mRNA_P-littoralis_Contig1557.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1557.1.1 vs. uniprot
Match: A0A6H5KIS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS6_9PHAE) HSP 1 Score: 336 bits (862), Expect = 1.050e-108 Identity = 167/212 (78.77%), Postives = 186/212 (87.74%), Query Frame = 3
Query: 570 VLVRQEEG--RHCTSVHRLARQLVSDSGGLGDMQPIFDGLKGKRYFTQLDLASGFHQIEIAESDRFNTAFRDADGMLWEFTRAGFGLTVLPAAFSRRVKSALGHIDGVFSWLDGILIASSTWEEHLATITLVFNRLLAAGLSVNFAKCIFGAASQDFLGMVMDSTGICPAPSKLRAIADMARPTNVEELRTFLGMTGYLRQFVPLYSITAAP 1199
+ V++++G R C L + LVSDSGGLGDMQ IFDGLKGK+YFTQLDLASGFHQ+EIAE DR+ TAFRDADGMLWEFTRAGFGLTVLPAAF+RRVKSALGH+ GVFSWLD ILIAS +WEEHLAT+TLV NRLLAAGLSVNFAKC FGAASQ+FLGM++DSTG+ PAPSKL AIA M RP VEELRTFLG+TGYLRQFVP YS+TAAP
Sbjct: 57 LCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLAGVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCPFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAP 268
BLAST of mRNA_P-littoralis_Contig1557.1.1 vs. uniprot
Match: A0A6H5JQV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV6_9PHAE) HSP 1 Score: 339 bits (869), Expect = 3.720e-107 Identity = 168/212 (79.25%), Postives = 187/212 (88.21%), Query Frame = 3
Query: 570 VLVRQEEG--RHCTSVHRLARQLVSDSGGLGDMQPIFDGLKGKRYFTQLDLASGFHQIEIAESDRFNTAFRDADGMLWEFTRAGFGLTVLPAAFSRRVKSALGHIDGVFSWLDGILIASSTWEEHLATITLVFNRLLAAGLSVNFAKCIFGAASQDFLGMVMDSTGICPAPSKLRAIADMARPTNVEELRTFLGMTGYLRQFVPLYSITAAP 1199
+ V++++G R C L + LVSDSGGLGDMQ IFDGLKGK+YFTQLDLASGFHQ+EIAE DR+ TAFRDADGMLWEFTRAGFGLTVLPAAF+RRVKSALGH+ GVFSWLD ILIAS +WEEHLAT+TLV NRLLAAGLSVNFAKCIFGAASQ+FLGM++DSTG+ PAPSKL AIA M RP VEELRTFLG+TGYLRQFVP YS+TAAP
Sbjct: 197 LCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLAGVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCIFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAP 408
BLAST of mRNA_P-littoralis_Contig1557.1.1 vs. uniprot
Match: A0A6H5K9Z4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z4_9PHAE) HSP 1 Score: 330 bits (847), Expect = 1.900e-105 Identity = 164/202 (81.19%), Postives = 177/202 (87.62%), Query Frame = 3
Query: 594 RHCTSVHRLARQLVSDSGGLGDMQPIFDGLKGKRYFTQLDLASGFHQIEIAESDRFNTAFRDADGMLWEFTRAGFGLTVLPAAFSRRVKSALGHIDGVFSWLDGILIASSTWEEHLATITLVFNRLLAAGLSVNFAKCIFGAASQDFLGMVMDSTGICPAPSKLRAIADMARPTNVEELRTFLGMTGYLRQFVPLYSITAAP 1199
R C L LVSDSG LGDMQ IFD LKGK+YFTQLDLASGFHQ+EIAE DR+ TAFRDADGMLWEFTRAGFGLTVLPAAF+RRVKSALGH+ GVFSWLD ILIAS +WEEHLAT+TLV NRLLAAGLSVNFAKCIFGAASQ+FLGM++DSTG+ PAPSKL AIA M RP VEELRTFLG+TGYLRQFVP YS+TAAP
