mRNA_P-littoralis_Contig1559.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1559.1.1
Unique NamemRNA_P-littoralis_Contig1559.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1559.1.1 vs. uniprot
Match: A0A6H5KDT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDT3_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 8.560e-13
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = -2 
Query:    4 RVHTVFGPSSPT--APGTSDTSPLASKPPPADLLNRLDDDQRRSFERLWARLPVHLRDITFDLHDPS*SSKAIDDLADA 234
            RV+ V GP S T  +P  +   PL  KPPP +LL+R  + QR SF RLWARLP H+ DI FDLH+P  + +AID LADA
Sbjct:   88 RVNAV-GPKSGTHRSPDPASAPPLP-KPPPQELLDRFSEAQRSSFMRLWARLPAHMHDIAFDLHNPGWTPEAIDRLADA 164
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BLAST of mRNA_P-littoralis_Contig1559.1.1 vs. uniprot
Match: A0A6H5L243_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L243_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.570e-11
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = -2 
Query:    4 TSPLASKPPPADLLNRLDDDQRRSFERLWARLPVHLRDITFDLHDPS*SSKAIDDLADA 180
            ++P   KPPP +LL+R  + Q  SF RLWARLP H+ DI FDLH+P  + +AID LADA
Sbjct:  406 SAPPLPKPPPQELLDRFSEAQCSSFMRLWARLPAHMHDIAFDLHNPGWTPEAIDRLADA 464
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BLAST of mRNA_P-littoralis_Contig1559.1.1 vs. uniprot
Match: A0A6H5JGS1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 4.960e-11
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = -2 
Query:    4 TSPLASKPPPADLLNRLDDDQRRSFERLWARLPVHLRDITFDLHDPS*SSKAIDDLADA 180
            ++P   KP P +LL+R  + QR SF RLWARLP H+ DI FDLH+P  + +AID LADA
Sbjct:  601 SAPPPPKPLPQELLDRFSEAQRSSFMRLWARLPAHMHDIAFDLHNPGWTPEAIDRLADA 659
[Close]
BLAST of mRNA_P-littoralis_Contig1559.1.1 vs. uniprot
Match: A0A6H5KD16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD16_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.280e-9
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = -2 
Query:    4 DLLNRLDDDQRRSFERLWARLPVHLRDITFDLHDPS*SSKAIDDLADA 147
            +LL+R  + QR SF RLWARLP H+ DI FDLH+P  + +AID LADA
Sbjct:   23 ELLDRFSEAQRSSFMRLWARLPAHMHDIAFDLHNPGWTPEAIDRLADA 70
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BLAST of mRNA_P-littoralis_Contig1559.1.1 vs. uniprot
Match: A0A6H5K4L7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4L7_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.400e-9
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = -2 
Query:    4 DLLNRLDDDQRRSFERLWARLPVHLRDITFDLHDPS*SSKAIDDLADA 147
            DLL+R  + QR SF RLWARLP H+ DI FDLH+P  + +AID LADA
Sbjct:  382 DLLDRFSEAQRSSFMRLWARLPAHMHDIAFDLHNPGWTPEAIDRLADA 429
[Close]
BLAST of mRNA_P-littoralis_Contig1559.1.1 vs. uniprot
Match: A0A6H5K1F8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.770e-9
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = -2 
Query:    4 DLLNRLDDDQRRSFERLWARLPVHLRDITFDLHDPS*SSKAIDDLADA 147
            +LL+R  + QR SF RLWARLP H+ DI FDLH+P  + +AID LADA
Sbjct:  428 ELLDRFSEAQRSSFMRLWARLPAHMHDIAFDLHNPGWTPEAIDRLADA 475
[Close]
BLAST of mRNA_P-littoralis_Contig1559.1.1 vs. uniprot
Match: A0A6H5LBU1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBU1_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.890e-9
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = -2 
Query:    4 DLLNRLDDDQRRSFERLWARLPVHLRDITFDLHDPS*SSKAIDDLADA 147
            +LL+R  + QR SF RLWARLP H+ DI FDLH+P  + +AID LADA
Sbjct:  110 ELLDRFSEAQRSSFMRLWARLPAHMHDIAFDLHNPGWTPEAIDRLADA 157
[Close]
BLAST of mRNA_P-littoralis_Contig1559.1.1 vs. uniprot
Match: A0A6H5KDL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL4_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.910e-9
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = -2 
Query:    4 DLLNRLDDDQRRSFERLWARLPVHLRDITFDLHDPS*SSKAIDDLADA 147
            +LL+R  + QR SF RLWARLP H+ DI FDLH+P  + +AID LADA
Sbjct:  110 ELLDRFSEAQRSSFMRLWARLPAHMHDIAFDLHNPGWTPEAIDRLADA 157
[Close]
BLAST of mRNA_P-littoralis_Contig1559.1.1 vs. uniprot
Match: A0A6H5L559_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L559_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.940e-9
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = -2 
