3A0D4V3_9BACT (UPF0102 protein DCC67_18665 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0D4V3_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 2.600e-10
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 1
Query:   10 EKAAANYLRRKRYKVVETNVSTPVGEIDIVAVDDRTVVFVEVKTRRS 150
            E+ AA +LRR+RYKVV T      GEIDIVAVD RT+VFVEVKTRRS
Sbjct:   18 ERRAARHLRRQRYKVVATRRRLRYGEIDIVAVDGRTIVFVEVKTRRS 64          
BLAST of mRNA_P-littoralis_Contig1577.1.1 vs. uniprot
Match: A0A2E1KTR4_9PLAN (UPF0102 protein CMJ59_24375 n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E1KTR4_9PLAN)

HSP 1 Score: 63.9 bits (154), Expect = 2.880e-10
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1
Query:   10 EKAAANYLRRKRYKVVETNVSTPVGEIDIVAVDDRTVVFVEVKTRRSNKKGS 165
            E AAA YL+RK  ++V  +V  P+GEID+VA+DD TVVFVEVKTRRS + G+
Sbjct:   59 EAAAARYLKRKGLRIVGRSVRAPLGEIDLVALDDGTVVFVEVKTRRSMRTGT 110          
BLAST of mRNA_P-littoralis_Contig1577.1.1 vs. uniprot
Match: A0A2E7K7M1_9PLAN (UPF0102 protein CME32_05765 n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K7M1_9PLAN)

HSP 1 Score: 62.4 bits (150), Expect = 4.850e-10
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   10 EKAAANYLRRKRYKVVETNVSTPVGEIDIVAVDDRTVVFVEVKTRRSNKKGSHGKQLISPNEKTAAPCRSLF 225
            E+AA  YL++ RY+++     T +GEIDI+A+D  TVVFVEVKTR+S  KG   + +    +K       +F
Sbjct:   15 ERAAVRYLKQHRYQILARQYRTELGEIDIIALDQETVVFVEVKTRKSTAKGQPFESVTGQKQKQLTRLAGVF 86          
BLAST of mRNA_P-littoralis_Contig1577.1.1 vs. uniprot
Match: A0A7C3JRK1_9DELT (UPF0102 protein ENR91_03200 n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C3JRK1_9DELT)

HSP 1 Score: 62.0 bits (149), Expect = 5.610e-10
Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   10 EKAAANYLRRKRYKVVETNVSTPVGEIDIVAVDDRTVVFVEVKTRRSNKKGSHGKQLISPNEKTAAPCRSLF 225
            EKAA ++L +K YK+VE N   P+GEID++A+D R +VFVEVKTR     G+  + ++   +K      + F
Sbjct:   15 EKAAEHFLTKKGYKLVERNYRCPLGEIDLIALDGRVIVFVEVKTRSGEGFGTPSEAVVPWKQKKMIKAATFF 86          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1577.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A496ZBS8_9DELT6.220e-1247.22UPF0102 protein DRH90_14980 n=1 Tax=Deltaproteobac... [more]
A0A7X7ISK2_9BACT9.580e-1250.00UPF0102 protein GX621_17605 n=1 Tax=Pirellulaceae ... [more]
A0A1F6GWG7_9BACT4.600e-1138.14UPF0102 protein A2798_02390 n=1 Tax=Candidatus Lev... [more]
A0A5C9CFH5_9BACT6.040e-1163.83UPF0102 protein FD138_1333 n=4 Tax=Planctomycetes ... [more]
A0A1W9PW51_9DELT1.910e-1044.16UPF0102 protein B5M56_06055 n=1 Tax=Desulfococcus ... [more]
A0A2G6G1W7_9BACT2.290e-1047.62YraN family protein (Fragment) n=1 Tax=bacterium D... [more]
A0A3A0D4V3_9BACT2.600e-1070.21UPF0102 protein DCC67_18665 n=1 Tax=Planctomycetes... [more]
A0A2E1KTR4_9PLAN2.880e-1061.54UPF0102 protein CMJ59_24375 n=2 Tax=Planctomycetac... [more]
A0A2E7K7M1_9PLAN4.850e-1041.67UPF0102 protein CME32_05765 n=6 Tax=Gimesia TaxID=... [more]
A0A7C3JRK1_9DELT5.610e-1041.67UPF0102 protein ENR91_03200 n=1 Tax=Deltaproteobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1577contigP-littoralis_Contig1577:340..685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1121918.ARWE01000001_gene850
PFAMsUPF0102
Model size346
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K07460
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.13e-10
EggNOG OGsCOG0792@1|root,COG0792@2|Bacteria,1N6VN@1224|Proteobacteria,42VES@68525|delta/epsilon subdivisions,2WRSC@28221|Deltaproteobacteria,43SNW@69541|Desulfuromonadales
DescriptionUncharacterised protein family UPF0102
Cds size246
COG categoryL
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789752.05313-CDS-P-littoralis_Contig1577:339..5851680789752.05313-CDS-P-littoralis_Contig1577:339..585Pylaiella littoralis U1_48CDSP-littoralis_Contig1577 340..585 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789752.0706425-UTR-P-littoralis_Contig1577:585..6851680789752.0706425-UTR-P-littoralis_Contig1577:585..685Pylaiella littoralis U1_48UTRP-littoralis_Contig1577 586..685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1577.1.1prot_P-littoralis_Contig1577.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1577 340..585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1577.1.1

