mRNA_P-littoralis_Contig156.111.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.111.1
Unique NamemRNA_P-littoralis_Contig156.111.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:338951..339475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size450
Hectar predicted targeting categorysignal peptide
Exons2
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789746.464313-CDS-P-littoralis_Contig156:338950..3391571680789746.464313-CDS-P-littoralis_Contig156:338950..339157Pylaiella littoralis U1_48CDSP-littoralis_Contig156 338951..339157 -
1680789746.479997-CDS-P-littoralis_Contig156:339232..3394751680789746.479997-CDS-P-littoralis_Contig156:339232..339475Pylaiella littoralis U1_48CDSP-littoralis_Contig156 339233..339475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.111.1prot_P-littoralis_Contig156.111.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 338951..339475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.111.1

>prot_P-littoralis_Contig156.111.1 ID=prot_P-littoralis_Contig156.111.1|Name=mRNA_P-littoralis_Contig156.111.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=150bp
MWVTWVILNLLLAVFGVSDEVIPAVELMADHWELGVHVGLETAPHPAALG
RQVQLCIARERVKLALSCTTAGVTKRRAYTPHCLGKTKTPSVQQMKSAVV
KRATEHTVGKTHHVGQSTTVVLSPEQLTRGRELRMPELIGDEPAPDRRTV
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mRNA from alignment at P-littoralis_Contig156:338951..339475-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.111.1 ID=mRNA_P-littoralis_Contig156.111.1|Name=mRNA_P-littoralis_Contig156.111.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig156:338951..339475- (Pylaiella littoralis U1_48)
ATGTGGGTCACGTGGGTCATCTTGAACCTACTGCTGGCGGTATTCGGCGT
GAGTGACGAGGTAATTCCTGCTGTGGAGCTTATGGCCGACCATTGGGAGC
TTGGCGTCCATGTCGGGCTGGAAACAGCTCCGCATCCTGCTGCCCTGGGA
AGACAGGTACAGCTGTGCATCGCTCGAGAACGTGTAAAGTTGGCACTGTC
ATGCACCACAGCAGGGGTTACAAAACGCAGAGCGTACACTCCCGCAAAGG
GGGCTAGCGTGCATAGGGTTCCTGGAGATGGCGGGTGCGGCTGGACGGCG
ATGCATGGAGCCCTACAGCACTGCCTGGGTAAGACGAAGACACCAAGCGT
ACAGCAGATGAAGAGTGCAGTAGTCAAGAGAGCGACTGAGCACACTGTTG
GTAAAACACATCATGTGGGGCAGTCGACGACAGTAGTACTCTCGCCAGAG
CAGCTTACGAGAGGCCGCGAACTCCGCATGCCGGAACTGATAGGTGACGA
GCCCGCCCCAGACAGAAGAACGGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:338951..339475-

>mRNA_P-littoralis_Contig156.111.1 ID=mRNA_P-littoralis_Contig156.111.1|Name=mRNA_P-littoralis_Contig156.111.1|organism=Pylaiella littoralis U1_48|type=CDS|length=450bp|location=Sequence derived from alignment at P-littoralis_Contig156:338951..339475- (Pylaiella littoralis U1_48)
ATGTGGGTCACGTGGGTCATCTTGAACCTACTGCTGGCGGTATTCGGCGT
GAGTGACGAGGTAATTCCTGCTGTGGAGCTTATGGCCGACCATTGGGAGC
TTGGCGTCCATGTCGGGCTGGAAACAGCTCCGCATCCTGCTGCCCTGGGA
AGACAGGTACAGCTGTGCATCGCTCGAGAACGTGTAAAGTTGGCACTGTC
ATGCACCACAGCAGGGGTTACAAAACGCAGAGCGTACACTCCCCACTGCC
TGGGTAAGACGAAGACACCAAGCGTACAGCAGATGAAGAGTGCAGTAGTC
AAGAGAGCGACTGAGCACACTGTTGGTAAAACACATCATGTGGGGCAGTC
GACGACAGTAGTACTCTCGCCAGAGCAGCTTACGAGAGGCCGCGAACTCC
GCATGCCGGAACTGATAGGTGACGAGCCCGCCCCAGACAGAAGAACGGTC
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