mRNA_P-littoralis_Contig156.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.16.1
Unique NamemRNA_P-littoralis_Contig156.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig156.16.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 6.580e-15
Identity = 36/94 (38.30%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    7 PHLSLLARVYAGVDTTSCQAERNFSVLKQVLSDMRAGTLPRKIEQMLLLRLNKHLIPGFAKVEQELAALKTRHDANAKAVVAVQQAREGSTVTL 288
            P+L+ +AR+Y G++ TSCQAERNFS L  ++  +R   LP K+E+M+ +RLN+HL+    +++  +   K      A++ +A Q+ R   TV L
Sbjct:  556 PYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTKVAQSSMAAQEERANQTVDL 649
[Close]
BLAST of mRNA_P-littoralis_Contig156.16.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 6.690e-15
Identity = 36/94 (38.30%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    7 PHLSLLARVYAGVDTTSCQAERNFSVLKQVLSDMRAGTLPRKIEQMLLLRLNKHLIPGFAKVEQELAALKTRHDANAKAVVAVQQAREGSTVTL 288
            P+L+ +AR+Y G++ TSCQAERNFS L  ++  +R   LP K+E+M+ +RLN+HL+    +++  +   K      A++ +A Q+ R   TV L
Sbjct:  751 PYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTKVAQSSMAAQEERANQTVDL 844
[Close]
BLAST of mRNA_P-littoralis_Contig156.16.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.930e-14
Identity = 33/95 (34.74%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:    7 PHLSLLARVYAGVDTTSCQAERNFSVLKQVLSDMRAGTLPRKIEQMLLLRLNKHLIPGFAKVEQELAALKTRHDANAKAVVAVQQAREGSTVTLN 291
            P+L+ +AR++ G++ +SCQAERNFS L  ++  +R   L RK+E+M+L+RLN+HL+    +++  ++  + +   +A+  VA Q+ R   ++ L+
Sbjct:  174 PYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVRELDAAVSLARAKAAKSAQKSVACQEERANKSIDLS 268
[Close]
BLAST of mRNA_P-littoralis_Contig156.16.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.910e-14
Identity = 33/95 (34.74%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:    7 PHLSLLARVYAGVDTTSCQAERNFSVLKQVLSDMRAGTLPRKIEQMLLLRLNKHLIPGFAKVEQELAALKTRHDANAKAVVAVQQAREGSTVTLN 291
            P+L+ +AR++ G++ +SCQAERNFS L  ++  +R   L RK+E+M+L+RLN+HL+    +++  ++  + +   +A+  VA Q+ R   ++ L+
Sbjct:  739 PYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVRELDAAVSLARAKAAKSAQKSVACQEERANKSIDLS 833
[Close]
BLAST of mRNA_P-littoralis_Contig156.16.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 4.800e-13
Identity = 35/94 (37.23%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:    7 PHLSLLARVYAGVDTTSCQAERNFSVLKQVLSDMRAGTLPRKIEQMLLLRLNKHLIPGFAKVEQELAALKTRHDANAKAVVAVQQAREGSTVTL 288
            P+L+ +AR+Y G++ TSCQAERNFS    ++  +R   LP K E+ + +RLN+HL+    +++  +A  K      A++ +A Q  R   TV L
Sbjct:  345 PYLAFIARLYLGIEATSCQAERNFSARSHLIGQLRCKILPSKFERTMFIRLNRHLVAEVRELDAAVAQAKATATKTAQSSMAAQGERANQTVDL 438
[Close]
BLAST of mRNA_P-littoralis_Contig156.16.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.450e-12
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:    7 PHLSLLARVYAGVDTTSCQAERNFSVLKQVLSDMRAGTLPRKIEQMLLLRLNKHLIPGFAKVEQELAALKTRHDANAKAVVAVQQAREGSTVTL 288
            PHL+L+AR++ G+++TSCQAERNFS L  ++  +R+  LP K+E+++ LRLN+  IP    +   + A K       + V  V+    G  V L
Sbjct:  412 PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKAAAARCQEKVAQVEAEAAGDAVVL 505
[Close]
BLAST of mRNA_P-littoralis_Contig156.16.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.630e-12
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:    7 PHLSLLARVYAGVDTTSCQAERNFSVLKQVLSDMRAGTLPRKIEQMLLLRLNKHLIPGFAKVEQELAALKTRHDANAKAVVAVQQAREGSTVTL 288
            PHL+L+AR++ G+++TSCQAERNFS L  ++  +R+  LP K+E+++ LRLN+  IP    +   + A K       + V  V+    G  V L
Sbjct:  740 PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKAAAARCQEKVAQVEAEAAGDAVVL 833
[Close]
BLAST of mRNA_P-littoralis_Contig156.16.1 vs. uniprot
Match: A0A6H5L902_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L902_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 7.100e-12
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:    1 RWPHLSLLARVYAGVDTTSCQAERNFSVLKQVLSDMRAGTLPRKIEQMLLLRLNKHLIPGFAKVEQELAALKTRHDANAKAVVAVQQAREGSTVTLN 291
            ++P LS+LARVY  +D+TSCQ+ER FS L  V +++R   +P ++E ++ LR N HLIP   K++  L  L            +VQ A  G  V ++
Sbjct:  202 QFPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMVMFLRSNPHLIPEINKLDNGLGKLLAAQAVGKAKAASVQAANAGEQVVVD 298
