mRNA_P-littoralis_Contig1556.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1556.2.1
Unique NamemRNA_P-littoralis_Contig1556.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1556.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1556contigP-littoralis_Contig1556:1144..1617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size474
Hectar predicted targeting categoryother localisation
Exons1
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789742.3811758-UTR-P-littoralis_Contig1556:1143..11541680789742.3811758-UTR-P-littoralis_Contig1556:1143..1154Pylaiella littoralis U1_48UTRP-littoralis_Contig1556 1144..1154 +
1680789742.40578-UTR-P-littoralis_Contig1556:1565..16171680789742.40578-UTR-P-littoralis_Contig1556:1565..1617Pylaiella littoralis U1_48UTRP-littoralis_Contig1556 1566..1617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789742.3937309-CDS-P-littoralis_Contig1556:1154..15651680789742.3937309-CDS-P-littoralis_Contig1556:1154..1565Pylaiella littoralis U1_48CDSP-littoralis_Contig1556 1155..1565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1556.2.1prot_P-littoralis_Contig1556.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1556 1155..1565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1556.2.1

>prot_P-littoralis_Contig1556.2.1 ID=prot_P-littoralis_Contig1556.2.1|Name=mRNA_P-littoralis_Contig1556.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp
MTTSSSGTRQRKKRGGGDGGSAAGSPAGDTVDLESTLAEYLKSHTDDAET
KERKLKIKENESKTAFMQAETFREVAAGSPGSKKRKLDVEVMDAETRKLQ
AQNTKTQLDYQAAQAAQTSKLTEGFLIAMERMSKRM*
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mRNA from alignment at P-littoralis_Contig1556:1144..1617+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1556.2.1 ID=mRNA_P-littoralis_Contig1556.2.1|Name=mRNA_P-littoralis_Contig1556.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=474bp|location=Sequence derived from alignment at P-littoralis_Contig1556:1144..1617+ (Pylaiella littoralis U1_48)
AGGTGCTGGACATGACCACTTCATCCAGCGGTACACGCCAGCGCAAGAAG
CGTGGAGGTGGCGATGGGGGTTCGGCCGCCGGATCCCCTGCCGGCGACAC
GGTAGACCTAGAGAGTACACTTGCAGAGTATCTGAAATCTCACACGGACG
ACGCTGAGACTAAGGAAAGGAAGCTCAAGATTAAGGAAAACGAGTCAAAA
ACCGCCTTTATGCAGGCCGAAACCTTTCGTGAAGTAGCTGCCGGTAGCCC
TGGTTCTAAGAAGCGCAAGCTGGATGTAGAGGTCATGGACGCCGAGACCC
GCAAACTACAGGCGCAGAACACAAAAACGCAGCTTGATTATCAGGCTGCC
CAAGCCGCACAGACTAGTAAGCTCACCGAAGGCTTCCTCATCGCCATGGA
GAGGATGTCGAAGCGCATGTAAACTCGCGTAGGTTGGGGTGATTGGCTTT
CTTTTGTGGGTGGCGTGGCGCAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1556:1144..1617+

>mRNA_P-littoralis_Contig1556.2.1 ID=mRNA_P-littoralis_Contig1556.2.1|Name=mRNA_P-littoralis_Contig1556.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig1556:1144..1617+ (Pylaiella littoralis U1_48)
ATGACCACTTCATCCAGCGGTACACGCCAGCGCAAGAAGCGTGGAGGTGG
CGATGGGGGTTCGGCCGCCGGATCCCCTGCCGGCGACACGGTAGACCTAG
AGAGTACACTTGCAGAGTATCTGAAATCTCACACGGACGACGCTGAGACT
AAGGAAAGGAAGCTCAAGATTAAGGAAAACGAGTCAAAAACCGCCTTTAT
GCAGGCCGAAACCTTTCGTGAAGTAGCTGCCGGTAGCCCTGGTTCTAAGA
AGCGCAAGCTGGATGTAGAGGTCATGGACGCCGAGACCCGCAAACTACAG
GCGCAGAACACAAAAACGCAGCTTGATTATCAGGCTGCCCAAGCCGCACA
GACTAGTAAGCTCACCGAAGGCTTCCTCATCGCCATGGAGAGGATGTCGA
AGCGCATGTAA
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