Sbjct: 23 RLCIDWRELNTLLVSDSGDLGDMQTIFDTLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLAGVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCIFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAP 224
BLAST of mRNA_P-littoralis_Contig1557.1.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE) HSP 1 Score: 339 bits (869), Expect = 4.660e-104 Identity = 168/212 (79.25%), Postives = 187/212 (88.21%), Query Frame = 3
Query: 570 VLVRQEEG--RHCTSVHRLARQLVSDSGGLGDMQPIFDGLKGKRYFTQLDLASGFHQIEIAESDRFNTAFRDADGMLWEFTRAGFGLTVLPAAFSRRVKSALGHIDGVFSWLDGILIASSTWEEHLATITLVFNRLLAAGLSVNFAKCIFGAASQDFLGMVMDSTGICPAPSKLRAIADMARPTNVEELRTFLGMTGYLRQFVPLYSITAAP 1199
+ V++++G R C L + LVSDSGGLGDMQ IFDGLKGK+YFTQLDLASGFHQ+EIAE DR+ TAFRDADGMLWEFTRAGFGLTVLPAAF+RRVKSALGH+ GVFSWLD ILIAS +WEEHLAT+TLV NRLLAAGLSVNFAKCIFGAASQ+FLGM++DSTG+ PAPSKL AIA M RP VEELRTFLG+TGYLRQFVP YS+TAAP
Sbjct: 199 LCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLAGVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCIFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAP 410
BLAST of mRNA_P-littoralis_Contig1557.1.1 vs. uniprot
Match: A0A6H5KAQ6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ6_9PHAE) HSP 1 Score: 318 bits (814), Expect = 1.500e-101 Identity = 156/222 (70.27%), Postives = 184/222 (82.88%), Query Frame = 3
Query: 540 PSLHEPVGGAVLVRQEEG--RHCTSVHRLARQLVSDSGGLGDMQPIFDGLKGKRYFTQLDLASGFHQIEIAESDRFNTAFRDADGMLWEFTRAGFGLTVLPAAFSRRVKSALGHIDGVFSWLDGILIASSTWEEHLATITLVFNRLLAAGLSVNFAKCIFGAASQDFLGMVMDSTGICPAPSKLRAIADMARPTNVEELRTFLGMTGYLRQFVPLYSITAAP 1199
PS+ + V++++G R C L + LV+DSGGLGDMQ IFDGLKGKRYFTQ+DLASGFHQIEIAE DR+ TAFRDADGML+EFTRA FGLTVLP+AF+RRVKSALG +DGVFSWLD IL+A+ TWEEHLA + LV RL AAGLSVNF KCIFGA+SQ+FLG+++D+TG+ PAPSKL AIA+M RP VE+LRTFLG+TGYLRQFVP YS+ AAP
Sbjct: 207 PSMSPWAAQCLCVKKKDGTMRLCIDWRVLNKLLVADSGGLGDMQTIFDGLKGKRYFTQIDLASGFHQIEIAEKDRYKTAFRDADGMLYEFTRAAFGLTVLPSAFTRRVKSALGIVDGVFSWLDDILVANETWEEHLAALVLVLTRLRAAGLSVNFPKCIFGASSQEFLGIIIDATGMHPAPSKLEAIANMPRPQTVEDLRTFLGLTGYLRQFVPQYSLVAAP 428
BLAST of mRNA_P-littoralis_Contig1557.1.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE) HSP 1 Score: 339 bits (869), Expect = 4.460e-101 Identity = 168/212 (79.25%), Postives = 187/212 (88.21%), Query Frame = 3
Query: 570 VLVRQEEG--RHCTSVHRLARQLVSDSGGLGDMQPIFDGLKGKRYFTQLDLASGFHQIEIAESDRFNTAFRDADGMLWEFTRAGFGLTVLPAAFSRRVKSALGHIDGVFSWLDGILIASSTWEEHLATITLVFNRLLAAGLSVNFAKCIFGAASQDFLGMVMDSTGICPAPSKLRAIADMARPTNVEELRTFLGMTGYLRQFVPLYSITAAP 1199