[Close]
BLAST of mRNA_P-littoralis_Contig156.16.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.140e-11
Identity = 33/94 (35.11%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:    7 PHLSLLARVYAGVDTTSCQAERNFSVLKQVLSDMRAGTLPRKIEQMLLLRLNKHLIPGFAKVEQELAALKTRHDANAKAVVAVQQAREGSTVTL 288
            P+L+ +AR++ G++ TSCQAERNFS L  ++  +R   L RK+E+M+L+RLN+HL+     ++  +A  +     +A+     Q  R    + L
Sbjct:  434 PYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLLAEVRALDAAVAQARAMAAKSARESGIAQADRSNKEIDL 527
[Close]
BLAST of mRNA_P-littoralis_Contig156.16.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 7.510e-11
Identity = 31/95 (32.63%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:    7 PHLSLLARVYAGVDTTSCQAERNFSVLKQVLSDMRAGTLPRKIEQMLLLRLNKHLIPGFAKVEQELAALKTRHDANAKAVVAVQQAREGSTVTLN 291
            P+L+ +AR++ G++ TSCQAERNFS L  ++ D+    L  ++E+M+L+RLNKHL+      +  +A  +     +A+     Q+ R  + + ++
Sbjct:  552 PYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLLAEVRAYDAAVAWARAMAANSAEKSAVAQEERANTAIDVS 646
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JTB8_9PHAE6.580e-1538.30Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE6.690e-1538.30Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KJT6_9PHAE1.930e-1434.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE5.910e-1434.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE4.800e-1337.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE4.450e-1238.30Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE4.630e-1238.30Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L902_9PHAE7.100e-1238.14Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE1.140e-1135.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE7.510e-1132.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:95337..95630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog6412.HelroP79655
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size296
Max annot lvl33208|Metazoa
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.41e-06
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,39SKR@33154|Opisthokonta,3BBS9@33208|Metazoa,3CUF3@33213|Bilateria
DescriptionZinc finger BED domain-containing protein
Cds size294
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789744.4157498-CDS-P-littoralis_Contig156:95336..956301680789744.4157498-CDS-P-littoralis_Contig156:95336..95630Pylaiella littoralis U1_48CDSP-littoralis_Contig156 95337..95630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.16.1prot_P-littoralis_Contig156.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 95337..95630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.16.1

>prot_P-littoralis_Contig156.16.1 ID=prot_P-littoralis_Contig156.16.1|Name=mRNA_P-littoralis_Contig156.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
RWPHLSLLARVYAGVDTTSCQAERNFSVLKQVLSDMRAGTLPRKIEQMLL
LRLNKHLIPGFAKVEQELAALKTRHDANAKAVVAVQQAREGSTVTLN*
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mRNA from alignment at P-littoralis_Contig156:95337..95630-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.16.1 ID=mRNA_P-littoralis_Contig156.16.1|Name=mRNA_P-littoralis_Contig156.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig156:95337..95630- (Pylaiella littoralis U1_48)
CGCTGGCCGCATCTGAGTTTGCTAGCACGCGTGTACGCAGGCGTAGACAC
CACCAGTTGTCAAGCGGAGAGGAACTTTTCCGTCCTCAAGCAGGTCCTAA
GTGACATGCGTGCCGGTACCCTGCCTCGTAAGATCGAGCAGATGCTCTTG
CTTAGGCTGAACAAGCACCTCATCCCAGGCTTTGCGAAAGTAGAGCAAGA
GCTGGCCGCATTGAAGACAAGGCACGACGCAAACGCAAAGGCCGTGGTTG
CCGTCCAGCAAGCCAGGGAAGGGAGTACTGTCACCTTGAACTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:95337..95630-

>mRNA_P-littoralis_Contig156.16.1 ID=mRNA_P-littoralis_Contig156.16.1|Name=mRNA_P-littoralis_Contig156.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig156:95337..95630- (Pylaiella littoralis U1_48)
CGCTGGCCGCATCTGAGTTTGCTAGCACGCGTGTACGCAGGCGTAGACAC
CACCAGTTGTCAAGCGGAGAGGAACTTTTCCGTCCTCAAGCAGGTCCTAA
GTGACATGCGTGCCGGTACCCTGCCTCGTAAGATCGAGCAGATGCTCTTG
CTTAGGCTGAACAAGCACCTCATCCCAGGCTTTGCGAAAGTAGAGCAAGA
GCTGGCCGCATTGAAGACAAGGCACGACGCAAACGCAAAGGCCGTGGTTG
CCGTCCAGCAAGCCAGGGAAGGGAGTACTGTCACCTTGAACTAG
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