Query:    4 RVHTVFGPSSPTAPGTSDTSPLASKPPPADL-----LNRLDDDQRRSFERLWARLPVHLRDITFDLHDPS*SSKAIDDLADA 234
            RV+ V GP S    GT  +   AS PPP  L     L+R  + QR SF RLWARLP H+ +I FDLH+P  + +AID LA+A
Sbjct:  531 RVNAV-GPKS----GTHRSPDPASAPPPPKLPPQERLDRFSEAQRSSFMRLWARLPAHMHNIAFDLHNPGWTPEAIDRLAEA 607
[Close]
BLAST of mRNA_P-littoralis_Contig1559.1.1 vs. uniprot
Match: A0A6H5KMH8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMH8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.030e-9
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = -2 
Query:    4 DLLNRLDDDQRRSFERLWARLPVHLRDITFDLHDPS*SSKAIDDLADA 147
            +LL+R  + QR SF RLWARLP H+ DI FDLH+P  + +AID LADA
Sbjct:  577 ELLDRFSEAQRSSFMRLWARLPAHMHDIAFDLHNPGWTPEAIDRLADA 624
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1559.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDT3_9PHAE8.560e-1354.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L243_9PHAE2.570e-1155.93Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JGS1_9PHAE4.960e-1155.93Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KD16_9PHAE1.280e-960.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4L7_9PHAE1.400e-962.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1F8_9PHAE4.770e-960.42Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LBU1_9PHAE4.890e-960.42Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDL4_9PHAE4.910e-960.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L559_9PHAE4.940e-948.78Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMH8_9PHAE5.030e-960.42Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1559contigP-littoralis_Contig1559:4168..4609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size442
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789742.5434735-CDS-P-littoralis_Contig1559:4167..45451680789742.5434735-CDS-P-littoralis_Contig1559:4167..4545Pylaiella littoralis U1_48CDSP-littoralis_Contig1559 4168..4545 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789742.555318-UTR-P-littoralis_Contig1559:4545..46091680789742.555318-UTR-P-littoralis_Contig1559:4545..4609Pylaiella littoralis U1_48UTRP-littoralis_Contig1559 4546..4609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1559.1.1prot_P-littoralis_Contig1559.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1559 4168..4545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1559.1.1

>prot_P-littoralis_Contig1559.1.1 ID=prot_P-littoralis_Contig1559.1.1|Name=mRNA_P-littoralis_Contig1559.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=126bp
MSRRCTGSRAHNRSKLRRWSSSRRFSKSAGGGLDASGEVSEVPGAVGEDG
PNTVCTRPTDGDDDEEVDDDEGAEGADEGPDVVAEDGEEDARAGDADGDG
VDDAREAGGDTASRGTRNKGAAATPN
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mRNA from alignment at P-littoralis_Contig1559:4168..4609-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1559.1.1 ID=mRNA_P-littoralis_Contig1559.1.1|Name=mRNA_P-littoralis_Contig1559.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=442bp|location=Sequence derived from alignment at P-littoralis_Contig1559:4168..4609- (Pylaiella littoralis U1_48)
CAGGGCATCAGCGAGGTCATCGATGGCCTTCGAAGACTAGCTAGGGTCAT
GAAGGTCGAAGGTGATGTCGCGGAGATGCACAGGCAGCCGTGCCCACAAT
CGTTCGAAACTACGACGTTGGTCGTCGTCGAGGCGGTTCAGCAAGTCTGC
CGGTGGAGGCTTGGATGCGAGCGGGGAGGTGTCGGAGGTGCCTGGTGCGG
TCGGAGAGGACGGTCCGAACACGGTGTGCACGCGGCCTACAGACGGAGAC
GACGACGAAGAGGTAGACGACGACGAAGGGGCAGAAGGTGCAGATGAAGG
CCCTGACGTAGTGGCAGAAGATGGAGAAGAGGATGCACGAGCCGGAGACG
CAGATGGGGACGGAGTGGACGACGCCCGCGAGGCTGGGGGCGACACGGCA
TCAAGAGGTACCCGCAACAAAGGTGCCGCGGCTACGCCCAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1559:4168..4609-

>mRNA_P-littoralis_Contig1559.1.1 ID=mRNA_P-littoralis_Contig1559.1.1|Name=mRNA_P-littoralis_Contig1559.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig1559:4168..4609- (Pylaiella littoralis U1_48)
ATGTCGCGGAGATGCACAGGCAGCCGTGCCCACAATCGTTCGAAACTACG
ACGTTGGTCGTCGTCGAGGCGGTTCAGCAAGTCTGCCGGTGGAGGCTTGG
ATGCGAGCGGGGAGGTGTCGGAGGTGCCTGGTGCGGTCGGAGAGGACGGT
CCGAACACGGTGTGCACGCGGCCTACAGACGGAGACGACGACGAAGAGGT
AGACGACGACGAAGGGGCAGAAGGTGCAGATGAAGGCCCTGACGTAGTGG
CAGAAGATGGAGAAGAGGATGCACGAGCCGGAGACGCAGATGGGGACGGA
GTGGACGACGCCCGCGAGGCTGGGGGCGACACGGCATCAAGAGGTACCCG
CAACAAAGGTGCCGCGGCTACGCCCAAC
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