mRNA_P-littoralis_Contig156.119.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.119.1
Unique NamemRNA_P-littoralis_Contig156.119.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:358965..360798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size929
Hectar predicted targeting categoryother localisation
Exons6
Cds size828
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.119.1prot_P-littoralis_Contig156.119.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 359017..360749 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789742.9531014-UTR-P-littoralis_Contig156:358964..3590161680789742.9531014-UTR-P-littoralis_Contig156:358964..359016Pylaiella littoralis U1_48UTRP-littoralis_Contig156 358965..359016 +
1680789743.0189717-UTR-P-littoralis_Contig156:360749..3607981680789743.0189717-UTR-P-littoralis_Contig156:360749..360798Pylaiella littoralis U1_48UTRP-littoralis_Contig156 360750..360798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789742.9613044-CDS-P-littoralis_Contig156:359016..3590671680789742.9613044-CDS-P-littoralis_Contig156:359016..359067Pylaiella littoralis U1_48CDSP-littoralis_Contig156 359017..359067 +
1680789742.9707248-CDS-P-littoralis_Contig156:359357..3598321680789742.9707248-CDS-P-littoralis_Contig156:359357..359832Pylaiella littoralis U1_48CDSP-littoralis_Contig156 359358..359832 +
1680789742.9792476-CDS-P-littoralis_Contig156:360020..3600951680789742.9792476-CDS-P-littoralis_Contig156:360020..360095Pylaiella littoralis U1_48CDSP-littoralis_Contig156 360021..360095 +
1680789742.9891405-CDS-P-littoralis_Contig156:360187..3602731680789742.9891405-CDS-P-littoralis_Contig156:360187..360273Pylaiella littoralis U1_48CDSP-littoralis_Contig156 360188..360273 +
1680789742.997922-CDS-P-littoralis_Contig156:360442..3605531680789742.997922-CDS-P-littoralis_Contig156:360442..360553Pylaiella littoralis U1_48CDSP-littoralis_Contig156 360443..360553 +
1680789743.0062675-CDS-P-littoralis_Contig156:360719..3607491680789743.0062675-CDS-P-littoralis_Contig156:360719..360749Pylaiella littoralis U1_48CDSP-littoralis_Contig156 360720..360749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.119.1

>prot_P-littoralis_Contig156.119.1 ID=prot_P-littoralis_Contig156.119.1|Name=mRNA_P-littoralis_Contig156.119.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=276bp
MADGGSSSAVEEGCYAEIKNLAQTASFVRGLVDFASRGDNVAQFGLLLTN
ATDACKALQAATQELHDEKKDELDLAKLIEEEKQLKMKAEAVKKTRADNA
KVAKAAREEESRAVEAARRATQAKQEAEKAASAAEKKERESAESSARQQE
AVRVAEVKRKKAEEEAKKRKRRRSEGSGGGSGAALGSPGSPGARNSPDVA
GGSGGSGTPASASGCGGEGQVKGMTPKSKRARGVDTPHTGGGGGGSGSES
GSAGDDSNKSHNVRGPDTSDDGKDE*
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mRNA from alignment at P-littoralis_Contig156:358965..360798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.119.1 ID=mRNA_P-littoralis_Contig156.119.1|Name=mRNA_P-littoralis_Contig156.119.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1834bp|location=Sequence derived from alignment at P-littoralis_Contig156:358965..360798+ (Pylaiella littoralis U1_48)
GGCAGGGTGAGAGAGAGGGAGGGAGAGAGAGAGAGGAGATACGCCGGCGG