>prot_P-littoralis_Contig1577.1.1 ID=prot_P-littoralis_Contig1577.1.1|Name=mRNA_P-littoralis_Contig1577.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
RIREKAAANYLRRKRYKVVETNVSTPVGEIDIVAVDDRTVVFVEVKTRRS
NKKGSHGKQLISPNEKTAAPCRSLFETGRFE*
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mRNA from alignment at P-littoralis_Contig1577:340..685+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1577.1.1 ID=mRNA_P-littoralis_Contig1577.1.1|Name=mRNA_P-littoralis_Contig1577.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=346bp|location=Sequence derived from alignment at P-littoralis_Contig1577:340..685+ (Pylaiella littoralis U1_48)
AGAATCAGGGAGAAAGCGGCCGCAAATTATTTGCGGAGAAAGCGATACAA AGTTGTCGAAACCAATGTATCAACGCCGGTGGGGGAGATCGACATCGTCG CCGTGGATGATCGGACCGTTGTTTTCGTCGAAGTCAAAACTCGACGGTCT AATAAAAAGGGGAGCCATGGGAAGCAGTTGATCTCGCCAAACGAAAAAAC TGCTGCACCTTGCCGAAGCTTATTTGAAACGGGAAGATTTGAATGACCAG AAAGCTCGTTTTGACATCGTGTCGGTAACTTGGCTGGAAGGTGCCAATCA CCCGGACATTGAACACCTGATCGATGCGTTTGACGGAAACGATGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1577:340..685+

>mRNA_P-littoralis_Contig1577.1.1 ID=mRNA_P-littoralis_Contig1577.1.1|Name=mRNA_P-littoralis_Contig1577.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig1577:340..685+ (Pylaiella littoralis U1_48)
AGAATCAGGGAGAAAGCGGCCGCAAATTATTTGCGGAGAAAGCGATACAA
AGTTGTCGAAACCAATGTATCAACGCCGGTGGGGGAGATCGACATCGTCG
CCGTGGATGATCGGACCGTTGTTTTCGTCGAAGTCAAAACTCGACGGTCT
AATAAAAAGGGGAGCCATGGGAAGCAGTTGATCTCGCCAAACGAAAAAAC
TGCTGCACCTTGCCGAAGCTTATTTGAAACGGGAAGATTTGAATGA
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