+ V++++G R C L + LVSDSGGLGDMQ IFDGLKGK+YFTQLDLASGFHQ+EIAE DR+ TAFRDADGMLWEFTRAGFGLTVLPAAF+RRVKSALGH+ GVFSWLD ILIAS +WEEHLAT+TLV NRLLAAGLSVNFAKCIFGAASQ+FLGM++DSTG+ PAPSKL AIA M RP VEELRTFLG+TGYLRQFVP YS+TAAP
Sbjct: 721 LCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLAGVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCIFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAP 932
BLAST of mRNA_P-littoralis_Contig1557.1.1 vs. uniprot
Match: A0A6H5KGF2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF2_9PHAE) HSP 1 Score: 295 bits (754), Expect = 1.810e-90 Identity = 150/212 (70.75%), Postives = 171/212 (80.66%), Query Frame = 3
Query: 570 VLVRQEEG--RHCTSVHRLARQLVSDSGGLGDMQPIFDGLKGKRYFTQLDLASGFHQIEIAESDRFNTAFRDADGMLWEFTRAGFGLTVLPAAFSRRVKSALGHIDGVFSWLDGILIASSTWEEHLATITLVFNRLLAAGLSVNFAKCIFGAASQDFLGMVMDSTGICPAPSKLRAIADMARPTNVEELRTFLGMTGYLRQFVPLYSITAAP 1199
+ V++++G R C L + LVSDSGGL DMQ IFDGLKGK+YFTQ+DLASGFHQ+EIAE DR+ TAFRDADGMLWEFTRAGFGLTVLPAAF+RRVKSALGH+ GVFSWLD ILIAS +W+EHLAT+TLV NRLLAAGLS +FLGM++DSTG+ PAPSKL AIA M RP VEELRTFLG+TGY RQ VP YS+TAAP
Sbjct: 122 LCVKKKDGTLRLCIDWRELNKLLVSDSGGLADMQTIFDGLKGKKYFTQVDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLAGVFSWLDDILIASDSWQEHLATLTLVLNRLLAAGLS-------------EFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYFRQVVPNYSLTAAP 320
BLAST of mRNA_P-littoralis_Contig1557.1.1 vs. uniprot
Match: A0A6H5L7I8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7I8_9PHAE) HSP 1 Score: 280 bits (715), Expect = 2.530e-85 Identity = 146/214 (68.22%), Postives = 167/214 (78.04%), Query Frame = 3
Query: 570 VLVRQEEG--RHCTSVHRLARQLVSDSGGLGDMQPIFDGLKGKRYFTQLDLASGFHQIEIAESDRFNTAFRDADGMLWEFTRAGFGLTVLPAAFSRRVKSALGHIDGVFSWLDGILIASSTWEEHLATITLVFNRLLAAGLSVNFAKCIFGAASQDFLGMVMDSTGICPAPSKL-RAIADMARPTNVEELRTFLGMTGYL-RQFVPLYSITAAP 1199
+ V++++G R C L + LVSDSGG GDMQ IFDGLKGK+YFTQLDLASGF Q+EIAE DR+ TAFRDADGMLWEFTRAGFGLTVL AAF+RRVKSA GH+ GVFSWLD I+IAS TWEEH+AT+TLV NRLLAAGL V+FAKCIFGAASQ+FLGM++D TG+ PAPSKL R A PT+ G L RQFVP YS+ AAP
Sbjct: 218 LCVKKKDGTLRLCIDWRELNKLLVSDSGGWGDMQTIFDGLKGKKYFTQLDLASGFRQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLAAAFTRRVKSAWGHLSGVFSWLDDIVIASDTWEEHVATLTLVLNRLLAAGLFVSFAKCIFGAASQEFLGMIIDCTGLYPAPSKLARCNRKHASPTHRRRAAHVFGPHRLLARQFVPHYSLAAAP 431
BLAST of mRNA_P-littoralis_Contig1557.1.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE) HSP 1 Score: 286 bits (733), Expect = 7.470e-84 Identity = 144/212 (67.92%), Postives = 171/212 (80.66%), Query Frame = 3