ACATGGCGGACGGCGGTTCTTCTTCCGCTGTGGAGGAGGGTTGCTACGCA
GAGGTGAGAGAGTCATGTTGGTACGGGCCGGAGCACCACAAACCTTTCTT
TTGCAGAAAACCAAGCAAATTGGATCCAGTTGTTTCCCCTTCCCCTCTCC
TCTGTCGCTTGCGCAAAACGCTTCCTTTACCCATCCCTATCTACCCGATG
ATGCAGAGCGTTGGAAAGTCTGGTGGAACACAATGGTCCCATTTCCAACT
TTCCCTTCGCCTTCTCCTGTCGCGTGCGCAAAAACGTCTTGTCTACCGTG
TCTGTCGTCCCAAAACTTGCATATTTTTCCTTTGTTGTGGTAGATAAAGA
ACCTGGCCCAGACTGCCAGTTTTGTCAGGGGATTGGTAGACTTTGCGTCA
CGCGGTGATAACGTTGCACAGTTCGGATTGCTGTTGACAAATGCAACGGA
CGCCTGCAAAGCACTTCAAGCTGCGACACAGGAGCTTCACGATGAGAAAA
AAGATGAGCTAGATTTAGCCAAACTCATAGAGGAAGAGAAACAGTTAAAG
ATGAAAGCTGAAGCTGTCAAGAAAACACGAGCAGACAACGCAAAGGTAGC
GAAAGCAGCCCGAGAAGAGGAAAGTAGAGCTGTTGAAGCAGCACGGAGGG
CCACGCAGGCCAAACAGGAAGCAGAAAAGGCAGCGTCGGCAGCCGAGAAG
AAAGAACGGGAGAGCGCCGAGAGCTCCGCCAGACAACAAGAAGCAGTGAG
GGTTGCGGAAGTCAAGCGGAAGAAGGCAGAGGAGGAGGCGAAGAAGCGGA
AGCGCAGGAGATCAGAAGGTAAAGTCACCACCCACCACCCCTTTTCCGTT
TGTGCGCTCATGTGCGTGTAAGCTCGCTTGTGTTCCTGGTTCAACAGTGT
CTCGCTCGTCTTTTTTTACTACTGCCTCTTCTCTCCACGTCTACAACCGT
TTCTGCTGTCTCGCAACAATGCCTTTTTCTACCCTTGTCACCTCTTTTTT
GCTCAGGCTCTGGGGGCGGCTCGGGTGCTGCTCTCGGCTCTCCCGGCTCT
CCCGGCGCCAGAAACAGCCCGGACGTGGCTGGTGAGAGATGGGGCTCGTT
TGCGAATATAGTTGTAATAAAGACACACATCGTATATTCATATAGAAGCT
GATAGCTCTCATCTGTTCGGCAGGTGGCTCCGGTGGTTCCGGCACGCCAG
CATCAGCCAGTGGATGTGGCGGAGAAGGGCAGGTCAAAGGCATGACGCCC
AAAAGCAAGGTGACATGTGTAAAAAGCGCGTGTGTAGCCTAATTATTGCT
TGGCGGATCATTCATCACAGTTTCCAACAAACGCACAACAGCACGGTGGG
AAAGTATGTATCGAATGTCGAATGCACTGGTGTCCGAGCGCGCTTTCTTT
TGCCTGCTGCACATTTGTCCCCTACCAGCGTGCTCGCGGCGTGGACACGC
CACACACTGGAGGTGGCGGAGGTGGCTCTGGTAGTGAATCCGGCTCCGCT
GGTGATGACAGCAACAAGAGTCACAACGTGCGTGGACCGGTGCGTATGTA
TTCAGTTTGAGATGATGGGTAAGGTTCTCGCGATGGGGCCGGGTCAGCCT
TTAGTGGCTTTTCTCCTCCCGTGTTTGCCAAAGTACAACCGTTGACGAGC
TCGCTCCCTGGCTTTGCTTTATTCAACCTCTTTGAAATACCCCTGGCCGA
ACCAGGACACGAGCGATGATGGGAAGGACGAGTAAAAGCAGGAGCAACAG
GAGCAGGGAGGAGATGTGGAGGAGGAAGACGATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:358965..360798+

>mRNA_P-littoralis_Contig156.119.1 ID=mRNA_P-littoralis_Contig156.119.1|Name=mRNA_P-littoralis_Contig156.119.1|organism=Pylaiella littoralis U1_48|type=CDS|length=828bp|location=Sequence derived from alignment at P-littoralis_Contig156:358965..360798+ (Pylaiella littoralis U1_48)
ATGGCGGACGGCGGTTCTTCTTCCGCTGTGGAGGAGGGTTGCTACGCAGA
GATAAAGAACCTGGCCCAGACTGCCAGTTTTGTCAGGGGATTGGTAGACT
TTGCGTCACGCGGTGATAACGTTGCACAGTTCGGATTGCTGTTGACAAAT
GCAACGGACGCCTGCAAAGCACTTCAAGCTGCGACACAGGAGCTTCACGA
TGAGAAAAAAGATGAGCTAGATTTAGCCAAACTCATAGAGGAAGAGAAAC
AGTTAAAGATGAAAGCTGAAGCTGTCAAGAAAACACGAGCAGACAACGCA
AAGGTAGCGAAAGCAGCCCGAGAAGAGGAAAGTAGAGCTGTTGAAGCAGC
ACGGAGGGCCACGCAGGCCAAACAGGAAGCAGAAAAGGCAGCGTCGGCAG
CCGAGAAGAAAGAACGGGAGAGCGCCGAGAGCTCCGCCAGACAACAAGAA
GCAGTGAGGGTTGCGGAAGTCAAGCGGAAGAAGGCAGAGGAGGAGGCGAA
GAAGCGGAAGCGCAGGAGATCAGAAGGCTCTGGGGGCGGCTCGGGTGCTG
CTCTCGGCTCTCCCGGCTCTCCCGGCGCCAGAAACAGCCCGGACGTGGCT
GGTGGCTCCGGTGGTTCCGGCACGCCAGCATCAGCCAGTGGATGTGGCGG
AGAAGGGCAGGTCAAAGGCATGACGCCCAAAAGCAAGCGTGCTCGCGGCG
TGGACACGCCACACACTGGAGGTGGCGGAGGTGGCTCTGGTAGTGAATCC
GGCTCCGCTGGTGATGACAGCAACAAGAGTCACAACGTGCGTGGACCGGA
CACGAGCGATGATGGGAAGGACGAGTAA
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