mRNA_P-littoralis_Contig1567.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE) HSP 1 Score: 118 bits (296), Expect = 5.360e-29 Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = 3
Query: 6 SWDTRLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLLHLCHVVRPGKFFIRRILNQLGL 242
SWDTR+EMLGW++DT +TISV K+ ++ MLAEWPV RR A++ +VRSLL KLLHLC VVRPGKFF+RRILNQLGL
Sbjct: 690 SWDTRMEMLGWVIDTVALTISVSQEKVAKMRAMLAEWPVERRVATVTEVRSLLGKLLHLCEVVRPGKFFVRRILNQLGL 768
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: V4B2J2_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4B2J2_LOTGI) HSP 1 Score: 64.3 bits (155), Expect = 2.310e-10 Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = 3
Query: 15 TRLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLLHLCHVVRPGKFFIRRILNQLGLGTLALNTPHSDGMHS 287
TR+ L +DT + T+ V P +++++ ++ W +TR++A++KD++SLL KL +C+ VRPG+ F+ R+LN L N + D HS
Sbjct: 72 TRMVFLCVSVDTQSTTMEVTPERVSEILALVESW-LTRKRATLKDLQSLLGKLHFICNCVRPGRIFVSRLLNWL---PTTFNDKNGDKKHS 158
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: A0A7M5UJ89_9CNID (Reverse transcriptase domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5UJ89_9CNID) HSP 1 Score: 54.7 bits (130), Expect = 1.420e-6 Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 3
Query: 21 LEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLLHLCHVVRPGKFFIRRILN 230
L LG +D+ T TI +P KL L D++ W + +RK +D+ SL+ L C V++PG+ F+RR+++
Sbjct: 311 LSYLGIEIDSVTFTIRLPANKLASLRDLVGSW-IDKRKCVKRDLLSLIGSLSFACKVIKPGRIFLRRLID 379
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: A0A8B6G915_MYTGA (Reverse transcriptase domain-containing protein n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6G915_MYTGA) HSP 1 Score: 54.3 bits (129), Expect = 1.940e-6 Identity = 26/74 (35.14%), Postives = 49/74 (66.22%), Query Frame = 3
Query: 15 TRLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLLHLCHVVRPGKFFIRRILNQL 236
TR+E LG +DT +T+ V ++ ++ ++ W + ++KAS+++++S+L KL + VRPG+ F+ R+LN L
Sbjct: 224 TRMEFLGITVDTVKLTLEVTSDRVLEISLLVQAW-LRKKKASLRELQSILGKLHFVSTCVRPGRLFVSRLLNWL 296
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: A0A7M5VD07_9CNID (Reverse transcriptase domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5VD07_9CNID) HSP 1 Score: 53.5 bits (127), Expect = 3.180e-6 Identity = 27/71 (38.03%), Postives = 45/71 (63.38%), Query Frame = 3
Query: 18 RLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLLHLCHVVRPGKFFIRRILN 230
+L LG +D+S I +P K ++L + L W + RRK + K++ S + KL +C VVRPG+ F+RR+++
Sbjct: 86 QLTYLGIEIDSSKQIIRIPNDKYSELMESLPFW-ILRRKCTKKELLSFIGKLSLVCKVVRPGRIFLRRLMD 155
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: K0SXC9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SXC9_THAOC) HSP 1 Score: 53.5 bits (127), Expect = 3.840e-6 Identity = 23/56 (41.07%), Postives = 39/56 (69.64%), Query Frame = 3
Query: 6 SWDTRLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKL 173
SW T ++LGW++DT +MTI +PP +L +L ++LA P T+++ S+K +L +L
Sbjct: 1134 SWSTVKQILGWVIDTVSMTIHLPPHRLERLGEILASIPATQKRTSVKKWHKVLGEL 1189
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: K0RTJ3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RTJ3_THAOC) HSP 1 Score: 53.1 bits (126), Expect = 5.200e-6 Identity = 23/56 (41.07%), Postives = 38/56 (67.86%), Query Frame = 3
Query: 6 SWDTRLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKL 173
SW T EMLGWI+DT +TIS+ P + +L ++LA P+T+++ S++ +L +L
Sbjct: 595 SWSTLKEMLGWIIDTVNLTISLAPRREERLAEILASIPITQKRTSVRKWHKVLGEL 650
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: UPI001C9213BB (uncharacterized protein LOC122378437 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C9213BB) HSP 1 Score: 52.8 bits (125), Expect = 6.690e-6 Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 3
Query: 15 TRLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLLHLCHVVRPGKFFIRRILN 230
TR+E+LG +LDT+ MTIS+P KL L +L E TR + + SL+ KL+H + G+ F RR+L+
Sbjct: 179 TRMELLGCVLDTADMTISLPLAKLRALIALLRETRSTRTIRQ-RQLLSLIGKLVHATKCIPAGRSFFRRLLD 249
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: A0A8B6CVB7_MYTGA (Reverse transcriptase domain-containing protein n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6CVB7_MYTGA) HSP 1 Score: 52.8 bits (125), Expect = 6.820e-6 Identity = 26/74 (35.14%), Postives = 48/74 (64.86%), Query Frame = 3
Query: 15 TRLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLLHLCHVVRPGKFFIRRILNQL 236
TR+E LG +DT +T+ V ++ ++ ++ W + ++KAS+++++S+L KL + VRPG+ F R+LN L
Sbjct: 342 TRMEFLGITVDTVKLTLEVTSDRVLEISLLVQAW-LRKKKASLRELQSILGKLHFVSTCVRPGRLFASRLLNWL 414
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: A0A8B6EMN8_MYTGA (Reverse transcriptase domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EMN8_MYTGA) HSP 1 Score: 51.2 bits (121), Expect = 2.430e-5 Identity = 24/71 (33.80%), Postives = 47/71 (66.20%), Query Frame = 3
Query: 15 TRLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLLHLCHVVRPGKFFIRRIL 227
TR+E LG +DT +T+ V ++ ++ ++ W + ++KAS+++++S+L KL + VRPG+ F+ R+L
Sbjct: 350 TRMEFLGITVDTVKLTLEVTSDRVLEISLLVQAW-LRKKKASLRELQSILGKLHFVSTCVRPGRLFVSRLL 419 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1567.1.1 >prot_P-littoralis_Contig1567.1.1 ID=prot_P-littoralis_Contig1567.1.1|Name=mRNA_P-littoralis_Contig1567.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp MLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLLback to top mRNA from alignment at P-littoralis_Contig1567:5342..5628+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1567.1.1 ID=mRNA_P-littoralis_Contig1567.1.1|Name=mRNA_P-littoralis_Contig1567.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=287bp|location=Sequence derived from alignment at P-littoralis_Contig1567:5342..5628+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1567:5342..5628+ >mRNA_P-littoralis_Contig1567.1.1 ID=mRNA_P-littoralis_Contig1567.1.1|Name=mRNA_P-littoralis_Contig1567.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1567:5342..5628+ (Pylaiella littoralis U1_48)back to top |