Query: 540 PSLHEPVGGAVLVRQEEG--RHCTSVHRLARQLVSDSGGLGDMQPIFDGLKGKRYFTQLDLASGFHQIEIAESDRFNTAFRDADGMLWEFTRAGFGLTVLPAAFSRRVKSALGHIDGVFSWLDGILIASSTWEEHLATITLVFNRLLAAGLSVNFAKCIFGAASQDFLGMVMDSTGICPAPSKLRAIADMARPTNVEELRTFLG--MTGYLR 1163
PS+ + V++++G R C L + LV+DSGGLGDMQ IFDGLKGKRYFTQ+DLASGFHQIEIAE DR+ TAFRDADGML+EFTRAGFGLTVLP+AF+RRVKSALG +DGVFSWLD IL+A+ TWEEHLA + LV RL AAGLSVNF KCIFGA+SQ+FLGM++D+TG+ PAPSKL AIA+M RP VE+LRT + +T LR
Sbjct: 349 PSMSPWAAQCLCVKKKDGTMRLCIDWRVLNKLLVADSGGLGDMQTIFDGLKGKRYFTQIDLASGFHQIEIAEKDRYKTAFRDADGMLYEFTRAGFGLTVLPSAFTRRVKSALGIVDGVFSWLDDILVANETWEEHLAALVLVLTRLRAAGLSVNFPKCIFGASSQEFLGMIIDATGMHPAPSKLEAIANMPRPQTVEDLRTLVAAPLTDILR 560
BLAST of mRNA_P-littoralis_Contig1557.1.1 vs. uniprot
Match: A0A6H5K5Z9_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Z9_9PHAE) HSP 1 Score: 251 bits (640), Expect = 6.780e-78 Identity = 127/180 (70.56%), Postives = 143/180 (79.44%), Query Frame = 3
Query: 660 MQPIFDGLKGKRYFTQLDLASGFHQIEIAESDRFNTAFRDADGMLWEFTRAGFGLTVLPAAFSRRVKSALGHIDGVFSWLDGILIASSTWEEHLATITLVFNRLLAAGLSVNFAKCIFGAASQDFLGMVMDSTGICPAPSKLRAIADMARPTNVEELRTFLGMTGYLRQFVPLYSITAAP 1199
MQ IFDGLK +YFTQL+LASGFH +EIAE DR TAFRD DGML+EFTRAGFGLT LPAAF+RRVKSALGH+ GVFSWLD ILIAS TWEEHLAT+TLV NRL+AAGLS +FLGM++DSTG+ PAPSKL AI M RP V+EL TFLG+TGYLRQ +P S+TAAP
Sbjct: 1 MQTIFDGLKSNKYFTQLNLASGFHHMEIAEKDRCRTAFRDVDGMLFEFTRAGFGLTALPAAFTRRVKSALGHLLGVFSWLDDILIASDTWEEHLATLTLVLNRLVAAGLS-------------EFLGMIIDSTGLYPAPSKLDAITRMPRPHTVQELHTFLGLTGYLRQLIPNCSLTAAP 167 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1557.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1557.1.1 >prot_P-littoralis_Contig1557.1.1 ID=prot_P-littoralis_Contig1557.1.1|Name=mRNA_P-littoralis_Contig1557.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=180bp MQPIFDGLKGKRYFTQLDLASGFHQIEIAESDRFNTAFRDADGMLWEFTRback to top mRNA from alignment at P-littoralis_Contig1557:2764..3972- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1557.1.1 ID=mRNA_P-littoralis_Contig1557.1.1|Name=mRNA_P-littoralis_Contig1557.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1209bp|location=Sequence derived from alignment at P-littoralis_Contig1557:2764..3972- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1557:2764..3972- >mRNA_P-littoralis_Contig1557.1.1 ID=mRNA_P-littoralis_Contig1557.1.1|Name=mRNA_P-littoralis_Contig1557.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=540bp|location=Sequence derived from alignment at P-littoralis_Contig1557:2764..3972- (Pylaiella littoralis U1_48)back to top |